Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05970 and PGA1_c05980 are separated by 184 nucleotides PGA1_c05980 and PGA1_c05990 are separated by 222 nucleotides PGA1_c05990 and PGA1_c06000 are separated by 58 nucleotides PGA1_c06000 and PGA1_c06010 are separated by 40 nucleotides
PGA1_c05970: PGA1_c05970 - ATP-dependent zinc metalloprotease FtsH, at 609,640 to 611,553
_c05970
PGA1_c05980: PGA1_c05980 - Uncharacterized protein conserved in bacteria, at 611,738 to 612,316
_c05980
PGA1_c05990: PGA1_c05990 - formate--tetrahydrofolate ligase Fhs, at 612,539 to 614,215
_c05990
PGA1_c06000: PGA1_c06000 - chorismate mutase-like protein, at 614,274 to 614,579
_c06000
PGA1_c06010: PGA1_c06010 - bifunctional protein FolD, at 614,620 to 615,522
_c06010
Position (kb) 612
613
614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 611.594 kb on + strand at 611.594 kb on + strand at 611.625 kb on + strand at 611.670 kb on + strand at 611.683 kb on + strand at 611.996 kb on + strand, within PGA1_c05980 at 612.047 kb on - strand, within PGA1_c05980 at 612.144 kb on + strand, within PGA1_c05980 at 612.235 kb on - strand, within PGA1_c05980 at 612.237 kb on + strand, within PGA1_c05980 at 612.240 kb on - strand, within PGA1_c05980 at 612.246 kb on + strand, within PGA1_c05980 at 612.264 kb on - strand at 612.330 kb on - strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.498 kb on + strand at 612.542 kb on + strand at 612.575 kb on + strand at 612.575 kb on + strand at 612.575 kb on + strand at 612.575 kb on + strand at 612.583 kb on - strand at 612.662 kb on - strand at 612.773 kb on + strand, within PGA1_c05990 at 612.931 kb on - strand, within PGA1_c05990 at 613.096 kb on + strand, within PGA1_c05990 at 613.139 kb on - strand, within PGA1_c05990 at 613.140 kb on + strand, within PGA1_c05990 at 613.176 kb on - strand, within PGA1_c05990 at 613.195 kb on + strand, within PGA1_c05990 at 613.293 kb on - strand, within PGA1_c05990 at 613.312 kb on + strand, within PGA1_c05990 at 613.320 kb on - strand, within PGA1_c05990 at 613.449 kb on + strand, within PGA1_c05990 at 613.462 kb on - strand, within PGA1_c05990 at 613.533 kb on - strand, within PGA1_c05990 at 613.533 kb on - strand, within PGA1_c05990 at 613.614 kb on + strand, within PGA1_c05990 at 613.650 kb on - strand, within PGA1_c05990 at 613.658 kb on - strand, within PGA1_c05990 at 613.708 kb on + strand, within PGA1_c05990 at 613.726 kb on - strand, within PGA1_c05990 at 613.737 kb on + strand, within PGA1_c05990 at 613.751 kb on - strand, within PGA1_c05990 at 613.852 kb on + strand, within PGA1_c05990 at 613.852 kb on + strand, within PGA1_c05990 at 613.857 kb on + strand, within PGA1_c05990 at 613.924 kb on + strand, within PGA1_c05990 at 614.185 kb on - strand at 614.205 kb on - strand at 614.307 kb on + strand, within PGA1_c06000 at 614.339 kb on + strand, within PGA1_c06000 at 614.348 kb on + strand, within PGA1_c06000 at 614.417 kb on + strand, within PGA1_c06000 at 614.497 kb on + strand, within PGA1_c06000 at 614.548 kb on + strand, within PGA1_c06000 at 614.586 kb on + strand at 614.586 kb on + strand at 614.586 kb on + strand at 614.586 kb on + strand at 614.586 kb on + strand at 614.586 kb on + strand at 614.594 kb on - strand at 614.594 kb on - strand at 614.618 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 611,594 + -0.7 611,594 + +1.4 611,625 + -1.1 611,670 + -0.4 611,683 + -0.0 611,996 + PGA1_c05980 0.45 +0.3 612,047 - PGA1_c05980 0.53 -0.4 612,144 + PGA1_c05980 0.70 +0.6 612,235 - PGA1_c05980 0.86 -1.8 612,237 + PGA1_c05980 0.86 +0.3 612,240 - PGA1_c05980 0.87 -0.5 612,246 + PGA1_c05980 0.88 -0.1 612,264 - -0.2 612,330 - +0.7 612,396 + -2.0 612,396 + +0.2 612,396 + +0.2 612,396 + +0.1 612,396 + -1.4 612,396 + -0.4 612,396 + -0.4 612,396 + -0.8 612,396 + -0.1 612,404 - +0.1 612,404 - -0.4 612,404 - +0.3 612,404 - +0.8 612,404 - -0.5 612,404 - +0.0 612,404 - +0.6 612,404 - +0.6 612,404 - -0.5 612,498 + +0.0 612,542 + -2.4 612,575 + -1.4 612,575 + -1.6 612,575 + +0.1 612,575 + -0.0 612,583 - -1.1 612,662 - -0.6 612,773 + PGA1_c05990 0.14 -0.2 612,931 - PGA1_c05990 0.23 -0.1 613,096 + PGA1_c05990 0.33 -0.6 613,139 - PGA1_c05990 0.36 -1.1 613,140 + PGA1_c05990 0.36 -1.6 613,176 - PGA1_c05990 0.38 -0.6 613,195 + PGA1_c05990 0.39 -0.0 613,293 - PGA1_c05990 0.45 -0.5 613,312 + PGA1_c05990 0.46 -1.6 613,320 - PGA1_c05990 0.47 -1.3 613,449 + PGA1_c05990 0.54 -0.5 613,462 - PGA1_c05990 0.55 -0.7 613,533 - PGA1_c05990 0.59 -1.8 613,533 - PGA1_c05990 0.59 -0.4 613,614 + PGA1_c05990 0.64 -0.1 613,650 - PGA1_c05990 0.66 +0.3 613,658 - PGA1_c05990 0.67 -1.1 613,708 + PGA1_c05990 0.70 -0.5 613,726 - PGA1_c05990 0.71 -0.5 613,737 + PGA1_c05990 0.71 -1.7 613,751 - PGA1_c05990 0.72 -0.6 613,852 + PGA1_c05990 0.78 -1.7 613,852 + PGA1_c05990 0.78 -0.1 613,857 + PGA1_c05990 0.79 -1.3 613,924 + PGA1_c05990 0.83 -0.5 614,185 - -1.3 614,205 - -1.3 614,307 + PGA1_c06000 0.11 -1.3 614,339 + PGA1_c06000 0.21 -2.9 614,348 + PGA1_c06000 0.24 -3.3 614,417 + PGA1_c06000 0.47 -1.9 614,497 + PGA1_c06000 0.73 -2.5 614,548 + PGA1_c06000 0.90 -2.3 614,586 + +0.5 614,586 + -0.8 614,586 + +1.1 614,586 + +1.1 614,586 + +0.4 614,586 + +1.0 614,594 - -0.7 614,594 - +0.8 614,618 - -1.0
Or see this region's nucleotide sequence