Experiment: LB 30C timecourse2 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2360 and Psest_2361 overlap by 4 nucleotides Psest_2361 and Psest_2362 overlap by 4 nucleotides Psest_2362 and Psest_2363 overlap by 4 nucleotides Psest_2363 and Psest_2364 overlap by 4 nucleotides
Psest_2360: Psest_2360 - Uncharacterized protein, putative amidase, at 2,514,927 to 2,515,688
_2360
Psest_2361: Psest_2361 - Amidases related to nicotinamidase, at 2,515,685 to 2,516,341
_2361
Psest_2362: Psest_2362 - Zn-dependent hydrolases, including glyoxylases, at 2,516,338 to 2,517,120
_2362
Psest_2363: Psest_2363 - hypothetical protein, at 2,517,117 to 2,517,926
_2363
Psest_2364: Psest_2364 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,517,923 to 2,518,801
_2364
Position (kb)
2516
2517
2518 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2515.548 kb on + strand, within Psest_2360 at 2515.548 kb on + strand, within Psest_2360 at 2515.549 kb on - strand, within Psest_2360 at 2515.549 kb on - strand, within Psest_2360 at 2515.549 kb on - strand, within Psest_2360 at 2515.549 kb on - strand, within Psest_2360 at 2515.549 kb on - strand, within Psest_2360 at 2515.549 kb on - strand, within Psest_2360 at 2515.549 kb on - strand, within Psest_2360 at 2515.549 kb on - strand, within Psest_2360 at 2515.549 kb on - strand, within Psest_2360 at 2515.834 kb on - strand, within Psest_2361 at 2516.387 kb on - strand at 2516.404 kb on - strand at 2516.504 kb on - strand, within Psest_2362 at 2516.639 kb on + strand, within Psest_2362 at 2516.639 kb on + strand, within Psest_2362 at 2516.639 kb on + strand, within Psest_2362 at 2516.639 kb on + strand, within Psest_2362 at 2516.639 kb on + strand, within Psest_2362 at 2516.639 kb on + strand, within Psest_2362 at 2516.639 kb on + strand, within Psest_2362 at 2516.639 kb on + strand, within Psest_2362 at 2516.639 kb on + strand, within Psest_2362 at 2516.639 kb on + strand, within Psest_2362 at 2516.639 kb on + strand, within Psest_2362 at 2516.639 kb on + strand, within Psest_2362 at 2516.639 kb on + strand, within Psest_2362 at 2516.639 kb on + strand, within Psest_2362 at 2516.639 kb on + strand, within Psest_2362 at 2516.640 kb on - strand, within Psest_2362 at 2516.640 kb on - strand, within Psest_2362 at 2516.640 kb on - strand, within Psest_2362 at 2516.640 kb on - strand, within Psest_2362 at 2516.640 kb on - strand, within Psest_2362 at 2516.640 kb on - strand, within Psest_2362 at 2516.640 kb on - strand, within Psest_2362 at 2516.717 kb on + strand, within Psest_2362 at 2516.717 kb on + strand, within Psest_2362 at 2516.717 kb on + strand, within Psest_2362 at 2516.717 kb on + strand, within Psest_2362 at 2516.718 kb on - strand, within Psest_2362 at 2516.718 kb on - strand, within Psest_2362 at 2516.718 kb on - strand, within Psest_2362 at 2516.718 kb on - strand, within Psest_2362 at 2516.764 kb on + strand, within Psest_2362 at 2516.765 kb on - strand, within Psest_2362 at 2517.109 kb on + strand at 2517.139 kb on - strand at 2517.208 kb on - strand, within Psest_2363 