Experiment: LB 30C timecourse2 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0431 and Psest_0432 overlap by 7 nucleotides Psest_0432 and Psest_0434 are separated by 430 nucleotides
Psest_0431: Psest_0431 - Lactate dehydrogenase and related dehydrogenases, at 468,830 to 469,840
_0431
Psest_0432: Psest_0432 - Transcriptional regulator, at 469,834 to 470,703
_0432
Psest_0434: Psest_0434 - hypothetical protein, at 471,134 to 471,760
_0434
Position (kb) 469
470
471 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 468.847 kb on + strand at 468.848 kb on - strand at 468.849 kb on + strand at 468.849 kb on + strand at 468.849 kb on + strand at 468.849 kb on + strand at 468.849 kb on + strand at 468.849 kb on + strand at 468.850 kb on - strand at 468.850 kb on - strand at 468.850 kb on - strand at 468.850 kb on - strand at 468.850 kb on - strand at 468.861 kb on + strand at 468.862 kb on - strand at 469.038 kb on + strand, within Psest_0431 at 469.245 kb on - strand, within Psest_0431 at 469.267 kb on + strand, within Psest_0431 at 469.267 kb on + strand, within Psest_0431 at 469.506 kb on + strand, within Psest_0431 at 469.527 kb on + strand, within Psest_0431 at 469.527 kb on + strand, within Psest_0431 at 469.527 kb on + strand, within Psest_0431 at 469.527 kb on + strand, within Psest_0431 at 469.527 kb on + strand, within Psest_0431 at 469.528 kb on - strand, within Psest_0431 at 469.528 kb on - strand, within Psest_0431 at 469.528 kb on - strand, within Psest_0431 at 469.528 kb on - strand, within Psest_0431 at 469.528 kb on - strand, within Psest_0431 at 469.528 kb on - strand, within Psest_0431 at 469.548 kb on + strand, within Psest_0431 at 469.602 kb on - strand, within Psest_0431 at 469.614 kb on + strand, within Psest_0431 at 469.614 kb on + strand, within Psest_0431 at 469.615 kb on - strand, within Psest_0431 at 469.615 kb on - strand, within Psest_0431 at 469.615 kb on - strand, within Psest_0431 at 469.615 kb on - strand, within Psest_0431 at 469.687 kb on + strand, within Psest_0431 at 469.688 kb on - strand, within Psest_0431 at 469.688 kb on - strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.866 kb on - strand at 470.008 kb on - strand, within Psest_0432 at 470.072 kb on + strand, within Psest_0432 at 470.128 kb on + strand, within Psest_0432 at 470.128 kb on + strand, within Psest_0432 at 470.128 kb on + strand, within Psest_0432 at 470.128 kb on + strand, within Psest_0432 at 470.128 kb on + strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.155 kb on + strand, within Psest_0432 at 470.155 kb on + strand, within Psest_0432 at 470.155 kb on + strand, within Psest_0432 at 470.155 kb on + strand, within Psest_0432 at 470.155 kb on + strand, within Psest_0432 at 470.155 kb on + strand, within Psest_0432 at 470.156 kb on - strand, within Psest_0432 at 470.156 kb on - strand, within Psest_0432 