Experiment: LB 30C timecourse2 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3164 and Psest_3165 are separated by 231 nucleotides Psest_3165 and Psest_3166 are separated by 93 nucleotides
Psest_3164: Psest_3164 - Predicted esterase, at 3,337,012 to 3,337,668
_3164
Psest_3165: Psest_3165 - diguanylate cyclase (GGDEF) domain, at 3,337,900 to 3,338,760
_3165
Psest_3166: Psest_3166 - Superfamily II DNA and RNA helicases, at 3,338,854 to 3,340,287
_3166
Position (kb)
3337
3338
3339 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3336.913 kb on + strand at 3337.214 kb on - strand, within Psest_3164 at 3337.214 kb on - strand, within Psest_3164 at 3337.432 kb on + strand, within Psest_3164 at 3337.433 kb on - strand, within Psest_3164 at 3337.433 kb on - strand, within Psest_3164 at 3337.433 kb on - strand, within Psest_3164 at 3337.433 kb on - strand, within Psest_3164 at 3337.523 kb on + strand, within Psest_3164 at 3337.524 kb on - strand, within Psest_3164 at 3337.559 kb on + strand, within Psest_3164 at 3337.559 kb on + strand, within Psest_3164 at 3337.559 kb on + strand, within Psest_3164 at 3337.559 kb on + strand, within Psest_3164 at 3337.560 kb on - strand, within Psest_3164 at 3337.695 kb on + strand at 3337.696 kb on - strand at 3337.696 kb on - strand at 3337.696 kb on - strand at 3337.702 kb on + strand at 3337.719 kb on + strand at 3337.720 kb on - strand at 3337.720 kb on - strand at 3337.971 kb on + strand at 3337.971 kb on + strand at 3337.971 kb on + strand at 3337.972 kb on - strand at 3337.972 kb on - strand at 3337.972 kb on - strand at 3337.972 kb on - strand at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.988 kb on + strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.989 kb on - strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.990 kb on + strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3337.991 kb on - strand, within Psest_3165 at 3338.013 kb on - strand, within Psest_3165 at 3338.037 kb on + strand, within Psest_3165 at 3338.053 kb on + strand, within Psest_3165 at 3338.116 kb on + strand, within Psest_3165 at 3338.219 kb on + strand, within Psest_3165 at 3338.219 kb on + strand, within Psest_3165 at 3338.219 kb on + strand, within Psest_3165 at 3338.219 kb on + strand, within Psest_3165 at 3338.219 kb on + strand, within Psest_3165 at 3338.219 kb on + strand, within Psest_3165 at 3338.219 kb on + strand, within Psest_3165 at 3338.220 kb on - strand, within Psest_3165 at 3338.220 kb on - strand, within Psest_3165 at 3338.220 kb on - strand, within Psest_3165 at 3338.220 kb on - strand, within Psest_3165 at 3338.220 kb on - strand, within Psest_3165 at 3338.322 kb on + strand, within Psest_3165 at 3338.322 kb on + strand, within Psest_3165 at 3338.322 kb