Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0809

Experiment: LB 30C timecourse2 timepoint 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0807 and Psest_0808 overlap by 4 nucleotidesPsest_0808 and Psest_0809 are separated by 244 nucleotidesPsest_0809 and Psest_0810 overlap by 10 nucleotidesPsest_0810 and Psest_0811 are separated by 69 nucleotides Psest_0807: Psest_0807 - type IV pilus modification protein PilV, at 883,051 to 883,620 _0807 Psest_0808: Psest_0808 - prepilin-type N-terminal cleavage/methylation domain, at 883,617 to 884,009 _0808 Psest_0809: Psest_0809 - Cytochrome c, mono- and diheme variants, at 884,254 to 885,765 _0809 Psest_0810: Psest_0810 - uroporphyrin-III C-methyltransferase, at 885,756 to 886,592 _0810 Psest_0811: Psest_0811 - heme d1 biosynthesis radical SAM protein NirJ, at 886,662 to 887,843 _0811 Position (kb) 884 885 886Strain fitness (log2 ratio) -2 -1 0 1 2 3at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.478 kb on + strand, within Psest_0807at 883.478 kb on + strand, within Psest_0807at 883.479 kb on - strand, within Psest_0807at 883.479 kb on - strand, within Psest_0807at 883.479 kb on - strand, within Psest_0807at 883.479 kb on - strand, within Psest_0807at 883.479 kb on - strand, within Psest_0807at 883.711 kb on + strand, within Psest_0808at 883.711 kb on + strand, within Psest_0808at 883.740 kb on - strand, within Psest_0808at 883.753 kb on + strand, within Psest_0808at 883.754 kb on - strand, within Psest_0808at 883.754 kb on - strand, within Psest_0808at 883.796 kb on + strand, within Psest_0808at 883.796 kb on + strand, within Psest_0808at 883.797 kb on - strand, within Psest_0808at 883.816 kb on + strand, within Psest_0808at 883.816 kb on + strand, within Psest_0808at 883.906 kb on + strand, within Psest_0808at 883.906 kb on + strand, within Psest_0808at 883.907 kb on - strand, within Psest_0808at 883.907 kb on - strand, within Psest_0808at 883.968 kb on + strand, within Psest_0808at 883.968 kb on + strand, within Psest_0808at 883.969 kb on - strand, within Psest_0808at 883.969 kb on - strand, within Psest_0808at 883.969 kb on - strand, within Psest_0808at 883.969 kb on - strand, within Psest_0808at 883.997 kb on + strandat 883.997 kb on + strandat 883.997 kb on + strandat 883.997 kb on + strandat 883.997 kb on + strandat 883.997 kb on + strandat 883.997 kb on + strandat 883.998 kb on - strandat 883.998 kb on - strandat 883.998 kb on - strandat 883.998 kb on - strandat 883.998 kb on - strandat 883.998 kb on - strandat 883.998 kb on - strandat 884.034 kb on + strandat 884.094 kb on - strandat 884.215 kb on + strandat 884.216 kb on - strandat 884.255 kb on + strandat 884.300 kb on + strandat 884.300 kb on + strandat 884.300 kb on + strandat 884.301 kb on - strandat 884.546 kb on + strand, within Psest_0809at 884.629 kb on + strand, within Psest_0809at 884.629 kb on + strand, within Psest_0809at 884.696 kb on + strand, within Psest_0809at 884.696 kb on + strand, within Psest_0809at 884.696 kb