Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0701

Experiment: LB 30C timecourse2 timepoint 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0700 and Psest_0701 are separated by 168 nucleotidesPsest_0701 and Psest_0702 are separated by 51 nucleotides Psest_0700: Psest_0700 - diguanylate cyclase (GGDEF) domain, at 764,508 to 766,370 _0700 Psest_0701: Psest_0701 - uncharacterized radical SAM protein YgiQ, at 766,539 to 768,818 _0701 Psest_0702: Psest_0702 - Methyl-accepting chemotaxis protein, at 768,870 to 770,831 _0702 Position (kb) 766 767 768 769Strain fitness (log2 ratio) -3 -2 -1 0 1at 765.724 kb on + strand, within Psest_0700at 765.733 kb on + strand, within Psest_0700at 765.734 kb on - strand, within Psest_0700at 765.773 kb on - strand, within Psest_0700at 765.799 kb on + strand, within Psest_0700at 765.799 kb on + strand, within Psest_0700at 765.799 kb on + strand, within Psest_0700at 765.800 kb on - strand, within Psest_0700at 765.895 kb on + strand, within Psest_0700at 765.907 kb on + strand, within Psest_0700at 765.907 kb on + strand, within Psest_0700at 765.907 kb on + strand, within Psest_0700at 765.907 kb on + strand, within Psest_0700at 765.907 kb on + strand, within Psest_0700at 765.908 kb on - strand, within Psest_0700at 766.045 kb on + strand, within Psest_0700at 766.046 kb on - strand, within Psest_0700at 766.261 kb on + strandat 766.261 kb on + strandat 766.262 kb on - strandat 766.262 kb on - strandat 766.262 kb on - strandat 766.262 kb on - strandat 766.262 kb on - strandat 766.262 kb on - strandat 766.262 kb on - strandat 766.262 kb on - strandat 766.335 kb on + strandat 766.350 kb on + strandat 766.351 kb on - strandat 766.351 kb on - strandat 766.412 kb on + strandat 766.412 kb on + strandat 766.413 kb on - strandat 766.413 kb on - strandat 766.413 kb on - strandat 766.414 kb on + strandat 766.500 kb on + strandat 766.500 kb on + strandat 766.502 kb on + strandat 766.575 kb on + strandat 766.576 kb on - strandat 766.683 kb on + strandat 766.683 kb on + strandat 766.683 kb on + strandat 766.683 kb on + strandat 766.684 kb on - strandat 766.684 kb on - strandat 766.684 kb on - strandat 766.684 kb on - strandat 766.899 kb on + strand, within Psest_0701at 766.950 kb on + strand, within Psest_0701at 766.950 kb on + strand, within Psest_0701at 766.950 kb on + strand, within Psest_0701at 766.951 kb on - strand, within Psest_0701at 766.974 kb on + strand, within Psest_0701at 766.974 kb on + strand, within Psest_0701at 766.974 kb on + strand, within Psest_0701at 766.975 kb on - strand, within Psest_0701at 766.975 kb on - strand, within Psest_0701at 767.040 kb on + strand, within Psest_0701at 767.455 kb on - strand, within Psest_0701at 767.586 kb on + strand, within Psest_0701at 767.705 kb on + strand, within Psest_0701at 767.706 kb on - strand, within Psest_0701at 767.706 kb on - strand, within Psest_0701at 767.706 kb on - strand, within