at 470.156 kb on - strand, within Psest_0432 at 470.156 kb on - strand, within Psest_0432 at 470.156 kb on - strand, within Psest_0432 at 470.156 kb on - strand, within Psest_0432 at 470.229 kb on - strand, within Psest_0432 at 470.229 kb on - strand, within Psest_0432 at 470.229 kb on - strand, within Psest_0432 at 470.271 kb on - strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.364 kb on - strand, within Psest_0432 at 470.364 kb on - strand, within Psest_0432 at 470.364 kb on - strand, within Psest_0432 at 470.364 kb on - strand, within Psest_0432 at 470.364 kb on - strand, within Psest_0432 at 470.440 kb on + strand, within Psest_0432 at 470.440 kb on + strand, within Psest_0432 at 470.440 kb on + strand, within Psest_0432 at 470.441 kb on - strand, within Psest_0432 at 470.441 kb on - strand, within Psest_0432 at 470.552 kb on + strand, within Psest_0432 at 470.552 kb on + strand, within Psest_0432 at 470.552 kb on + strand, within Psest_0432 at 470.553 kb on - strand, within Psest_0432 at 470.583 kb on - strand, within Psest_0432 at 470.675 kb on + strand at 470.675 kb on + strand at 470.675 kb on + strand at 470.675 kb on + strand at 470.676 kb on - strand at 470.676 kb on - strand at 470.693 kb on + strand at 470.693 kb on + strand at 470.693 kb on + strand at 470.693 kb on + strand at 470.693 kb on + strand at 470.693 kb on + strand at 470.694 kb on - strand at 470.694 kb on - strand at 470.694 kb on - strand at 470.694 kb on - strand at 470.782 kb on + strand at 470.783 kb on - strand at 470.783 kb on - strand at 470.831 kb on - strand at 470.947 kb on + strand at 470.947 kb on + strand at 470.947 kb on + strand at 470.947 kb on + strand at 470.947 kb on + strand at 470.947 kb on + strand at 470.947 kb on + strand at 470.947 kb on + strand at 470.948 kb on - strand at 470.948 kb on - strand at 470.948 kb on - strand at 470.948 kb on - strand at 470.948 kb on - strand at 470.989 kb on + strand at 471.123 kb on + strand at 471.123 kb on + strand at 471.123 kb on + strand at 471.123 kb on + strand at 471.124 kb on - strand at 471.124 kb on - strand at 471.135 kb on + strand at 471.135 kb on + strand at 471.135 kb on + strand at 471.174 kb on + strand at 471.174 kb on + strand at 471.174 kb on + strand at 471.174 kb on + strand at 471.174 kb on + strand at 471.175 kb on - strand at 471.175 kb on - strand at 471.175 kb on - strand at 471.175 kb on - strand at 471.175 kb on - strand at 471.175 kb on - strand at 471.175 kb on - strand at 471.184 kb on + strand at 471.184 kb on + strand at 471.184 kb on + strand at 471.184 kb on + strand at 471.184 kb on + strand at 471.185 kb on - strand at 471.185 kb on - strand at 471.185 kb on - strand at 471.185 kb on - strand at 471.188 kb on + strand at 471.189 kb on - strand at 471.189 kb on - strand at 471.189 kb on - strand at 471.189 kb on - strand at 471.189 kb