Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_920 and HP15_921 are separated by 287 nucleotides HP15_921 and HP15_922 overlap by 1 nucleotides
HP15_920: HP15_920 - protein belonging to uncharacterized protein family UPF0118, at 933,478 to 934,674
_920
HP15_921: HP15_921 - alcohol dehydrogenase, zinc-binding domain protein, at 934,962 to 935,918
_921
HP15_922: HP15_922 - proline racemase, at 935,918 to 936,979
_922
Position (kb) 934
935
936 Strain fitness (log2 ratio) -2
-1
0
1 at 934.080 kb on + strand, within HP15_920 at 934.080 kb on - strand, within HP15_920 at 934.104 kb on - strand, within HP15_920 at 934.116 kb on - strand, within HP15_920 at 934.236 kb on - strand, within HP15_920 at 934.241 kb on - strand, within HP15_920 at 934.241 kb on - strand, within HP15_920 at 934.370 kb on - strand, within HP15_920 at 934.375 kb on - strand, within HP15_920 at 934.420 kb on - strand, within HP15_920 at 934.634 kb on + strand at 934.835 kb on + strand at 934.839 kb on + strand at 934.888 kb on + strand at 934.936 kb on + strand at 935.009 kb on + strand at 935.024 kb on - strand at 935.054 kb on + strand at 935.311 kb on - strand, within HP15_921 at 935.386 kb on + strand, within HP15_921 at 935.443 kb on + strand, within HP15_921 at 935.454 kb on + strand, within HP15_921 at 935.454 kb on + strand, within HP15_921 at 935.458 kb on - strand, within HP15_921 at 935.477 kb on - strand, within HP15_921 at 935.479 kb on + strand, within HP15_921 at 935.482 kb on - strand, within HP15_921 at 935.487 kb on - strand, within HP15_921 at 935.518 kb on + strand, within HP15_921 at 935.537 kb on - strand, within HP15_921 at 935.602 kb on + strand, within HP15_921 at 935.759 kb on + strand, within HP15_921 at 935.973 kb on + strand at 936.009 kb on + strand at 936.123 kb on - strand, within HP15_922 at 936.300 kb on - strand, within HP15_922 at 936.303 kb on + strand, within HP15_922 at 936.357 kb on + strand, within HP15_922 at 936.438 kb on + strand, within HP15_922 at 936.532 kb on + strand, within HP15_922 at 936.540 kb on - strand, within HP15_922 at 936.826 kb on + strand, within HP15_922 at 936.860 kb on + strand, within HP15_922 at 936.867 kb on - strand, within HP15_922 at 936.872 kb on - strand, within HP15_922
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 934,080 + HP15_920 0.50 -0.1 934,080 - HP15_920 0.50 -0.6 934,104 - HP15_920 0.52 -0.9 934,116 - HP15_920 0.53 -0.2 934,236 - HP15_920 0.63 -0.1 934,241 - HP15_920 0.64 -0.4 934,241 - HP15_920 0.64 +0.4 934,370 - HP15_920 0.75 +0.4 934,375 - HP15_920 0.75 +0.3 934,420 - HP15_920 0.79 +0.5 934,634 + -0.4 934,835 + +0.1 934,839 + -0.2 934,888 + -0.1 934,936 + +0.5 935,009 + +0.9 935,024 - +0.5 935,054 + +0.4 935,311 - HP15_921 0.36 +0.2 935,386 + HP15_921 0.44 +0.2 935,443 + HP15_921 0.50 +0.3 935,454 + HP15_921 0.51 +1.6 935,454 + HP15_921 0.51 +0.2 935,458 - HP15_921 0.52 +0.2 935,477 - HP15_921 0.54 +0.6 935,479 + HP15_921 0.54 -1.0 935,482 - HP15_921 0.54 -0.5 935,487 - HP15_921 0.55 -0.1 935,518 + HP15_921 0.58 +0.3 935,537 - HP15_921 0.60 -0.1 935,602 + HP15_921 0.67 -0.1 935,759 + HP15_921 0.83 -0.7 935,973 + +0.3 936,009 + +0.7 936,123 - HP15_922 0.19 +0.1 936,300 - HP15_922 0.36 -1.3 936,303 + HP15_922 0.36 +0.2 936,357 + HP15_922 0.41 +0.7 936,438 + HP15_922 0.49 +0.5 936,532 + HP15_922 0.58 +0.7 936,540 - HP15_922 0.59 -0.6 936,826 + HP15_922 0.85 -0.4 936,860 + HP15_922 0.89 -1.3 936,867 - HP15_922 0.89 -1.9 936,872 - HP15_922 0.90 -0.3
Or see this region's nucleotide sequence