Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08630 and PGA1_c08640 are separated by 141 nucleotides PGA1_c08640 and PGA1_c08650 are separated by 133 nucleotides
PGA1_c08630: PGA1_c08630 - single-stranded-DNA-specific exonuclease RecJ, at 889,531 to 891,273
_c08630
PGA1_c08640: PGA1_c08640 - fructose-1,6-bisphosphatase class 2, at 891,415 to 892,398
_c08640
PGA1_c08650: PGA1_c08650 - homoserine dehydrogenase Hom, at 892,532 to 893,818
_c08650
Position (kb) 891
892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 891.332 kb on + strand at 891.332 kb on + strand at 891.332 kb on + strand at 891.332 kb on + strand at 891.340 kb on - strand at 891.347 kb on + strand at 891.350 kb on - strand at 891.355 kb on - strand at 891.406 kb on + strand at 891.414 kb on - strand at 891.415 kb on + strand at 891.435 kb on + strand at 891.440 kb on - strand at 891.744 kb on - strand, within PGA1_c08640 at 891.794 kb on - strand, within PGA1_c08640 at 891.920 kb on + strand, within PGA1_c08640 at 891.921 kb on - strand, within PGA1_c08640 at 891.922 kb on - strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.047 kb on + strand, within PGA1_c08640 at 892.132 kb on + strand, within PGA1_c08640 at 892.347 kb on - strand at 892.420 kb on - strand at 892.441 kb on + strand at 892.538 kb on - strand at 892.538 kb on - strand at 892.538 kb on - strand at 892.538 kb on - strand at 892.538 kb on - strand at 892.538 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 891,332 + -0.5 891,332 + -0.4 891,332 + +0.1 891,332 + +0.4 891,340 - +0.1 891,347 + -0.4 891,350 - -0.1 891,355 - -1.4 891,406 + +1.5 891,414 - +0.3 891,415 + -0.4 891,435 + +0.9 891,440 - -0.0 891,744 - PGA1_c08640 0.33 +0.1 891,794 - PGA1_c08640 0.39 -0.6 891,920 + PGA1_c08640 0.51 +0.6 891,921 - PGA1_c08640 0.51 -0.6 891,922 - PGA1_c08640 0.52 -0.1 892,032 + PGA1_c08640 0.63 -1.3 892,032 + PGA1_c08640 0.63 -1.1 892,032 + PGA1_c08640 0.63 -1.9 892,032 + PGA1_c08640 0.63 +0.2 892,032 + PGA1_c08640 0.63 +0.1 892,032 + PGA1_c08640 0.63 -0.4 892,032 + PGA1_c08640 0.63 -1.9 892,032 + PGA1_c08640 0.63 -0.4 892,040 - PGA1_c08640 0.64 -0.6 892,040 - PGA1_c08640 0.64 -0.2 892,040 - PGA1_c08640 0.64 -0.4 892,040 - PGA1_c08640 0.64 -1.0 892,040 - PGA1_c08640 0.64 -1.5 892,040 - PGA1_c08640 0.64 -1.5 892,040 - PGA1_c08640 0.64 -0.3 892,047 + PGA1_c08640 0.64 -1.6 892,132 + PGA1_c08640 0.73 -2.9 892,347 - -1.5 892,420 - -1.0 892,441 + -0.8 892,538 - -0.5 892,538 - +1.3 892,538 - +0.6 892,538 - -0.1 892,538 - -0.9 892,538 - -1.2
Or see this region's nucleotide sequence