on + strand, within Psest_3165 at 3338.322 kb on + strand, within Psest_3165 at 3338.322 kb on + strand, within Psest_3165 at 3338.322 kb on + strand, within Psest_3165 at 3338.322 kb on + strand, within Psest_3165 at 3338.323 kb on - strand, within Psest_3165 at 3338.323 kb on - strand, within Psest_3165 at 3338.323 kb on - strand, within Psest_3165 at 3338.323 kb on - strand, within Psest_3165 at 3338.323 kb on - strand, within Psest_3165 at 3338.323 kb on - strand, within Psest_3165 at 3338.323 kb on - strand, within Psest_3165 at 3338.323 kb on - strand, within Psest_3165 at 3338.323 kb on - strand, within Psest_3165 at 3338.323 kb on - strand, within Psest_3165 at 3338.407 kb on + strand, within Psest_3165 at 3338.407 kb on + strand, within Psest_3165 at 3338.407 kb on + strand, within Psest_3165 at 3338.566 kb on - strand, within Psest_3165 at 3338.651 kb on + strand, within Psest_3165 at 3338.696 kb on + strand at 3338.696 kb on + strand at 3338.697 kb on - strand at 3338.697 kb on - strand at 3338.720 kb on - strand at 3338.720 kb on - strand at 3338.810 kb on + strand at 3338.810 kb on + strand at 3338.810 kb on + strand at 3338.811 kb on - strand at 3338.834 kb on - strand at 3338.834 kb on - strand at 3338.834 kb on - strand at 3338.877 kb on - strand at 3339.018 kb on + strand, within Psest_3166 at 3339.019 kb on - strand, within Psest_3166 at 3339.099 kb on - strand, within Psest_3166 at 3339.184 kb on + strand, within Psest_3166 at 3339.185 kb on - strand, within Psest_3166 at 3339.218 kb on - strand, within Psest_3166 at 3339.285 kb on + strand, within Psest_3166 at 3339.285 kb on + strand, within Psest_3166 at 3339.335 kb on - strand, within Psest_3166 at 3339.422 kb on - strand, within Psest_3166 at 3339.422 kb on - strand, within Psest_3166 at 3339.422 kb on - strand, within Psest_3166 at 3339.422 kb on - strand, within Psest_3166 at 3339.422 kb on - strand, within Psest_3166 at 3339.422 kb on - strand, within Psest_3166
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 1 remove 3,336,913 + -0.8 3,337,214 - Psest_3164 0.31 -0.4 3,337,214 - Psest_3164 0.31 -0.3 3,337,432 + Psest_3164 0.64 +0.4 3,337,433 - Psest_3164 0.64 -0.2 3,337,433 - Psest_3164 0.64 -0.7 3,337,433 - Psest_3164 0.64 +1.3 3,337,433 - Psest_3164 0.64 -1.3 3,337,523 + Psest_3164 0.78 -0.9 3,337,524 - Psest_3164 0.78 -0.0 3,337,559 + Psest_3164 0.83 +1.1 3,337,559 + Psest_3164 0.83 -2.4 3,337,559 + Psest_3164 0.83 -0.8 3,337,559 + Psest_3164 0.83 -1.0 3,337,560 - Psest_3164 0.83 -0.4 3,337,695 + -1.1 3,337,696 - +0.5 3,337,696 - -2.5 3,337,696 - -0.9 3,337,702 + -0.7 3,337,719 + -1.3 3,337,720 - +0.3 3,337,720 - -0.1 3,337,971 + -1.9 3,337,971 + -0.1 3,337,971 + -0.4 3,337,972 - +0.2 3,337,972 - +0.3 3,337,972 - -0.1 3,337,972 - +0.2 3,337,988 + Psest_3165 0.10 +0.3 3,337,988 + Psest_3165 0.10 -0.0 3,337,988 + Psest_3165 0.10 +0.8 3,337,988 + Psest_3165 0.10 -1.0 3,337,988 + Psest_3165 0.10 +0.4 3,337,988 + Psest_3165 0.10 -0.2 3,337,988 + Psest_3165 0.10 -0.1 3,337,988 + Psest_3165 0.10 -1.3 3,337,988 + Psest_3165 0.10 -0.7 3,337,988 + Psest_3165 0.10 +0.1 3,337,988 + Psest_3165 0.10 -1.8 3,337,988 + Psest_3165 0.10 +2.1 3,337,988 + Psest_3165 0.10 +0.0 3,337,988 + Psest_3165 0.10 -1.6 3,337,988 + Psest_3165 0.10 +0.6 3,337,988 + Psest_3165 0.10 +0.7 3,337,988 + Psest_3165 0.10 -0.5 3,337,988 + Psest_3165 0.10 -1.0 3,337,988 + Psest_3165 0.10 -0.1 3,337,988 + Psest_3165 0.10 -2.2 3,337,988 + Psest_3165 0.10 -0.3 3,337,988 + Psest_3165 0.10 -1.2 3,337,988 + Psest_3165 0.10 -0.6 3,337,988 + Psest_3165 0.10 -0.9 3,337,989 - Psest_3165 0.10 -0.8 3,337,989 - Psest_3165 0.10 -2.0 3,337,989 - Psest_3165 0.10 -1.5 3,337,989 - Psest_3165 0.10 +0.5 3,337,989 - Psest_3165 0.10 +1.6 3,337,989 - Psest_3165 0.10 -2.4 3,337,989 - Psest_3165 0.10 -1.6 3,337,989 - Psest_3165 0.10 -0.5 3,337,989 - Psest_3165 0.10 +1.5 3,337,989 - Psest_3165 0.10 +0.5 3,337,989 - Psest_3165 0.10 -0.0 3,337,989 - Psest_3165 0.10 -0.6 3,337,989 - Psest_3165 0.10 -0.2 3,337,989 - Psest_3165 0.10 -0.2 3,337,989 - Psest_3165 0.10 +0.2 3,337,989 - Psest_3165 0.10 +0.5 3,337,989 - Psest_3165 0.10 -3.8 3,337,989 - Psest_3165 0.10 -0.5 3,337,989 - Psest_3165 0.10 +0.3 3,337,989 - Psest_3165 0.10 +0.6 3,337,990 + Psest_3165 0.10 -0.3 3,337,990 + Psest_3165 0.10 -0.2 3,337,990 + Psest_3165 0.10 -0.3 3,337,990 + Psest_3165 0.10 -3.3 3,337,990 + Psest_3165 0.10 +0.6 3,337,990 + Psest_3165 0.10 +0.9 3,337,990 + Psest_3165 0.10 +0.5 3,337,990 + Psest_3165 0.10 -0.5 3,337,990 + Psest_3165 0.10 -0.6 3,337,990 + Psest_3165 0.10 -1.8 3,337,990 + Psest_3165 0.10 +0.3 3,337,990 + Psest_3165 0.10 -0.2 3,337,990 + Psest_3165 0.10 -1.2 3,337,990 + Psest_3165 0.10 -0.4 3,337,990 + Psest_3165 0.10 +1.0 3,337,990 + Psest_3165 0.10 +0.0 3,337,990 + Psest_3165 0.10 -0.3 3,337,990 + Psest_3165 0.10 -1.3 3,337,990 + Psest_3165 0.10 +1.0 3,337,990 + Psest_3165 0.10 -0.9 3,337,990 + Psest_3165 0.10 -0.5 3,337,990 + Psest_3165 0.10 -2.3 3,337,990 + Psest_3165 0.10 -1.2 3,337,990 + Psest_3165 0.10 +0.3 3,337,990 + Psest_3165 0.10 -0.4 3,337,990 + Psest_3165 0.10 -1.4 3,337,990 + Psest_3165 0.10 +0.3 3,337,990 + Psest_3165 0.10 -0.4 3,337,990 + Psest_3165 0.10 -0.6 3,337,990 + Psest_3165 0.10 -0.0 3,337,990 + Psest_3165 0.10 -0.5 3,337,990 + Psest_3165 0.10 +0.3 3,337,990 + Psest_3165 0.10 -0.5 3,337,991 - Psest_3165 0.11 -0.3 3,337,991 - Psest_3165 0.11 -2.1 3,337,991 - Psest_3165 0.11 -2.5 3,337,991 - Psest_3165 0.11 -0.0 3,337,991 - Psest_3165 0.11 -0.9 3,337,991 - Psest_3165 0.11 +1.5 3,337,991 - Psest_3165 