Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c11900

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c11890 and PGA1_c11900 are separated by 144 nucleotidesPGA1_c11900 and PGA1_c11910 are separated by 299 nucleotides PGA1_c11890: PGA1_c11890 - putative indoleacetamide hydrolase, at 1,232,090 to 1,233,532 _c11890 PGA1_c11900: PGA1_c11900 - Propionate--CoA ligase (EC 6.2.1.17) (from data), at 1,233,677 to 1,235,566 _c11900 PGA1_c11910: PGA1_c11910 - Malate dehydrogenase (decarboxylating) (EC 1.1.1.39) (from data), at 1,235,866 to 1,238,154 _c11910 Position (kb) 1233 1234 1235 1236Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1232.707 kb on + strand, within PGA1_c11890at 1232.707 kb on + strand, within PGA1_c11890at 1232.707 kb on + strand, within PGA1_c11890at 1232.715 kb on - strand, within PGA1_c11890at 1232.715 kb on - strand, within PGA1_c11890at 1232.715 kb on - strand, within PGA1_c11890at 1232.744 kb on + strand, within PGA1_c11890at 1232.798 kb on + strand, within PGA1_c11890at 1232.806 kb on - strand, within PGA1_c11890at 1232.858 kb on - strand, within PGA1_c11890at 1232.858 kb on - strand, within PGA1_c11890at 1232.864 kb on + strand, within PGA1_c11890at 1232.864 kb on + strand, within PGA1_c11890at 1232.872 kb on - strand, within PGA1_c11890at 1232.874 kb on + strand, within PGA1_c11890at 1232.874 kb on + strand, within PGA1_c11890at 1232.882 kb on - strand, within PGA1_c11890at 1232.882 kb on - strand, within PGA1_c11890at 1232.882 kb on - strand, within PGA1_c11890at 1232.925 kb on - strand, within PGA1_c11890at 1232.941 kb on + strand, within PGA1_c11890at 1233.013 kb on + strand, within PGA1_c11890at 1233.035 kb on + strand, within PGA1_c11890at 1233.055 kb on + strand, within PGA1_c11890at 1233.063 kb on - strand, within PGA1_c11890at 1233.102 kb on - strand, within PGA1_c11890at 1233.247 kb on + strand, within PGA1_c11890at 1233.321 kb on - strand, within PGA1_c11890at 1233.365 kb on + strand, within PGA1_c11890at 1233.373 kb on - strand, within PGA1_c11890at 1233.434 kb on + strandat 1233.442 kb on - strandat 1233.467 kb on - strandat 1233.477 kb on + strandat 1233.485 kb on - strandat 1233.526 kb on + strandat 1233.526 kb on + strandat 1233.534 kb on - strandat 1233.559 kb on + strandat 1233.618 kb on - strandat 1233.689 kb on + strandat 1233.845 kb on - strandat 1233.847 kb on + strandat 1233.893 kb on - strand, within PGA1_c11900at 1233.921 kb on - strand, within PGA1_c11900at 1233.967 kb on + strand, within PGA1_c11900at 1233.967 kb on + strand, within PGA1_c11900at 1233.967 kb on + strand, within PGA1_c11900at 1233.967 kb on - strand, within PGA1_c11900at 1234.009 kb on + strand, within PGA1_c11900at 1234.018 kb on - strand, within PGA1_c11900at 1234.054 kb on + strand, within PGA1_c11900at 1234.078 kb on + strand, within PGA1_c11900at 