on + strand, within Psest_0809at 884.697 kb on - strand, within Psest_0809at 884.697 kb on - strand, within Psest_0809at 884.697 kb on - strand, within Psest_0809at 884.697 kb on - strand, within Psest_0809at 884.816 kb on + strand, within Psest_0809at 884.816 kb on + strand, within Psest_0809at 884.895 kb on - strand, within Psest_0809at 884.963 kb on + strand, within Psest_0809at 884.964 kb on - strand, within Psest_0809at 884.964 kb on - strand, within Psest_0809at 884.965 kb on + strand, within Psest_0809at 885.068 kb on + strand, within Psest_0809at 885.068 kb on + strand, within Psest_0809at 885.068 kb on + strand, within Psest_0809at 885.068 kb on + strand, within Psest_0809at 885.069 kb on - strand, within Psest_0809at 885.069 kb on - strand, within Psest_0809at 885.069 kb on - strand, within Psest_0809at 885.069 kb on - strand, within Psest_0809at 885.069 kb on - strand, within Psest_0809at 885.069 kb on - strand, within Psest_0809at 885.203 kb on + strand, within Psest_0809at 885.458 kb on + strand, within Psest_0809at 885.459 kb on - strand, within Psest_0809at 885.459 kb on - strand, within Psest_0809at 885.464 kb on + strand, within Psest_0809at 885.465 kb on - strand, within Psest_0809at 885.547 kb on + strand, within Psest_0809at 885.765 kb on + strandat 885.765 kb on + strandat 885.766 kb on - strandat 886.039 kb on + strand, within Psest_0810at 886.039 kb on + strand, within Psest_0810at 886.039 kb on + strand, within Psest_0810at 886.039 kb on + strand, within Psest_0810at 886.040 kb on - strand, within Psest_0810at 886.040 kb on - strand, within Psest_0810at 886.040 kb on - strand, within Psest_0810at 886.040 kb on - strand, within Psest_0810at 886.040 kb on - strand, within Psest_0810at 886.040 kb on - strand, within Psest_0810at 886.040 kb on - strand, within Psest_0810at 886.040 kb on - strand, within Psest_0810at 886.171 kb on + strand, within Psest_0810at 886.171 kb on + strand, within Psest_0810at 886.172 kb on - strand, within Psest_0810at 886.388 kb on - strand, within Psest_0810at 886.388 kb on - strand, within Psest_0810at 886.388 kb on - strand, within Psest_0810at 886.447 kb on + strand, within Psest_0810at 886.620 kb on + strandat 886.621 kb on - strandat 886.621 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 1
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883,400 + Psest_0807 0.61 +0.6
883,400 + Psest_0807 0.61 -0.3
883,400 + Psest_0807 0.61 +0.3
883,400 + Psest_0807 0.61 +0.3
883,400 + Psest_0807 0.61 +1.3
883,400 + Psest_0807 0.61 -1.6
883,400 + Psest_0807 0.61 +0.1
883,400 + Psest_0807 0.61 -0.1
883,400 + Psest_0807 0.61 +0.1
883,400 + Psest_0807 0.61 +1.4
883,400 + Psest_0807 0.61 +1.0
883,401 - Psest_0807 0.61 +1.3
883,401 - Psest_0807 0.61 -0.9
883,401 - Psest_0807 0.61 -1.7
883,401 - Psest_0807 0.61 -0.0
883,401 - Psest_0807 0.61 +2.4
883,401 - Psest_0807 0.61 +0.9
883,401 - Psest_0807 0.61 +1.4
883,401 - Psest_0807 0.61 +1.0
883,401 - Psest_0807 0.61 -1.4
883,401 - Psest_0807 0.61 -1.3
