Strain Fitness in Shewanella amazonensis SB2B around Sama_0450

Experiment: Minimal media, 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0449 and Sama_0450 are separated by 170 nucleotidesSama_0450 and Sama_0451 overlap by 4 nucleotidesSama_0451 and Sama_0452 overlap by 4 nucleotides Sama_0449: Sama_0449 - regulatory protein CsrD (RefSeq), at 554,989 to 556,896 _0449 Sama_0450: Sama_0450 - biogenesis protein MshI (RefSeq), at 557,067 to 557,936 _0450 Sama_0451: Sama_0451 - hypothetical protein (RefSeq), at 557,933 to 558,535 _0451 Sama_0452: Sama_0452 - MSHA biogenesis protein MshJ (RefSeq), at 558,532 to 559,185 _0452 Position (kb) 557 558Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 556.128 kb on + strand, within Sama_0449at 556.128 kb on + strand, within Sama_0449at 556.129 kb on - strand, within Sama_0449at 556.129 kb on - strand, within Sama_0449at 556.129 kb on - strand, within Sama_0449at 556.129 kb on - strand, within Sama_0449at 556.132 kb on + strand, within Sama_0449at 556.132 kb on + strand, within Sama_0449at 556.132 kb on + strand, within Sama_0449at 556.132 kb on + strand, within Sama_0449at 556.133 kb on - strand, within Sama_0449at 556.133 kb on - strand, within Sama_0449at 556.133 kb on - strand, within Sama_0449at 556.133 kb on - strand, within Sama_0449at 556.133 kb on - strand, within Sama_0449at 556.175 kb on + strand, within Sama_0449at 556.176 kb on - strand, within Sama_0449at 556.224 kb on + strand, within Sama_0449at 556.225 kb on - strand, within Sama_0449at 556.242 kb on + strand, within Sama_0449at 556.409 kb on - strand, within Sama_0449at 556.435 kb on + strand, within Sama_0449at 556.435 kb on + strand, within Sama_0449at 556.435 kb on + strand, within Sama_0449at 556.435 kb on + strand, within Sama_0449at 556.435 kb on + strand, within Sama_0449at 556.435 kb on + strand, within Sama_0449at 556.436 kb on - strand, within Sama_0449at 556.465 kb on - strand, within Sama_0449at 556.510 kb on + strand, within Sama_0449at 556.510 kb on + strand, within Sama_0449at 556.554 kb on + strand, within Sama_0449at 556.554 kb on + strand, within Sama_0449at 556.593 kb on + strand, within Sama_0449at 556.593 kb on + strand, within Sama_0449at 556.593 kb on + strand, within Sama_0449at 556.594 kb on - strand, within Sama_0449at 556.594 kb on - strand, within Sama_0449at 556.596 kb on + strand, within Sama_0449at 556.596 kb on + strand, within Sama_0449at 556.596 kb on + strand, within Sama_0449at 556.596 kb on + strand, within Sama_0449at 556.597 kb on - strand, within Sama_0449at 556.597 kb on - strand, within Sama_0449at 556.597 kb on - strand, within Sama_0449at 556.597 kb on - strand, within Sama_0449at 556.597 kb on - strand, within Sama_0449at 556.605 kb on + strand, within Sama_0449at 556.605 kb on + strand, within Sama_0449at 556.605 kb on + strand, within Sama_0449at 556.606 kb on - strand, within Sama_0449at 556.606 kb on - strand, within Sama_0449at 556.620 kb on + strand, within Sama_0449at 556.620 kb on + strand, within Sama_0449at 556.649 kb on + strand, within Sama_0449at 556.650 kb on - strand, within Sama_0449at 556.663 kb on + strand, within Sama_0449at 556.663 kb on + strand, within Sama_0449at 556.663 kb on + strand, within Sama_0449at 556.664 kb on - strand, within Sama_0449at 556.664 kb on - strand, within Sama_0449at 556.664 kb on - strand, within Sama_0449at 556.664 kb on - strand, within Sama_0449at 