Psest_0701at 767.706 kb on - strand, within Psest_0701at 767.850 kb on + strand, within Psest_0701at 767.850 kb on + strand, within Psest_0701at 767.909 kb on - strand, within Psest_0701at 767.964 kb on + strand, within Psest_0701at 768.051 kb on + strand, within Psest_0701at 768.051 kb on + strand, within Psest_0701at 768.051 kb on + strand, within Psest_0701at 768.051 kb on + strand, within Psest_0701at 768.051 kb on + strand, within Psest_0701at 768.088 kb on - strand, within Psest_0701at 768.159 kb on + strand, within Psest_0701at 768.159 kb on + strand, within Psest_0701at 768.159 kb on + strand, within Psest_0701at 768.159 kb on + strand, within Psest_0701at 768.159 kb on + strand, within Psest_0701at 768.159 kb on + strand, within Psest_0701at 768.159 kb on + strand, within Psest_0701at 768.160 kb on - strand, within Psest_0701at 768.160 kb on - strand, within Psest_0701at 768.160 kb on - strand, within Psest_0701at 768.189 kb on + strand, within Psest_0701at 768.189 kb on + strand, within Psest_0701at 768.190 kb on - strand, within Psest_0701at 768.190 kb on - strand, within Psest_0701at 768.190 kb on - strand, within Psest_0701at 768.216 kb on + strand, within Psest_0701at 768.216 kb on + strand, within Psest_0701at 768.228 kb on + strand, within Psest_0701at 768.228 kb on + strand, within Psest_0701at 768.229 kb on - strand, within Psest_0701at 768.229 kb on - strand, within Psest_0701at 768.229 kb on - strand, within Psest_0701at 768.331 kb on - strand, within Psest_0701at 768.363 kb on + strand, within Psest_0701at 768.363 kb on + strand, within Psest_0701at 768.363 kb on + strand, within Psest_0701at 768.364 kb on - strand, within Psest_0701at 768.364 kb on - strand, within Psest_0701at 768.364 kb on - strand, within Psest_0701at 768.364 kb on - strand, within Psest_0701at 768.390 kb on - strand, within Psest_0701at 768.399 kb on + strand, within Psest_0701at 768.400 kb on - strand, within Psest_0701at 768.400 kb on - strand, within Psest_0701at 768.400 kb on - strand, within Psest_0701at 768.400 kb on - strand, within Psest_0701at 768.400 kb on - strand, within Psest_0701at 768.515 kb on + strand, within Psest_0701at 768.839 kb on - strandat 768.839 kb on - strandat 768.953 kb on + strandat 768.953 kb on + strandat 769.723 kb on + strand, within Psest_0702at 769.723 kb on + strand, within Psest_0702at 769.724 kb on - strand, within Psest_0702at 769.724 kb on - strand, within Psest_0702

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 1
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765,724 + Psest_0700 0.65 -1.0
765,733 + Psest_0700 0.66 +0.1
765,734 - Psest_0700 0.66 +1.3
765,773 - Psest_0700 0.68 -1.2
765,799 + Psest_0700 0.69 -0.3
765,799 + Psest_0700 0.69 -0.1
765,799 + Psest_0700 0.69 -0.8
765,800 - Psest_0700 0.69 -2.4
765,895 + Psest_0700 0.74 -0.1
765,907 + Psest_0700 0.75 -0.6
765,907 + Psest_0700 0.75 -1.3
765,907 + Psest_0700 0.75 -0.8
