Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01300 and PGA1_c01310 are separated by 127 nucleotides PGA1_c01310 and PGA1_c01320 are separated by 261 nucleotides
PGA1_c01300: PGA1_c01300 - DNA topoisomerase 4 subunit A, at 120,748 to 123,096
_c01300
PGA1_c01310: PGA1_c01310 - hypothetical protein, at 123,224 to 123,835
_c01310
PGA1_c01320: PGA1_c01320 - elongation factor Tu, at 124,097 to 125,272
_c01320
Position (kb) 123
124 Strain fitness (log2 ratio) -1
0
1 at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.138 kb on + strand at 123.745 kb on + strand, within PGA1_c01310 at 123.761 kb on + strand, within PGA1_c01310 at 123.764 kb on - strand, within PGA1_c01310 at 123.766 kb on + strand, within PGA1_c01310 at 123.766 kb on + strand, within PGA1_c01310 at 123.769 kb on - strand, within PGA1_c01310 at 123.771 kb on + strand, within PGA1_c01310 at 123.774 kb on - strand at 123.779 kb on - strand at 123.877 kb on - strand at 123.930 kb on + strand at 123.930 kb on + strand at 123.970 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 123,118 + -0.2 123,118 + +0.2 123,118 + -0.1 123,118 + -0.4 123,118 + -0.6 123,118 + -0.1 123,118 + -0.0 123,118 + -0.1 123,118 + -0.2 123,118 + +0.5 123,118 + -0.2 123,118 + +0.5 123,126 - -1.4 123,126 - +0.4 123,126 - +0.4 123,126 - +0.4 123,126 - -0.1 123,126 - +0.4 123,126 - +0.2 123,126 - +0.5 123,126 - +0.6 123,126 - +0.6 123,126 - -0.2 123,138 + +1.3 123,745 + PGA1_c01310 0.85 +0.4 123,761 + PGA1_c01310 0.88 +0.8 123,764 - PGA1_c01310 0.88 -1.3 123,766 + PGA1_c01310 0.89 -1.3 123,766 + PGA1_c01310 0.89 -0.8 123,769 - PGA1_c01310 0.89 -1.2 123,771 + PGA1_c01310 0.89 -1.0 123,774 - +0.9 123,779 - -1.4 123,877 - -0.2 123,930 + -0.1 123,930 + -1.0 123,970 + +0.4
Or see this region's nucleotide sequence