Strain Fitness in Marinobacter adhaerens HP15 around HP15_2659

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2657 and HP15_2658 are separated by 5 nucleotidesHP15_2658 and HP15_2659 are separated by 161 nucleotidesHP15_2659 and HP15_2660 overlap by 1 nucleotidesHP15_2660 and HP15_2661 overlap by 4 nucleotides HP15_2657: HP15_2657 - threonine efflux protein, at 2,807,285 to 2,807,905 _2657 HP15_2658: HP15_2658 - nucleoside-diphosphate-sugar epimerase, at 2,807,911 to 2,808,582 _2658 HP15_2659: HP15_2659 - Citrate uptake transporter, large transmembrane component TctA (from data), at 2,808,744 to 2,810,270 _2659 HP15_2660: HP15_2660 - Citrate uptake transporter, small transmembrane component TctB (from data), at 2,810,270 to 2,810,716 _2660 HP15_2661: HP15_2661 - Citrate uptake transporter, substrate-binding component TctC (from data), at 2,810,713 to 2,811,699 _2661 Position (kb) 2808 2809 2810 2811Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2808.016 kb on - strand, within HP15_2658at 2808.102 kb on + strand, within HP15_2658at 2808.108 kb on - strand, within HP15_2658at 2808.139 kb on - strand, within HP15_2658at 2808.144 kb on - strand, within HP15_2658at 2808.170 kb on - strand, within HP15_2658at 2808.319 kb on - strand, within HP15_2658at 2808.425 kb on - strand, within HP15_2658at 2808.537 kb on - strandat 2808.607 kb on + strandat 2808.655 kb on + strandat 2808.663 kb on - strandat 2808.868 kb on + strandat 2809.036 kb on - strand, within HP15_2659at 2809.078 kb on - strand, within HP15_2659at 2809.108 kb on + strand, within HP15_2659at 2809.357 kb on + strand, within HP15_2659at 2809.676 kb on + strand, within HP15_2659at 2809.843 kb on - strand, within HP15_2659at 2809.847 kb on + strand, within HP15_2659at 2810.390 kb on - strand, within HP15_2660at 2810.416 kb on + strand, within HP15_2660at 2810.647 kb on - strand, within HP15_2660at 2810.852 kb on - strand, within HP15_2661at 2811.042 kb on + strand, within HP15_2661at 2811.253 kb on + strand, within HP15_2661

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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2,808,016 - HP15_2658 0.16 +0.4
2,808,102 + HP15_2658 0.28 -1.0
2,808,108 - HP15_2658 0.29 -0.2
2,808,139 - HP15_2658 0.34 +0.5
2,808,144 - HP15_2658 0.35 -0.2
2,808,170 - HP15_2658 0.39 -0.1
2,808,319 - HP15_2658 0.61 +0.5
2,808,425 - HP15_2658 0.76 -0.1
2,808,537 - +0.5
2,808,607 + +0.7
2,808,655 + -0.2
2,808,663 - +0.8
2,808,868 + -2.0
2,809,036 - HP15_2659 0.19 -3.4
2,809,078 - HP15_2659 0.22 -3.3
2,809,108 + HP15_2659 0.24 -3.2
2,809,357 + HP15_2659 0.40 -2.6
2,809,676 + HP15_2659 0.61 -4.0
2,809,843 - HP15_2659 0.72 -3.5
2,809,847 + HP15_2659 0.72 -5.1
2,810,390 - HP15_2660 0.27 -4.0
2,810,416 + HP15_2660 0.33 -1.0
2,810,647 - HP15_2660 0.84 -2.9
2,810,852 - HP15_2661 0.14 -2.2
2,811,042 + HP15_2661 0.33 -1.2
2,811,253 + HP15_2661 0.55 +0.2

Or see this region's nucleotide sequence