556.664 kb on - strand, within Sama_0449at 556.664 kb on - strand, within Sama_0449at 556.665 kb on + strand, within Sama_0449at 556.665 kb on + strand, within Sama_0449at 556.665 kb on + strand, within Sama_0449at 556.683 kb on + strand, within Sama_0449at 556.684 kb on - strand, within Sama_0449at 556.689 kb on + strand, within Sama_0449at 556.689 kb on + strand, within Sama_0449at 556.721 kb on + strandat 556.727 kb on + strandat 556.727 kb on + strandat 556.728 kb on - strandat 556.728 kb on - strandat 556.728 kb on - strandat 556.728 kb on - strandat 556.760 kb on + strandat 556.788 kb on - strandat 556.788 kb on - strandat 556.788 kb on - strandat 556.788 kb on - strandat 556.788 kb on - strandat 556.788 kb on - strandat 556.870 kb on + strandat 556.870 kb on + strandat 556.870 kb on + strandat 556.870 kb on + strandat 556.871 kb on - strandat 556.947 kb on + strandat 556.955 kb on - strandat 556.957 kb on + strandat 556.957 kb on + strandat 556.957 kb on + strandat 556.957 kb on + strandat 556.958 kb on - strandat 556.968 kb on + strandat 556.968 kb on + strandat 556.968 kb on + strandat 556.968 kb on + strandat 556.968 kb on + strandat 556.969 kb on - strandat 556.969 kb on - strandat 556.972 kb on + strandat 556.981 kb on + strandat 556.985 kb on + strandat 556.989 kb on + strandat 556.989 kb on + strandat 556.989 kb on + strandat 556.989 kb on + strandat 556.990 kb on - strandat 556.990 kb on - strandat 556.990 kb on - strandat 556.990 kb on - strandat 556.993 kb on - strandat 557.038 kb on + strandat 557.039 kb on - strandat 557.039 kb on - strandat 557.055 kb on - strandat 557.130 kb on + strandat 557.130 kb on + strandat 557.130 kb on + strandat 557.130 kb on + strandat 557.130 kb on + strandat 557.131 kb on - strandat 557.131 kb on - strandat 557.236 kb on + strand, within Sama_0450at 557.236 kb on + strand, within Sama_0450at 557.237 kb on - strand, within Sama_0450at 557.272 kb on + strand, within Sama_0450at 557.272 kb on + strand, within Sama_0450at 557.273 kb on - strand, within Sama_0450at 557.273 kb on - strand, within Sama_0450at 557.290 kb on - strand, within Sama_0450at 557.360 kb on + strand, within Sama_0450at 557.360 kb on + strand, within Sama_0450at 557.360 kb on + strand, within Sama_0450at 557.360 kb on + strand, within Sama_0450at 557.361 kb on - strand, within Sama_0450at 557.361 kb on - strand, within Sama_0450at 557.361 kb on - strand, within Sama_0450at 557.403 kb on + strand, within Sama_0450at 557.403 kb on + strand, within Sama_0450at 557.421 kb on - strand, within Sama_0450at 557.437 kb on + strand, within Sama_0450at 557.437 kb on + strand, within Sama_0450at 557.509 kb on + strand, within Sama_0450at 557.509 kb on + strand, within Sama_0450at 557.510 kb on - strand, within Sama_0450at 557.523 kb on - strand, within Sama_0450at 557.523 kb on - strand, within Sama_0450at 557.581 kb on + strand, within Sama_0450at 557.582 kb on - strand, within Sama_0450at 557.582 kb on - strand, within Sama_0450at 557.605 kb on + strand, within Sama_0450at 557.605 kb on + strand, within Sama_0450at 557.605 kb on + strand, within Sama_0450at 557.606 kb on - strand, within Sama_0450at 557.606 kb on - strand, within Sama_0450at 557.681 kb on - strand, within Sama_0450at 557.700 kb on + strand, within Sama_0450at 557.700 kb on + strand, within Sama_0450at 557.748 kb on + strand, within Sama_0450at 557.748 kb on + strand, within