765,907 + Psest_0700 0.75 +0.0
765,907 + Psest_0700 0.75 -0.5
765,908 - Psest_0700 0.75 +0.5
766,045 + Psest_0700 0.83 +0.2
766,046 - Psest_0700 0.83 +0.4
766,261 + +0.5
766,261 + -0.7
766,262 - -0.1
766,262 - +0.4
766,262 - -0.2
766,262 - -0.1
766,262 - +0.1
766,262 - +0.2
766,262 - +0.1
766,262 - -0.6
766,335 + -0.4
766,350 + +0.1
766,351 - +0.1
766,351 - -0.6
766,412 + +0.5
766,412 + -0.4
766,413 - -0.3
766,413 - -0.6
766,413 - -0.5
766,414 + -0.7
766,500 + -0.1
766,500 + -1.0
766,502 + -1.0
766,575 + -0.1
766,576 - -0.4
766,683 + -0.0
766,683 + -0.1
766,683 + -0.6
766,683 + +1.0
766,684 - -0.3
766,684 - +0.4
766,684 - -0.5
766,684 - -1.7
766,899 + Psest_0701 0.16 -0.0
766,950 + Psest_0701 0.18 +1.0
766,950 + Psest_0701 0.18 -0.4
766,950 + Psest_0701 0.18 -0.4
766,951 - Psest_0701 0.18 -0.2
766,974 + Psest_0701 0.19 -0.6
766,974 + Psest_0701 0.19 -1.4
766,974 + Psest_0701 0.19 -0.8
766,975 - Psest_0701 0.19 -0.5
766,975 - Psest_0701 0.19 -0.4
767,040 + Psest_0701 0.22 -0.4
767,455 - Psest_0701 0.40 -0.2
767,586 + Psest_0701 0.46 -0.9
767,705 + Psest_0701 0.51 -3.6
767,706 - Psest_0701 0.51 -0.3
767,706 - Psest_0701 0.51 -0.0
767,706 - Psest_0701 0.51 -0.3
767,706 - Psest_0701 0.51 -1.1
767,850 + Psest_0701 0.57 -1.8
767,850 + Psest_0701 0.57 -1.1
767,909 - Psest_0701 0.60 -1.0
767,964 + Psest_0701 0.62 -1.1
768,051 + Psest_0701 0.66 -0.1
768,051 + Psest_0701 0.66 -0.2
768,051 + Psest_0701 0.66 +0.5
768,051 + Psest_0701 0.66 -1.0
768,051 + Psest_0701 0.66 +0.2
768,088 - Psest_0701 0.68 -0.5
768,159 + Psest_0701 0.71 +0.2
768,159 + Psest_0701 0.71 -2.1
768,159 + Psest_0701 0.71 +0.7
768,159 + Psest_0701 0.71 -0.9
768,159 + Psest_0701 0.71 -0.4
768,159 + Psest_0701 0.71 -0.9
768,159 + Psest_0701 0.71 -0.2
768,160 - Psest_0701 0.71 +0.5
768,160 - Psest_0701 0.71 +1.2
768,160 - Psest_0701 0.71 -0.3
768,189 + Psest_0701 0.72 -0.1
768,189 + Psest_0701 0.72 -0.4
768,190 - Psest_0701 0.72 -0.2
768,190 - Psest_0701 0.72 -1.3
768,190 - Psest_0701 0.72 -0.1
768,216 + Psest_0701 0.74 -0.3
768,216 + Psest_0701 0.74 +1.5
768,228 + Psest_0701 0.74 -1.5
768,228 + Psest_0701 0.74 -0.3
768,229 - Psest_0701 0.74 -2.7
768,229 - Psest_0701 0.74 -1.5
768,229 - Psest_0701 0.74 -0.5
768,331 - Psest_0701 0.79 -0.8
768,363 + Psest_0701 0.80 -0.4
768,363 + Psest_0701 0.80 +0.1
768,363 + Psest_0701 0.80 -1.3
768,364 - Psest_0701 0.80 -0.9
768,364 - Psest_0701 0.80 -0.7
768,364 - Psest_0701 0.80 -0.2
768,364 - Psest_0701 0.80 -0.4
768,390 - Psest_0701 0.81 +0.7
768,399 + Psest_0701 0.82 -1.2
768,400 - Psest_0701 0.82 +0.8
768,400 - Psest_0701 0.82 +0.5
768,400 - Psest_0701 0.82 -0.6
768,400 - Psest_0701 0.82 +0.2
768,400 - Psest_0701 0.82 +1.0
768,515 + Psest_0701 0.87 -0.2
768,839 - -1.2
768,839 - +0.4
768,953 + +0.7
768,953 + +0.0
769,723 + Psest_0702 0.43 -0.1
769,723 + Psest_0702 0.43 -0.4
769,724 - Psest_0702 0.44 -0.9
769,724 - Psest_0702 0.44 -0.5

Or see this region's nucleotide sequence