Experiment: LB 30C timecourse2 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0649 and Psest_0650 are separated by 196 nucleotides Psest_0650 and Psest_0651 are separated by 94 nucleotides
Psest_0649: Psest_0649 - Glutamate decarboxylase and related PLP-dependent proteins, at 704,318 to 705,841
_0649
Psest_0650: Psest_0650 - RNA polymerase sigma factor, sigma-70 family, at 706,038 to 706,535
_0650
Psest_0651: Psest_0651 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 706,630 to 709,023
_0651
Position (kb) 706
707 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 705.552 kb on + strand, within Psest_0649 at 705.552 kb on + strand, within Psest_0649 at 705.552 kb on + strand, within Psest_0649 at 705.553 kb on - strand, within Psest_0649 at 705.570 kb on + strand, within Psest_0649 at 705.570 kb on + strand, within Psest_0649 at 705.570 kb on + strand, within Psest_0649 at 705.588 kb on + strand, within Psest_0649 at 705.589 kb on - strand, within Psest_0649 at 705.589 kb on - strand, within Psest_0649 at 706.040 kb on - strand at 706.089 kb on - strand, within Psest_0650 at 706.089 kb on - strand, within Psest_0650 at 706.200 kb on + strand, within Psest_0650 at 706.200 kb on + strand, within Psest_0650 at 706.200 kb on + strand, within Psest_0650 at 706.201 kb on - strand, within Psest_0650 at 706.351 kb on + strand, within Psest_0650 at 706.351 kb on + strand, within Psest_0650 at 706.352 kb on - strand, within Psest_0650 at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.493 kb on - strand at 706.493 kb on - strand at 706.493 kb on - strand at 706.493 kb on - strand at 706.568 kb on - strand at 706.712 kb on + strand at 706.712 kb on + strand at 706.715 kb on + strand at 706.715 kb on + strand at 706.715 kb on + strand at 706.715 kb on + strand at 706.716 kb on - strand at 706.822 kb on - strand at 706.922 kb on + strand, within Psest_0651 at 706.922 kb on + strand, within Psest_0651 at 706.922 kb on + strand, within Psest_0651 at 706.922 kb on + strand, within Psest_0651 at 706.922 kb on + strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.938 kb on - strand, within Psest_0651 at 707.086 kb on + strand, within Psest_0651 at 707.086 kb on + strand, within Psest_0651 at 707.357 kb on + strand, within Psest_0651 at 707.450 kb on + strand, within Psest_0651 at 707.451 kb on - strand, within Psest_0651 at 707.489 kb on + strand, within Psest_0651 at 707.489 kb on + strand, within Psest_0651
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 1 remove 705,552 + Psest_0649 0.81 -1.2 705,552 + Psest_0649 0.81 -0.6 705,552 + Psest_0649 0.81 -1.2 705,553 - Psest_0649 0.81 -0.2 705,570 + Psest_0649 0.82 -0.5 705,570 + Psest_0649 0.82 +0.2 705,570 + Psest_0649 0.82 -1.4 705,588 + Psest_0649 0.83 -1.4 705,589 - Psest_0649 0.83 +0.6 705,589 - Psest_0649 0.83 +0.6 706,040 - +0.4 706,089 - Psest_0650 0.10 -1.3 706,089 - Psest_0650 0.10 +0.1 706,200 + Psest_0650 0.33 -2.0 706,200 + Psest_0650 0.33 -1.0 706,200 + Psest_0650 0.33 -0.7 706,201 - Psest_0650 0.33 +0.4 706,351 + Psest_0650 0.63 -2.1 706,351 + Psest_0650 0.63 -0.1 706,352 - Psest_0650 0.63 -1.2 706,492 + +1.2 706,492 + -1.1 706,492 + -1.4 706,492 + -0.2 706,492 + -0.4 706,492 + +0.7 706,492 + +0.1 706,492 + -1.2 706,492 + -2.2 706,492 + +0.1 706,493 - -0.2 706,493 - -0.0 706,493 - -0.6 706,493 - -0.6 706,568 - +0.9 706,712 + +0.4 706,712 + -0.2 706,715 + +0.8 706,715 + +0.5 706,715 + -2.6 706,715 + +4.0 706,716 - +1.1 706,822 - +0.8 706,922 + Psest_0651 0.12 -1.0 706,922 + Psest_0651 0.12 +0.4 706,922 + Psest_0651 0.12 +0.4 706,922 + Psest_0651 0.12 +0.4 706,922 + Psest_0651 0.12 -0.0 706,923 - Psest_0651 0.12 +0.7 706,923 - Psest_0651 0.12 -1.8 706,923 - Psest_0651 0.12 -3.0 706,923 - Psest_0651 0.12 -0.7 706,923 - Psest_0651 0.12 -3.0 706,923 - Psest_0651 0.12 -1.1 706,923 - Psest_0651 0.12 +1.4 706,938 - Psest_0651 0.13 +0.4 707,086 + Psest_0651 0.19 -1.2 707,086 + Psest_0651 0.19 +0.4 707,357 + Psest_0651 0.30 +1.8 707,450 + Psest_0651 0.34 -0.6 707,451 - Psest_0651 0.34 -0.2 707,489 + Psest_0651 0.36 -2.1 707,489 + Psest_0651 0.36 +0.6
Or see this region's nucleotide sequence