Strain Fitness in Marinobacter adhaerens HP15 around HP15_2582

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2581 and HP15_2582 overlap by 1 nucleotidesHP15_2582 and HP15_2583 overlap by 4 nucleotides HP15_2581: HP15_2581 - monovalent cation/H+ antiporter subunit A, at 2,730,699 to 2,733,500 _2581 HP15_2582: HP15_2582 - NADH-ubiquinone oxidoreductase, chain 4L, at 2,733,500 to 2,733,868 _2582 HP15_2583: HP15_2583 - monovalent cation/H+ antiporter subunit D, at 2,733,865 to 2,735,382 _2583 Position (kb) 2733 2734Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2732.609 kb on + strand, within HP15_2581at 2732.664 kb on - strand, within HP15_2581at 2733.259 kb on + strandat 2733.259 kb on + strandat 2733.421 kb on + strandat 2733.448 kb on - strandat 2733.448 kb on - strandat 2733.459 kb on + strandat 2733.520 kb on + strandat 2733.672 kb on + strand, within HP15_2582at 2733.710 kb on + strand, within HP15_2582at 2733.720 kb on - strand, within HP15_2582at 2733.728 kb on - strand, within HP15_2582at 2733.922 kb on - strandat 2733.959 kb on + strandat 2734.328 kb on - strand, within HP15_2583at 2734.422 kb on + strand, within HP15_2583at 2734.525 kb on - strand, within HP15_2583at 2734.537 kb on + strand, within HP15_2583at 2734.555 kb on + strand, within HP15_2583at 2734.837 kb on - strand, within HP15_2583

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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2,732,609 + HP15_2581 0.68 -0.1
2,732,664 - HP15_2581 0.70 -2.5
2,733,259 + -1.5
2,733,259 + -4.3
2,733,421 + -1.2
2,733,448 - -1.6
2,733,448 - -3.2
2,733,459 + -0.2
2,733,520 + -2.3
2,733,672 + HP15_2582 0.47 -4.0
2,733,710 + HP15_2582 0.57 -1.9
2,733,720 - HP15_2582 0.60 -1.1
2,733,728 - HP15_2582 0.62 -1.8
2,733,922 - -1.4
2,733,959 + -4.8
2,734,328 - HP15_2583 0.31 -1.4
2,734,422 + HP15_2583 0.37 -2.2
2,734,525 - HP15_2583 0.43 -1.8
2,734,537 + HP15_2583 0.44 -3.4
2,734,555 + HP15_2583 0.45 -2.0
2,734,837 - HP15_2583 0.64 -2.3

Or see this region's nucleotide sequence