1234.081 kb on + strand, within PGA1_c11900at 1234.152 kb on - strand, within PGA1_c11900at 1234.187 kb on + strand, within PGA1_c11900at 1234.430 kb on - strand, within PGA1_c11900at 1234.454 kb on + strand, within PGA1_c11900at 1234.462 kb on - strand, within PGA1_c11900at 1234.497 kb on - strand, within PGA1_c11900at 1234.551 kb on + strand, within PGA1_c11900at 1234.570 kb on - strand, within PGA1_c11900at 1234.700 kb on + strand, within PGA1_c11900at 1234.708 kb on - strand, within PGA1_c11900at 1234.734 kb on + strand, within PGA1_c11900at 1234.734 kb on + strand, within PGA1_c11900at 1234.734 kb on + strand, within PGA1_c11900at 1234.734 kb on + strand, within PGA1_c11900at 1234.734 kb on + strand, within PGA1_c11900at 1234.734 kb on + strand, within PGA1_c11900at 1234.734 kb on + strand, within PGA1_c11900at 1234.742 kb on - strand, within PGA1_c11900at 1234.769 kb on - strand, within PGA1_c11900at 1234.799 kb on - strand, within PGA1_c11900at 1234.824 kb on + strand, within PGA1_c11900at 1234.824 kb on + strand, within PGA1_c11900at 1234.824 kb on + strand, within PGA1_c11900at 1234.824 kb on + strand, within PGA1_c11900at 1234.824 kb on + strand, within PGA1_c11900at 1234.824 kb on + strand, within PGA1_c11900at 1234.824 kb on + strand, within PGA1_c11900at 1234.824 kb on + strand, within PGA1_c11900at 1234.824 kb on + strand, within PGA1_c11900at 1234.824 kb on + strand, within PGA1_c11900at 1234.825 kb on - strand, within PGA1_c11900at 1234.832 kb on - strand, within PGA1_c11900at 1234.832 kb on - strand, within PGA1_c11900at 1234.832 kb on - strand, within PGA1_c11900at 1234.832 kb on - strand, within PGA1_c11900at 1234.832 kb on - strand, within PGA1_c11900at 1234.859 kb on - strand, within PGA1_c11900at 1234.888 kb on + strand, within PGA1_c11900at 1234.888 kb on + strand, within PGA1_c11900at 1234.901 kb on - strand, within PGA1_c11900at 1234.901 kb on - strand, within PGA1_c11900at 1234.903 kb on + strand, within PGA1_c11900at 1234.911 kb on - strand, within PGA1_c11900at 1234.991 kb on + strand, within PGA1_c11900at 1235.070 kb on - strand, within PGA1_c11900at 1235.100 kb on - strand, within PGA1_c11900at 1235.105 kb on - strand, within PGA1_c11900at 1235.149 kb on + strand, within PGA1_c11900at 1235.159 kb on + strand, within PGA1_c11900at 1235.166 kb on + strand, within PGA1_c11900at 1235.167 kb on - strand, within PGA1_c11900at 1235.174 kb on - strand, within PGA1_c11900at 1235.202 kb on - strand, within PGA1_c11900at 1235.254 kb on - strand, within PGA1_c11900at 1235.299 kb on + strand, within PGA1_c11900at 1235.323 kb on + strand, within PGA1_c11900at 1235.409 kb on + strandat 1235.451 kb on - strandat 1235.511 kb on + strandat 1235.618 kb on - strandat 1235.787 kb on - strandat 1235.878 kb on + strandat 1235.878 kb on + strandat 1235.886 kb on - strandat 1235.949 kb on - strandat 1235.985 kb on + strandat 1235.993 kb on - strandat 1235.993 kb on - strandat 1236.071 kb on + strandat 1236.071 kb on + strandat 1236.079 kb on - strandat 1236.116 kb on - strand, within PGA1_c11910at 1236.116 kb on - strand, within PGA1_c11910at 1236.125 kb on + strand, within PGA1_c11910at 1236.144 kb on - strand, within PGA1_c11910at 1236.149 kb on - strand, within PGA1_c11910at 1236.179 kb on - strand, within PGA1_c11910at 1236.179 kb on - strand, within PGA1_c11910at 1236.220 kb on + strand, within PGA1_c11910at 1236.269 kb on - strand, within PGA1_c11910at 1236.326 kb on - strand, within PGA1_c11910at 1236.329 kb on + strand, within PGA1_c11910at 1236.342 kb on + strand, within PGA1_c11910at 1236.353 kb on + strand, within PGA1_c11910at 1236.368 kb on - strand, within PGA1_c11910at 1236.405 kb on + strand, within PGA1_c11910at 1236.413 kb on - strand, within PGA1_c11910at 1236.442 kb on + strand, within PGA1_c11910at 1236.538 kb on - strand, within PGA1_c11910at 1236.538 kb on - strand, within PGA1_c11910at 1236.548 kb on + strand, within PGA1_c11910

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,232,707 + PGA1_c11890 0.43 +0.4
1,232,707 + PGA1_c11890 0.43 +0.6
1,232,707 + PGA1_c11890 0.43 +0.7
1,232,715 - PGA1_c11890 0.43 +0.1
1,232,715 - PGA1_c11890 0.43 -0.0
1,232,715 - PGA1_c11890 0.43 -0.1
1,232,744 + PGA1_c11890 0.45 -1.5
1,232,798 + PGA1_c11890 0.49 -0.7
1,232,806 - PGA1_c11890 0.50 -0.2
1,232,858 - PGA1_c11890 0.53 +0.4
1,232,858 - PGA1_c11890 0.53 -0.8
1,232,864 + PGA1_c11890 0.54 -0.2
1,232,864 + PGA1_c11890 0.54 +0.2
1,232,872 - PGA1_c11890 0.54 +0.1
1,232,874 + PGA1_c11890 0.54 -1.2
1,232,874 + PGA1_c11890 0.54 +0.2
1,232,882 - PGA1_c11890 0.55 +0.5
1,232,882 - PGA1_c11890 0.55 +0.8
1,232,882 - PGA1_c11890 0.55 +0.8
1,232,925 - PGA1_c11890 0.58 +0.5
1,232,941 + PGA1_c11890 0.59 +0.2
1,233,013 + PGA1_c11890 0.64 -0.3
1,233,035 + PGA1_c11890 0.65 +1.0
1,233,055 + PGA1_c11890 0.67 -0.1
1,233,063 - PGA1_c11890 0.67 +0.1
1,233,102 - PGA1_c11890 0.70 -2.0
1,233,247 + PGA1_c11890 0.80 -0.4
1,233,321 - PGA1_c11890 0.85 +0.0
1,233,365 + PGA1_c11890 0.88 +0.3
1,233,373 - PGA1_c11890 0.89 -0.2
1,233,434 + +0.1
1,233,442 - +0.0
1,233,467 - -0.9
1,233,477 + -0.3
1,233,485 - +0.1
1,233,526 + -0.3
1,233,526 + -0.3
1,233,534 - -0.5
1,233,559 + +0.4
1,233,618 - -0.0
1,233,689 + -0.8
1,233,845 - -2.5
1,233,847 + -1.9
1,233,893 - PGA1_c11900 0.11 -1.1
1,233,921 - PGA1_c11900 0.13 -1.9
1,233,967 + PGA1_c11900 0.15 -1.3
1,233,967 + PGA1_c11900 0.15 -1.9
1,233,967 + PGA1_c11900 0.15 -2.2
1,233,967 - PGA1_c11900 0.15 -2.3
1,234,009 + PGA1_c11900 0.18 -2.8
1,234,018 - PGA1_c11900 0.18 -2.6
1,234,054 + PGA1_c11900 0.20 -4.2
1,234,078 + PGA1_c11900 0.21 -1.6
1,234,081 + PGA1_c11900 0.21 -0.3
1,234,152 - PGA1_c11900 0.25 -1.9
1,234,187 + PGA1_c11900 0.27 -1.8
