Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_rRNA5 and HP15_rRNA6 are separated by 101 nucleotides HP15_rRNA6 and HP15_538 are separated by 128 nucleotides HP15_538 and HP15_539 are separated by 90 nucleotides HP15_539 and HP15_540 overlap by 1 nucleotides
HP15_rRNA5: HP15_rRNA5 - 23S ribosomal RNA, at 556,738 to 559,629
_rRNA5
HP15_rRNA6: HP15_rRNA6 - 5S ribosomal RNA, at 559,731 to 559,844
_rRNA6
HP15_538: HP15_538 - 2-isopropylmalate synthase, at 559,973 to 561,523
_538
HP15_539: HP15_539 - 2-isopropylmalate synthase, at 561,614 to 562,372
_539
HP15_540: HP15_540 - ribosomal-protein-alanine acetyltransferase, at 562,372 to 562,857
_540
Position (kb) 559
560
561
562 Strain fitness (log2 ratio) -1
0
1 at 559.929 kb on + strand at 559.934 kb on - strand at 559.936 kb on + strand at 560.050 kb on - strand at 560.055 kb on - strand at 560.852 kb on + strand, within HP15_538 at 560.947 kb on + strand, within HP15_538 at 560.960 kb on - strand, within HP15_538 at 561.040 kb on + strand, within HP15_538 at 561.058 kb on + strand, within HP15_538 at 561.155 kb on + strand, within HP15_538 at 561.158 kb on - strand, within HP15_538 at 561.160 kb on + strand, within HP15_538 at 561.184 kb on + strand, within HP15_538 at 561.250 kb on - strand, within HP15_538 at 561.277 kb on + strand, within HP15_538 at 561.285 kb on - strand, within HP15_538 at 561.354 kb on + strand, within HP15_538 at 561.382 kb on + strand at 561.459 kb on - strand at 562.445 kb on + strand, within HP15_540
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 559,929 + +0.0 559,934 - +0.5 559,936 + +1.0 560,050 - +0.4 560,055 - +0.4 560,852 + HP15_538 0.57 +1.2 560,947 + HP15_538 0.63 -0.3 560,960 - HP15_538 0.64 -0.2 561,040 + HP15_538 0.69 +0.1 561,058 + HP15_538 0.70 -0.2 561,155 + HP15_538 0.76 -0.5 561,158 - HP15_538 0.76 -0.1 561,160 + HP15_538 0.77 +0.9 561,184 + HP15_538 0.78 +0.9 561,250 - HP15_538 0.82 -0.1 561,277 + HP15_538 0.84 +0.8 561,285 - HP15_538 0.85 -0.8 561,354 + HP15_538 0.89 +0.8 561,382 + +1.4 561,459 - +0.6 562,445 + HP15_540 0.15 -0.1
Or see this region's nucleotide sequence