at 2517.208 kb on - strand, within Psest_2363 at 2517.208 kb on - strand, within Psest_2363 at 2517.208 kb on - strand, within Psest_2363 at 2517.362 kb on + strand, within Psest_2363 at 2517.362 kb on + strand, within Psest_2363 at 2517.363 kb on - strand, within Psest_2363 at 2517.363 kb on - strand, within Psest_2363 at 2517.363 kb on - strand, within Psest_2363 at 2517.477 kb on + strand, within Psest_2363 at 2517.478 kb on - strand, within Psest_2363 at 2517.588 kb on + strand, within Psest_2363 at 2517.588 kb on + strand, within Psest_2363 at 2517.588 kb on + strand, within Psest_2363 at 2517.589 kb on - strand, within Psest_2363 at 2517.656 kb on - strand, within Psest_2363 at 2517.656 kb on - strand, within Psest_2363 at 2517.796 kb on - strand, within Psest_2363 at 2517.905 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 1 remove 2,515,548 + Psest_2360 0.81 +2.4 2,515,548 + Psest_2360 0.81 -0.2 2,515,549 - Psest_2360 0.82 +1.4 2,515,549 - Psest_2360 0.82 +1.2 2,515,549 - Psest_2360 0.82 -1.6 2,515,549 - Psest_2360 0.82 -0.2 2,515,549 - Psest_2360 0.82 +1.4 2,515,549 - Psest_2360 0.82 +1.4 2,515,549 - Psest_2360 0.82 +0.4 2,515,549 - Psest_2360 0.82 +1.4 2,515,549 - Psest_2360 0.82 +2.7 2,515,834 - Psest_2361 0.23 +1.4 2,516,387 - +2.0 2,516,404 - +0.4 2,516,504 - Psest_2362 0.21 +0.4 2,516,639 + Psest_2362 0.38 -0.2 2,516,639 + Psest_2362 0.38 +1.4 2,516,639 + Psest_2362 0.38 -0.6 2,516,639 + Psest_2362 0.38 +0.4 2,516,639 + Psest_2362 0.38 +1.1 2,516,639 + Psest_2362 0.38 +2.4 2,516,639 + Psest_2362 0.38 -0.6 2,516,639 + Psest_2362 0.38 +0.3 2,516,639 + Psest_2362 0.38 +0.2 2,516,639 + Psest_2362 0.38 -1.1 2,516,639 + Psest_2362 0.38 +1.4 2,516,639 + Psest_2362 0.38 -0.5 2,516,639 + Psest_2362 0.38 -1.2 2,516,639 + Psest_2362 0.38 +1.0 2,516,639 + Psest_2362 0.38 +0.4 2,516,640 - Psest_2362 0.39 +1.4 2,516,640 - Psest_2362 0.39 -0.2 2,516,640 - Psest_2362 0.39 -0.2 2,516,640 - Psest_2362 0.39 +0.9 2,516,640 - Psest_2362 0.39 +2.4 2,516,640 - Psest_2362 0.39 +1.4 2,516,640 - Psest_2362 0.39 +0.4 2,516,717 + Psest_2362 0.48 -0.9 2,516,717 + Psest_2362 0.48 -0.2 2,516,717 + Psest_2362 0.48 -0.6 2,516,717 + Psest_2362 0.48 +0.9 2,516,718 - Psest_2362 0.49 +1.0 2,516,718 - Psest_2362 0.49 +2.0 2,516,718 - Psest_2362 0.49 +0.4 2,516,718 - Psest_2362 0.49 -0.3 2,516,764 + Psest_2362 0.54 -0.6 2,516,765 - Psest_2362 0.55 -0.9 2,517,109 + +1.1 2,517,139 - -1.2 2,517,208 - Psest_2363 0.11 -0.9 2,517,208 - Psest_2363 0.11 -0.6 2,517,208 - Psest_2363 0.11 -0.9 2,517,208 - Psest_2363 0.11 +1.1 2,517,362 + Psest_2363 0.30 +0.1 2,517,362 + Psest_2363 0.30 -0.2 2,517,363 - Psest_2363 0.30 +1.7 2,517,363 - Psest_2363 0.30 +3.0 2,517,363 - Psest_2363 0.30 -0.2 2,517,477 + Psest_2363 0.44 -0.9 2,517,478 - Psest_2363 0.45 +1.7 2,517,588 + Psest_2363 0.58 +0.0 2,517,588 + Psest_2363 0.58 +0.6 2,517,588 + Psest_2363 0.58 -0.6 2,517,589 - Psest_2363 0.58 +1.4 2,517,656 - Psest_2363 0.67 +3.4 2,517,656 - Psest_2363 0.67 -0.0 2,517,796 - Psest_2363 0.84 -1.2 2,517,905 + +0.8
Or see this region's nucleotide sequence