on - strand at 471.189 kb on - strand at 471.189 kb on - strand at 471.191 kb on + strand at 471.191 kb on + strand at 471.191 kb on + strand at 471.192 kb on - strand at 471.192 kb on - strand at 471.192 kb on - strand at 471.227 kb on - strand, within Psest_0434 at 471.227 kb on - strand, within Psest_0434 at 471.263 kb on - strand, within Psest_0434 at 471.263 kb on - strand, within Psest_0434 at 471.263 kb on - strand, within Psest_0434 at 471.306 kb on + strand, within Psest_0434 at 471.306 kb on + strand, within Psest_0434 at 471.306 kb on + strand, within Psest_0434 at 471.307 kb on - strand, within Psest_0434 at 471.307 kb on - strand, within Psest_0434 at 471.309 kb on + strand, within Psest_0434 at 471.309 kb on + strand, within Psest_0434 at 471.378 kb on - strand, within Psest_0434 at 471.395 kb on - strand, within Psest_0434 at 471.395 kb on - strand, within Psest_0434 at 471.395 kb on - strand, within Psest_0434 at 471.429 kb on + strand, within Psest_0434 at 471.430 kb on - strand, within Psest_0434 at 471.443 kb on + strand, within Psest_0434 at 471.443 kb on + strand, within Psest_0434 at 471.444 kb on - strand, within Psest_0434 at 471.444 kb on - strand, within Psest_0434 at 471.444 kb on - strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.521 kb on - strand, within Psest_0434 at 471.551 kb on - strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.555 kb on - strand, within Psest_0434 at 471.574 kb on - strand, within Psest_0434 at 471.597 kb on + strand, within Psest_0434 at 471.597 kb on + strand, within Psest_0434 at 471.598 kb on - strand, within Psest_0434 at 471.598 kb on - strand, within Psest_0434 at 471.598 kb on - strand, within Psest_0434
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 1 remove 468,847 + -1.1 468,848 - -1.2 468,849 + -0.2 468,849 + -0.2 468,849 + +1.0 468,849 + -0.0 468,849 + +0.1 468,849 + -0.7 468,850 - +0.2 468,850 - -1.1 468,850 - -0.5 468,850 - -0.7 468,850 - +0.0 468,861 + +0.3 468,862 - -1.3 469,038 + Psest_0431 0.21 +0.6 469,245 - Psest_0431 0.41 -0.8 469,267 + Psest_0431 0.43 +0.4 469,267 + Psest_0431 0.43 -2.5 469,506 + Psest_0431 0.67 -1.5 469,527 + Psest_0431 0.69 -0.3 469,527 + Psest_0431 0.69 -0.9 469,527 + Psest_0431 0.69 -0.2 469,527 + Psest_0431 0.69 -1.7 469,527 + Psest_0431 0.69 -2.0 469,528 - Psest_0431 0.69 +0.2 469,528 - Psest_0431 0.69 -0.3 469,528 - Psest_0431 0.69 +0.3 469,528 - Psest_0431 0.69 -0.3 469,528 - Psest_0431 0.69 +0.2 469,528 - Psest_0431 0.69 -1.0 469,548 + Psest_0431 0.71 -2.5 469,602 - Psest_0431 0.76 +0.1 469,614 + Psest_0431 0.78 -0.8 469,614 + Psest_0431 0.78 +0.4 469,615 - Psest_0431 0.78 +0.5 469,615 - Psest_0431 0.78 -1.1 469,615 - Psest_0431 0.78 -1.0 469,615 - Psest_0431 0.78 -0.0 469,687 + Psest_0431 0.85 +0.9 469,688 - Psest_0431 0.85 -1.3 469,688 - Psest_0431 0.85 -1.8 469,707 + Psest_0431 0.87 +0.2 469,707 + Psest_0431 0.87 -1.1 469,707 + Psest_0431 0.87 -2.0 469,707 + Psest_0431 0.87 +0.2 469,707 + Psest_0431 0.87 -0.8 469,707 + Psest_0431 0.87 +0.9 469,707 + Psest_0431 0.87 +0.2 469,707 + Psest_0431 0.87 -0.2 469,708 - Psest_0431 0.87 -0.4 469,708 - Psest_0431 0.87 -0.5 469,708 - Psest_0431 0.87 +0.1 469,708 - Psest_0431 0.87 -0.2 469,708 - Psest_0431 0.87 +0.8 469,708 - Psest_0431 0.87 +0.9 469,708 - Psest_0431 0.87 +0.8 469,708 - Psest_0431 0.87 -0.5 469,866 - -0.2 470,008 - Psest_0432 0.20 +0.3 470,072 + Psest_0432 0.27 +0.0 470,128 + Psest_0432 0.34 -0.0 470,128 + Psest_0432 0.34 -0.5 470,128 + Psest_0432 0.34 +0.2 470,128 + Psest_0432 0.34 -0.6 470,128 + Psest_0432 0.34 -0.4 470,129 - Psest_0432 0.34 -0.2 470,129 - Psest_0432 0.34 -0.0 470,129 - Psest_0432 0.34 -1.6 470,129 - Psest_0432 0.34 -0.0 470,129 - Psest_0432 0.34 +1.5 470,129 - Psest_0432 0.34 -0.4 470,129 - Psest_0432 0.34 -0.7 470,129 - Psest_0432 0.34 -0.1 470,129 - Psest_0432 0.34 +0.7 470,155 + Psest_0432 0.37 -0.2 470,155 + Psest_0432 0.37 -1.4 470,155 + Psest_0432 0.37 +0.0 470,155 + Psest_0432 0.37 +0.2 470,155 + Psest_0432 0.37 -0.1 470,155 + Psest_0432 0.37 -0.1 470,156 - Psest_0432 0.37 +1.1 470,156 - Psest_0432 0.37 -0.5 470,156 - Psest_0432 0.37 -0.6 470,156 - Psest_0432 0.37 -1.3 470,156 - Psest_0432 0.37 -0.5 470,156 - Psest_0432 0.37 +0.4 470,229 - Psest_0432 0.45 -0.5 470,229 - Psest_0432 0.45 -0.2 470,229 - Psest_0432 0.45 -0.5 470,271 - Psest_0432 0.50 +0.4 470,363 + Psest_0432 0.61 -1.2 470,363 + Psest_0432 0.61 -0.4 470,363 + Psest_0432 0.61 -1.4 470,363 + Psest_0432 0.61 -0.6 470,363 + Psest_0432 0.61 +0.2 470,363 + Psest_0432 0.61 -0.5 470,363 + Psest_0432 0.61 +0.2 470,363 + Psest_0432 0.61 -1.5 470,363 + Psest_0432 0.61 -0.9 470,364 - Psest_0432 0.61 -2.1 470,364 - Psest_0432 0.61 -1.3 470,364 - Psest_0432 0.61 +0.1 470,364 - Psest_0432 0.61 -2.8 470,364 - Psest_0432 0.61 -0.4 470,440 + Psest_0432 0.70 -0.7 470,440 + Psest_0432 0.70 -0.3 470,440 + Psest_0432 0.70 -0.6 470,441 - Psest_0432 0.70 +0.4 470,441 - Psest_0432 0.70 -1.2 470,552 + Psest_0432 0.83 -2.2 470,552 + Psest_0432 0.83 -2.0 470,552 + Psest_0432 0.83 -0.8 470,553 - Psest_0432 0.83 -2.1 470,583 - Psest_0432 0.86 -1.2 470,675 + -0.6 470,675 + -0.3 470,675 + -0.3 470,675 + -0.4 470,676 - -0.3 470,676 - -0.4 470,693 + +0.1 470,693 + -0.9 470,693 + -0.3 470,693 + -0.5 470,693 + -0.3 470,693 + -0.2 470,694 - -1.0 470,694 - +2.0 470,694 - -1.2 470,694 - -0.2 470,782 + -2.6 470,783 - -0.3 470,783 - -0.3 470,831 - -0.5 470,947 + -2.1 470,947 + +0.3 470,947 + -1.7 470,947 + -0.8 470,947 + -1.1 470,947 + -0.9 470,947 + -0.4 470,947 + -1.7 470,948 - -0.7 470,948 - -1.6 470,948 - +0.5 470,948 - -0.2 470,948 - +0.0 470,989 + +0.2 471,123 + -0.8 471,123 + -0.9 471,123 + +1.2 471,123 + -0.0 471,124 - -1.0 471,124 - -1.0 471,135 + -1.9 471,135 + -0.2 471,135 + -0.8 471,174 + -3.3 