883,401 - Psest_0807 0.61 -1.4
883,478 + Psest_0807 0.75 -0.2
883,478 + Psest_0807 0.75 +0.7
883,479 - Psest_0807 0.75 -0.6
883,479 - Psest_0807 0.75 -0.0
883,479 - Psest_0807 0.75 +0.8
883,479 - Psest_0807 0.75 -1.8
883,479 - Psest_0807 0.75 +0.2
883,711 + Psest_0808 0.24 +0.5
883,711 + Psest_0808 0.24 +0.7
883,740 - Psest_0808 0.31 -1.6
883,753 + Psest_0808 0.35 +1.4
883,754 - Psest_0808 0.35 -0.4
883,754 - Psest_0808 0.35 +0.8
883,796 + Psest_0808 0.46 -0.3
883,796 + Psest_0808 0.46 -0.0
883,797 - Psest_0808 0.46 +0.3
883,816 + Psest_0808 0.51 +2.4
883,816 + Psest_0808 0.51 +0.4
883,906 + Psest_0808 0.74 -0.9
883,906 + Psest_0808 0.74 -0.6
883,907 - Psest_0808 0.74 +0.6
883,907 - Psest_0808 0.74 -0.4
883,968 + Psest_0808 0.89 -0.3
883,968 + Psest_0808 0.89 +0.7
883,969 - Psest_0808 0.90 +1.9
883,969 - Psest_0808 0.90 -1.5
883,969 - Psest_0808 0.90 -0.7
883,969 - Psest_0808 0.90 +0.0
883,997 + -0.5
883,997 + +0.8
883,997 + -0.2
883,997 + -0.9
883,997 + -0.1
883,997 + +1.0
883,997 + -2.0
883,998 - -1.4
883,998 - -1.9
883,998 - -0.7
883,998 - -1.9
883,998 - +0.4
883,998 - +0.3
883,998 - +1.3
884,034 + +0.3
884,094 - +1.4
884,215 + +2.7
884,216 - +0.2
884,255 + +1.7
884,300 + +0.4
884,300 + +1.2
884,300 + +3.2
884,301 - +1.6
884,546 + Psest_0809 0.19 +1.5
884,629 + Psest_0809 0.25 +1.3
884,629 + Psest_0809 0.25 +1.1
884,696 + Psest_0809 0.29 -0.2
884,696 + Psest_0809 0.29 +0.8
884,696 + Psest_0809 0.29 +0.2
884,697 - Psest_0809 0.29 -0.9
884,697 - Psest_0809 0.29 +0.9
884,697 - Psest_0809 0.29 -0.2
884,697 - Psest_0809 0.29 -0.9
884,816 + Psest_0809 0.37 -1.8
884,816 + Psest_0809 0.37 +1.2
884,895 - Psest_0809 0.42 +0.4
884,963 + Psest_0809 0.47 +0.7
884,964 - Psest_0809 0.47 -0.3
884,964 - Psest_0809 0.47 -0.2
884,965 + Psest_0809 0.47 +0.8
885,068 + Psest_0809 0.54 +1.0
885,068 + Psest_0809 0.54 +2.4
885,068 + Psest_0809 0.54 +2.7
885,068 + Psest_0809 0.54 +1.8
885,069 - Psest_0809 0.54 +0.7
885,069 - Psest_0809 0.54 +0.4
885,069 - Psest_0809 0.54 -0.0
885,069 - Psest_0809 0.54 -0.9
885,069 - Psest_0809 0.54 -0.6
885,069 - Psest_0809 0.54 +0.2
885,203 + Psest_0809 0.63 -1.9
885,458 + Psest_0809 0.80 +0.4
885,459 - Psest_0809 0.80 +0.1
885,459 - Psest_0809 0.80 +0.9
885,464 + Psest_0809 0.80 -1.4
885,465 - Psest_0809 0.80 +1.4
885,547 + Psest_0809 0.86 +1.9
885,765 + +0.1
885,765 + +0.5
885,766 - -0.4
886,039 + Psest_0810 0.34 -0.9
886,039 + Psest_0810 0.34 +1.4
886,039 + Psest_0810 0.34 -0.6
886,039 + Psest_0810 0.34 +0.8
886,040 - Psest_0810 0.34 +1.2
886,040 - Psest_0810 0.34 -0.9
886,040 - Psest_0810 0.34 +1.0
886,040 - Psest_0810 0.34 +0.3
886,040 - Psest_0810 0.34 -0.2
886,040 - Psest_0810 0.34 +2.1
886,040 - Psest_0810 0.34 +1.2
886,040 - Psest_0810 0.34 -0.6
886,171 + Psest_0810 0.50 +0.3
886,171 + Psest_0810 0.50 +0.7
886,172 - Psest_0810 0.50 -0.9
886,388 - Psest_0810 0.76 +0.4
886,388 - Psest_0810 0.76 -0.2
886,388 - Psest_0810 0.76 +1.4
886,447 + Psest_0810 0.83 -1.2
886,620 + +0.3
886,621 - +1.4
886,621 - +1.0

Or see this region's nucleotide sequence