Strain Fitness in Marinobacter adhaerens HP15 around HP15_2366

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2365 and HP15_2366 are separated by 298 nucleotidesHP15_2366 and HP15_2367 overlap by 4 nucleotides HP15_2365: HP15_2365 - protein containing signal transduction response regulator, receiver region domain, at 2,490,147 to 2,491,064 _2365 HP15_2366: HP15_2366 - transcriptional regulator, AraC family protein, at 2,491,363 to 2,492,388 _2366 HP15_2367: HP15_2367 - argininosuccinate synthase, at 2,492,385 to 2,493,611 _2367 Position (kb) 2491 2492 2493Strain fitness (log2 ratio) -3 -2 -1 0 1at 2490.456 kb on - strand, within HP15_2365at 2490.511 kb on - strand, within HP15_2365at 2490.605 kb on + strand, within HP15_2365at 2490.648 kb on + strand, within HP15_2365at 2490.684 kb on - strand, within HP15_2365at 2490.716 kb on - strand, within HP15_2365at 2490.771 kb on + strand, within HP15_2365at 2490.771 kb on + strand, within HP15_2365at 2490.958 kb on - strand, within HP15_2365at 2490.972 kb on + strand, within HP15_2365at 2491.154 kb on + strandat 2491.326 kb on - strandat 2491.476 kb on - strand, within HP15_2366at 2491.508 kb on - strand, within HP15_2366at 2491.605 kb on - strand, within HP15_2366at 2491.624 kb on + strand, within HP15_2366at 2491.634 kb on + strand, within HP15_2366at 2491.669 kb on - strand, within HP15_2366at 2491.833 kb on + strand, within HP15_2366at 2491.979 kb on + strand, within HP15_2366at 2492.027 kb on + strand, within HP15_2366at 2492.041 kb on - strand, within HP15_2366at 2492.178 kb on - strand, within HP15_2366at 2492.291 kb on + strandat 2492.291 kb on + strandat 2492.291 kb on + strandat 2492.299 kb on - strandat 2492.380 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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2,490,456 - HP15_2365 0.34 +0.2
2,490,511 - HP15_2365 0.40 +0.2
2,490,605 + HP15_2365 0.50 +0.0
2,490,648 + HP15_2365 0.55 -0.6
2,490,684 - HP15_2365 0.58 -0.2
2,490,716 - HP15_2365 0.62 +0.1
2,490,771 + HP15_2365 0.68 -0.1
2,490,771 + HP15_2365 0.68 -0.1
2,490,958 - HP15_2365 0.88 -3.0
2,490,972 + HP15_2365 0.90 -1.1
2,491,154 + +0.1
2,491,326 - -0.3
2,491,476 - HP15_2366 0.11 +0.7
2,491,508 - HP15_2366 0.14 +0.2
2,491,605 - HP15_2366 0.24 -0.3
2,491,624 + HP15_2366 0.25 -0.5
2,491,634 + HP15_2366 0.26 -0.5
2,491,669 - HP15_2366 0.30 -0.8
2,491,833 + HP15_2366 0.46 -1.5
2,491,979 + HP15_2366 0.60 -0.3
2,492,027 + HP15_2366 0.65 -0.6
2,492,041 - HP15_2366 0.66 +0.3
2,492,178 - HP15_2366 0.79 +0.1
2,492,291 + -0.3
2,492,291 + -0.3
2,492,291 + -0.8
2,492,299 - +0.2
2,492,380 - -0.5

Or see this region's nucleotide sequence