0.11 -0.2 3,337,991 - Psest_3165 0.11 +0.1 3,337,991 - Psest_3165 0.11 +0.4 3,337,991 - Psest_3165 0.11 -1.5 3,337,991 - Psest_3165 0.11 +0.3 3,337,991 - Psest_3165 0.11 +0.5 3,337,991 - Psest_3165 0.11 -0.1 3,337,991 - Psest_3165 0.11 -0.8 3,337,991 - Psest_3165 0.11 -1.1 3,337,991 - Psest_3165 0.11 -2.9 3,337,991 - Psest_3165 0.11 +0.3 3,337,991 - Psest_3165 0.11 -1.1 3,337,991 - Psest_3165 0.11 -1.2 3,337,991 - Psest_3165 0.11 -0.1 3,337,991 - Psest_3165 0.11 -1.4 3,337,991 - Psest_3165 0.11 -0.8 3,337,991 - Psest_3165 0.11 +0.2 3,337,991 - Psest_3165 0.11 -0.9 3,337,991 - Psest_3165 0.11 -0.3 3,337,991 - Psest_3165 0.11 -2.4 3,337,991 - Psest_3165 0.11 -0.9 3,337,991 - Psest_3165 0.11 -0.5 3,337,991 - Psest_3165 0.11 -0.6 3,338,013 - Psest_3165 0.13 +0.5 3,338,037 + Psest_3165 0.16 -2.1 3,338,053 + Psest_3165 0.18 -1.4 3,338,116 + Psest_3165 0.25 -0.5 3,338,219 + Psest_3165 0.37 +0.4 3,338,219 + Psest_3165 0.37 +0.3 3,338,219 + Psest_3165 0.37 +0.5 3,338,219 + Psest_3165 0.37 -0.1 3,338,219 + Psest_3165 0.37 -0.3 3,338,219 + Psest_3165 0.37 +1.3 3,338,219 + Psest_3165 0.37 -0.3 3,338,220 - Psest_3165 0.37 -0.3 3,338,220 - Psest_3165 0.37 -1.4 3,338,220 - Psest_3165 0.37 -0.9 3,338,220 - Psest_3165 0.37 -1.3 3,338,220 - Psest_3165 0.37 -0.0 3,338,322 + Psest_3165 0.49 -0.9 3,338,322 + Psest_3165 0.49 -0.4 3,338,322 + Psest_3165 0.49 -1.1 3,338,322 + Psest_3165 0.49 +0.5 3,338,322 + Psest_3165 0.49 -2.5 3,338,322 + Psest_3165 0.49 -0.2 3,338,322 + Psest_3165 0.49 -2.4 3,338,323 - Psest_3165 0.49 -0.4 3,338,323 - Psest_3165 0.49 +0.6 3,338,323 - Psest_3165 0.49 -1.2 3,338,323 - Psest_3165 0.49 -0.5 3,338,323 - Psest_3165 0.49 +0.7 3,338,323 - Psest_3165 0.49 -1.5 3,338,323 - Psest_3165 0.49 -0.1 3,338,323 - Psest_3165 0.49 -0.1 3,338,323 - Psest_3165 0.49 -1.6 3,338,323 - Psest_3165 0.49 -0.6 3,338,407 + Psest_3165 0.59 +0.3 3,338,407 + Psest_3165 0.59 -0.5 3,338,407 + Psest_3165 0.59 -1.1 3,338,566 - Psest_3165 0.77 +0.3 3,338,651 + Psest_3165 0.87 -0.7 3,338,696 + +0.1 3,338,696 + -1.3 3,338,697 - -1.0 3,338,697 - -0.6 3,338,720 - +0.6 3,338,720 - -1.8 3,338,810 + -1.1 3,338,810 + +0.4 3,338,810 + -0.1 3,338,811 - +0.3 3,338,834 - -0.7 3,338,834 - -0.1 3,338,834 - -0.7 3,338,877 - -0.7 3,339,018 + Psest_3166 0.11 -1.9 3,339,019 - Psest_3166 0.12 -2.2 3,339,099 - Psest_3166 0.17 +0.5 3,339,184 + Psest_3166 0.23 -0.8 3,339,185 - Psest_3166 0.23 -0.2 3,339,218 - Psest_3166 0.25 -1.1 3,339,285 + Psest_3166 0.30 -0.1 3,339,285 + Psest_3166 0.30 -1.4 3,339,335 - Psest_3166 0.34 -1.6 3,339,422 - Psest_3166 0.40 -0.5 3,339,422 - Psest_3166 0.40 -1.6 3,339,422 - Psest_3166 0.40 -2.1 3,339,422 - Psest_3166 0.40 -0.6 3,339,422 - Psest_3166 0.40 -1.1 3,339,422 - Psest_3166 0.40 -1.7
Or see this region's nucleotide sequence