1,234,430 - PGA1_c11900 0.40 -2.7
1,234,454 + PGA1_c11900 0.41 -2.1
1,234,462 - PGA1_c11900 0.42 -2.5
1,234,497 - PGA1_c11900 0.43 -2.2
1,234,551 + PGA1_c11900 0.46 -1.8
1,234,570 - PGA1_c11900 0.47 -2.6
1,234,700 + PGA1_c11900 0.54 -0.8
1,234,708 - PGA1_c11900 0.55 -2.7
1,234,734 + PGA1_c11900 0.56 -2.2
1,234,734 + PGA1_c11900 0.56 -1.3
1,234,734 + PGA1_c11900 0.56 -0.3
1,234,734 + PGA1_c11900 0.56 -1.8
1,234,734 + PGA1_c11900 0.56 -0.1
1,234,734 + PGA1_c11900 0.56 -2.7
1,234,734 + PGA1_c11900 0.56 -1.2
1,234,742 - PGA1_c11900 0.56 -3.1
1,234,769 - PGA1_c11900 0.58 -1.3
1,234,799 - PGA1_c11900 0.59 -0.8
1,234,824 + PGA1_c11900 0.61 -0.0
1,234,824 + PGA1_c11900 0.61 -2.8
1,234,824 + PGA1_c11900 0.61 -3.4
1,234,824 + PGA1_c11900 0.61 -1.0
1,234,824 + PGA1_c11900 0.61 -2.0
1,234,824 + PGA1_c11900 0.61 -1.1
1,234,824 + PGA1_c11900 0.61 -1.8
1,234,824 + PGA1_c11900 0.61 -1.1
1,234,824 + PGA1_c11900 0.61 -2.2
1,234,824 + PGA1_c11900 0.61 -1.3
1,234,825 - PGA1_c11900 0.61 -1.4
1,234,832 - PGA1_c11900 0.61 -1.6
1,234,832 - PGA1_c11900 0.61 -1.7
1,234,832 - PGA1_c11900 0.61 -1.5
1,234,832 - PGA1_c11900 0.61 -2.4
1,234,832 - PGA1_c11900 0.61 -2.2
1,234,859 - PGA1_c11900 0.63 -1.8
1,234,888 + PGA1_c11900 0.64 -0.9
1,234,888 + PGA1_c11900 0.64 +0.0
1,234,901 - PGA1_c11900 0.65 -0.4
1,234,901 - PGA1_c11900 0.65 -0.6
1,234,903 + PGA1_c11900 0.65 -0.9
1,234,911 - PGA1_c11900 0.65 -0.8
1,234,991 + PGA1_c11900 0.70 -1.9
1,235,070 - PGA1_c11900 0.74 -1.8
1,235,100 - PGA1_c11900 0.75 -1.7
1,235,105 - PGA1_c11900 0.76 -1.2
1,235,149 + PGA1_c11900 0.78 -1.7
1,235,159 + PGA1_c11900 0.78 -1.2
1,235,166 + PGA1_c11900 0.79 -3.8
1,235,167 - PGA1_c11900 0.79 -1.0
1,235,174 - PGA1_c11900 0.79 -1.4
1,235,202 - PGA1_c11900 0.81 -2.6
1,235,254 - PGA1_c11900 0.83 -1.8
1,235,299 + PGA1_c11900 0.86 -1.1
1,235,323 + PGA1_c11900 0.87 -2.0
1,235,409 + -0.3
1,235,451 - -1.6
1,235,511 + -1.5
1,235,618 - -3.7
1,235,787 - -0.4
1,235,878 + -1.6
1,235,878 + -2.0
1,235,886 - -0.9
1,235,949 - -3.0
1,235,985 + -3.0
1,235,993 - -1.2
1,235,993 - -1.1
1,236,071 + -2.7
1,236,071 + -4.4
1,236,079 - -2.4
1,236,116 - PGA1_c11910 0.11 -0.9
1,236,116 - PGA1_c11910 0.11 -1.8
1,236,125 + PGA1_c11910 0.11 -1.5
1,236,144 - PGA1_c11910 0.12 -1.4
1,236,149 - PGA1_c11910 0.12 -1.5
1,236,179 - PGA1_c11910 0.14 -2.2
1,236,179 - PGA1_c11910 0.14 -1.3
1,236,220 + PGA1_c11910 0.15 +0.0
1,236,269 - PGA1_c11910 0.18 -2.3
1,236,326 - PGA1_c11910 0.20 -1.8
1,236,329 + PGA1_c11910 0.20 -1.5
1,236,342 + PGA1_c11910 0.21 -2.0
1,236,353 + PGA1_c11910 0.21 -2.7
1,236,368 - PGA1_c11910 0.22 -1.8
1,236,405 + PGA1_c11910 0.24 -2.0
1,236,413 - PGA1_c11910 0.24 -1.1
1,236,442 + PGA1_c11910 0.25 -3.0
1,236,538 - PGA1_c11910 0.29 -0.3
1,236,538 - PGA1_c11910 0.29 -2.5
1,236,548 + PGA1_c11910 0.30 -3.5

Or see this region's nucleotide sequence