471,174 + -2.0 471,174 + -3.3 471,174 + -1.2 471,174 + -0.6 471,175 - -1.5 471,175 - +0.1 471,175 - +0.7 471,175 - -0.6 471,175 - -3.6 471,175 - -1.3 471,175 - -0.1 471,184 + -1.9 471,184 + +0.5 471,184 + -0.8 471,184 + -1.7 471,184 + -0.5 471,185 - -0.6 471,185 - -3.2 471,185 - +0.5 471,185 - -0.4 471,188 + -1.4 471,189 - -0.6 471,189 - +0.0 471,189 - -0.1 471,189 - -0.9 471,189 - -3.2 471,189 - -0.1 471,189 - -1.6 471,191 + -1.4 471,191 + -0.6 471,191 + -0.8 471,192 - +0.9 471,192 - -1.6 471,192 - -0.5 471,227 - Psest_0434 0.15 -0.5 471,227 - Psest_0434 0.15 -1.2 471,263 - Psest_0434 0.21 +0.5 471,263 - Psest_0434 0.21 -0.6 471,263 - Psest_0434 0.21 +0.1 471,306 + Psest_0434 0.27 -0.8 471,306 + Psest_0434 0.27 -1.0 471,306 + Psest_0434 0.27 -0.1 471,307 - Psest_0434 0.28 -0.1 471,307 - Psest_0434 0.28 -0.6 471,309 + Psest_0434 0.28 +0.4 471,309 + Psest_0434 0.28 +0.4 471,378 - Psest_0434 0.39 -3.6 471,395 - Psest_0434 0.42 -0.1 471,395 - Psest_0434 0.42 -2.0 471,395 - Psest_0434 0.42 +0.0 471,429 + Psest_0434 0.47 -1.7 471,430 - Psest_0434 0.47 -0.4 471,443 + Psest_0434 0.49 -0.1 471,443 + Psest_0434 0.49 -1.1 471,444 - Psest_0434 0.49 -1.3 471,444 - Psest_0434 0.49 -0.9 471,444 - Psest_0434 0.49 -1.3 471,460 + Psest_0434 0.52 -0.8 471,460 + Psest_0434 0.52 -0.9 471,460 + Psest_0434 0.52 +0.4 471,460 + Psest_0434 0.52 +0.4 471,460 + Psest_0434 0.52 +0.1 471,460 + Psest_0434 0.52 +0.1 471,460 + Psest_0434 0.52 -2.9 471,461 - Psest_0434 0.52 -0.7 471,461 - Psest_0434 0.52 -0.4 471,461 - Psest_0434 0.52 -1.8 471,461 - Psest_0434 0.52 -0.4 471,461 - Psest_0434 0.52 -2.1 471,461 - Psest_0434 0.52 -1.6 471,461 - Psest_0434 0.52 -1.6 471,494 + Psest_0434 0.57 -0.7 471,494 + Psest_0434 0.57 +0.1 471,494 + Psest_0434 0.57 +0.1 471,494 + Psest_0434 0.57 -0.2 471,494 + Psest_0434 0.57 -1.0 471,494 + Psest_0434 0.57 -2.7 471,494 + Psest_0434 0.57 -0.6 471,494 + Psest_0434 0.57 -0.9 471,494 + Psest_0434 0.57 -0.7 471,494 + Psest_0434 0.57 -0.4 471,494 + Psest_0434 0.57 -0.6 471,494 + Psest_0434 0.57 -0.6 471,495 - Psest_0434 0.58 -1.0 471,495 - Psest_0434 0.58 -0.8 471,495 - Psest_0434 0.58 +0.1 471,495 - Psest_0434 0.58 -0.0 471,495 - Psest_0434 0.58 -0.6 471,495 - Psest_0434 0.58 -0.7 471,495 - Psest_0434 0.58 -0.7 471,495 - Psest_0434 0.58 +0.4 471,495 - Psest_0434 0.58 -1.0 471,521 - Psest_0434 0.62 -2.3 471,551 - Psest_0434 0.67 -0.8 471,554 + Psest_0434 0.67 +0.2 471,554 + Psest_0434 0.67 -0.2 471,554 + Psest_0434 0.67 -0.5 471,554 + Psest_0434 0.67 -1.9 471,554 + Psest_0434 0.67 -0.2 471,554 + Psest_0434 0.67 -0.4 471,554 + Psest_0434 0.67 -0.6 471,554 + Psest_0434 0.67 -0.8 471,555 - Psest_0434 0.67 -1.9 471,574 - Psest_0434 0.70 -0.5 471,597 + Psest_0434 0.74 -2.1 471,597 + Psest_0434 0.74 -0.1 471,598 - Psest_0434 0.74 -0.9 471,598 - Psest_0434 0.74 -0.4 471,598 - Psest_0434 0.74 -1.1
Or see this region's nucleotide sequence