Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2657 and HP15_2658 are separated by 5 nucleotides HP15_2658 and HP15_2659 are separated by 161 nucleotides HP15_2659 and HP15_2660 overlap by 1 nucleotides HP15_2660 and HP15_2661 overlap by 4 nucleotides
HP15_2657: HP15_2657 - threonine efflux protein, at 2,807,285 to 2,807,905
_2657
HP15_2658: HP15_2658 - nucleoside-diphosphate-sugar epimerase, at 2,807,911 to 2,808,582
_2658
HP15_2659: HP15_2659 - Citrate uptake transporter, large transmembrane component TctA (from data) , at 2,808,744 to 2,810,270
_2659
HP15_2660: HP15_2660 - Citrate uptake transporter, small transmembrane component TctB (from data) , at 2,810,270 to 2,810,716
_2660
HP15_2661: HP15_2661 - Citrate uptake transporter, substrate-binding component TctC (from data) , at 2,810,713 to 2,811,699
_2661
Position (kb)
2808
2809
2810
2811 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2808.016 kb on - strand, within HP15_2658 at 2808.102 kb on + strand, within HP15_2658 at 2808.108 kb on - strand, within HP15_2658 at 2808.139 kb on - strand, within HP15_2658 at 2808.144 kb on - strand, within HP15_2658 at 2808.170 kb on - strand, within HP15_2658 at 2808.319 kb on - strand, within HP15_2658 at 2808.425 kb on - strand, within HP15_2658 at 2808.537 kb on - strand at 2808.607 kb on + strand at 2808.655 kb on + strand at 2808.663 kb on - strand at 2808.868 kb on + strand at 2809.036 kb on - strand, within HP15_2659 at 2809.078 kb on - strand, within HP15_2659 at 2809.108 kb on + strand, within HP15_2659 at 2809.357 kb on + strand, within HP15_2659 at 2809.676 kb on + strand, within HP15_2659 at 2809.843 kb on - strand, within HP15_2659 at 2809.847 kb on + strand, within HP15_2659 at 2810.390 kb on - strand, within HP15_2660 at 2810.416 kb on + strand, within HP15_2660 at 2810.647 kb on - strand, within HP15_2660 at 2810.852 kb on - strand, within HP15_2661 at 2811.042 kb on + strand, within HP15_2661 at 2811.253 kb on + strand, within HP15_2661
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 2,808,016 - HP15_2658 0.16 +0.4 2,808,102 + HP15_2658 0.28 -1.0 2,808,108 - HP15_2658 0.29 -0.2 2,808,139 - HP15_2658 0.34 +0.5 2,808,144 - HP15_2658 0.35 -0.2 2,808,170 - HP15_2658 0.39 -0.1 2,808,319 - HP15_2658 0.61 +0.5 2,808,425 - HP15_2658 0.76 -0.1 2,808,537 - +0.5 2,808,607 + +0.7 2,808,655 + -0.2 2,808,663 - +0.8 2,808,868 + -2.0 2,809,036 - HP15_2659 0.19 -3.4 2,809,078 - HP15_2659 0.22 -3.3 2,809,108 + HP15_2659 0.24 -3.2 2,809,357 + HP15_2659 0.40 -2.6 2,809,676 + HP15_2659 0.61 -4.0 2,809,843 - HP15_2659 0.72 -3.5 2,809,847 + HP15_2659 0.72 -5.1 2,810,390 - HP15_2660 0.27 -4.0 2,810,416 + HP15_2660 0.33 -1.0 2,810,647 - HP15_2660 0.84 -2.9 2,810,852 - HP15_2661 0.14 -2.2 2,811,042 + HP15_2661 0.33 -1.2 2,811,253 + HP15_2661 0.55 +0.2
Or see this region's nucleotide sequence