Sama_0450at 557.748 kb on + strand, within Sama_0450at 557.748 kb on + strand, within Sama_0450at 557.749 kb on - strand, within Sama_0450at 557.788 kb on + strand, within Sama_0450at 557.788 kb on + strand, within Sama_0450at 557.788 kb on + strand, within Sama_0450at 557.788 kb on + strand, within Sama_0450at 557.788 kb on + strand, within Sama_0450at 557.788 kb on + strand, within Sama_0450at 557.788 kb on + strand, within Sama_0450at 557.789 kb on - strand, within Sama_0450at 557.789 kb on - strand, within Sama_0450at 557.789 kb on - strand, within Sama_0450at 557.789 kb on - strand, within Sama_0450at 557.789 kb on - strand, within Sama_0450at 557.870 kb on + strandat 557.871 kb on - strandat 557.955 kb on + strandat 557.955 kb on + strandat 557.955 kb on + strandat 557.956 kb on - strandat 557.956 kb on - strandat 558.037 kb on - strand, within Sama_0451at 558.082 kb on - strand, within Sama_0451at 558.094 kb on + strand, within Sama_0451at 558.094 kb on + strand, within Sama_0451at 558.094 kb on + strand, within Sama_0451at 558.094 kb on + strand, within Sama_0451at 558.094 kb on + strand, within Sama_0451at 558.094 kb on + strand, within Sama_0451at 558.095 kb on - strand, within Sama_0451at 558.095 kb on - strand, within Sama_0451at 558.095 kb on - strand, within Sama_0451at 558.095 kb on - strand, within Sama_0451at 558.095 kb on - strand, within Sama_0451at 558.095 kb on - strand, within Sama_0451at 558.098 kb on - strand, within Sama_0451at 558.278 kb on + strand, within Sama_0451at 558.278 kb on + strand, within Sama_0451at 558.289 kb on + strand, within Sama_0451at 558.289 kb on + strand, within Sama_0451at 558.289 kb on + strand, within Sama_0451at 558.290 kb on - strand, within Sama_0451at 558.290 kb on - strand, within Sama_0451at 558.290 kb on - strand, within Sama_0451at 558.290 kb on - strand, within Sama_0451at 558.418 kb on + strand, within Sama_0451at 558.418 kb on + strand, within Sama_0451at 558.418 kb on + strand, within Sama_0451at 558.418 kb on + strand, within Sama_0451at 558.419 kb on - strand, within Sama_0451at 558.481 kb on + strandat 558.497 kb on - strandat 558.497 kb on - strandat 558.497 kb on - strandat 558.578 kb on + strandat 558.578 kb on + strandat 558.578 kb on + strandat 558.578 kb on + strandat 558.578 kb on + strandat 558.578 kb on + strandat 558.578 kb on + strandat 558.579 kb on - strandat 558.594 kb on + strandat 558.624 kb on + strand, within Sama_0452at 558.624 kb on + strand, within Sama_0452at 558.624 kb on + strand, within Sama_0452at 558.624 kb on + strand, within Sama_0452at 558.624 kb on + strand, within Sama_0452at 558.624 kb on + strand, within Sama_0452at 558.624 kb on + strand, within Sama_0452at 558.624 kb on + strand, within Sama_0452at 558.624 kb on + strand, within Sama_0452at 558.624 kb on + strand, within Sama_0452at 558.624 kb on + strand, within Sama_0452at 558.625 kb on - strand, within Sama_0452at 558.625 kb on - strand, within Sama_0452at 558.625 kb on - strand, within Sama_0452at 558.625 kb on - strand, within Sama_0452at 558.625 kb on - strand, within Sama_0452at 558.625 kb on - strand, within Sama_0452at 558.625 kb on - strand, within Sama_0452at 558.625 kb on - strand, within Sama_0452at 558.665 kb on - strand, within Sama_0452at 558.687 kb on - strand, within Sama_0452at 558.728 kb on + strand, within Sama_0452at 558.728 kb on + strand, within Sama_0452at 558.728 kb on + strand, within Sama_0452at 558.728 kb on + strand, within Sama_0452at 558.728 kb on + strand, within Sama_0452at 558.728 kb on + strand, within Sama_0452at 558.728 kb on + strand, within Sama_0452at 558.729 kb on - strand, within Sama_0452at 558.729 kb on - strand, within Sama_0452at 558.729 kb on - strand, within Sama_0452at 558.729 kb on - strand, within Sama_0452at 558.729 kb on - strand, within Sama_0452at 558.736 kb on + strand, within Sama_0452at 558.737 kb on - strand, within Sama_0452at 558.737 kb on - strand, within Sama_0452at 558.846 kb on + strand, within Sama_0452at 558.847 kb on - strand, within Sama_0452

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media, 20C
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556,128 + Sama_0449 0.60 +0.6
556,128 + Sama_0449 0.60 +1.6
556,129 - Sama_0449 0.60 +0.2
556,129 - Sama_0449 0.60 -1.8
556,129 - Sama_0449 0.60 -2.6
556,129 - Sama_0449 0.60 -0.3
556,132 + Sama_0449 0.60 +0.5
556,132 + Sama_0449 0.60 -1.4
556,132 + Sama_0449 0.60 +0.5
556,132 + Sama_0449 0.60 +0.2
556,133 - Sama_0449 0.60 +1.0
556,133 - Sama_0449 0.60 +1.0
556,133 - Sama_0449 0.60 -0.6
556,133 - Sama_0449 0.60 -0.5
556,133 - Sama_0449 0.60 -1.1
556,175 + Sama_0449 0.62 +0.2
556,176 - Sama_0449 0.62 -1.0
556,224 + Sama_0449 0.65 -1.1
556,225 - Sama_0449 0.65 -0.5
556,242 + Sama_0449 0.66 +1.4
556,409 - Sama_0449 0.74 +0.2
556,435 + Sama_0449 0.76 +0.6
556,435 + Sama_0449 0.76 -1.6
556,435 + Sama_0449 0.76 -0.7
556,435 + Sama_0449 0.76 -0.1
556,435 + Sama_0449 0.76 -1.6
556,435 + Sama_0449 0.76 -0.2
556,436 - Sama_0449 0.76 -0.7
556,465 - Sama_0449 0.77 -0.3
556,510 + Sama_0449 0.80 +0.0
556,510 + Sama_0449 0.80 -0.5
556,554 + Sama_0449 0.82 -1.3
556,554 + Sama_0449 0.82 -0.1
556,593 + Sama_0449 0.84 -2.1
556,593 + Sama_0449 0.84 +0.4
556,593 + Sama_0449 0.84 -1.2
556,594 - Sama_0449 0.84 +0.2
556,594 - Sama_0449 0.84 +1.1
556,596 + Sama_0449 0.84 -1.3
556,596 + Sama_0449 0.84 -1.8
556,596 + Sama_0449 0.84 -0.6
556,596 + Sama_0449 0.84 -1.6
556,597 - Sama_0449 0.84 -0.4
556,597 - Sama_0449 0.84 -0.2
556,597 - Sama_0449 0.84 +0.8
556,597 - Sama_0449 0.84 -0.8
556,597 - Sama_0449 0.84 +0.1
556,605 + Sama_0449 0.85 -0.4
556,605 + Sama_0449 0.85 -1.8
556,605 + Sama_0449 0.85 +0.3
556,606 - Sama_0449 0.85 +0.2
556,606 - Sama_0449 0.85 -0.2
556,620 + Sama_0449 0.85 -1.2
556,620 + Sama_0449 0.85 -1.3
556,649 + Sama_0449 0.87 -1.3
556,650 - Sama_0449 0.87 -0.6
556,663 + Sama_0449 0.88 +1.8
556,663 + Sama_0449 0.88 -2.3
556,663 + Sama_0449 0.88 +1.0
556,664 - Sama_0449 0.88 -0.2
556,664 - Sama_0449 0.88 +1.0
556,664 - Sama_0449 0.88 +0.5
556,664 - Sama_0449 0.88 -0.6
556,664 - Sama_0449 0.88 -0.4
556,664 - Sama_0449 0.88 -1.0
556,665 + Sama_0449 0.88 -0.7
556,665 + Sama_0449 0.88 -0.1
556,665 + Sama_0449 0.88 -0.2
556,683 + Sama_0449 0.89 -0.1
556,684 - Sama_0449 0.89 +0.5
556,689 + Sama_0449 0.89 +0.0
556,689 + Sama_0449 0.89 +0.3
556,721 + -0.8
556,727 + -2.0
556,727 + +0.3
556,728 - +0.4
556,728 - -0.6
556,728 - -0.4
556,728 - -1.1
556,760 + -2.2
556,788 - -0.4
556,788 - +0.2
556,788 - -1.6
556,788 - -0.4
556,788 - +0.0
556,788 - -0.0
556,870 + -0.3
556,870 + -1.1
556,870 + -0.1
556,870 + -0.7
556,871 - -1.6
556,947 + +0.0
556,955 - -0.2
556,957 + -1.6
556,957 + -0.0
556,957 + -0.6
556,957 + -0.8
556,958 - +1.3
556,968 + +0.0
556,968 + +1.2
556,968 + -0.7
556,968 + +0.1
556,968 + -0.7
556,969 - +0.0
556,969 - +1.3
556,972 + -0.2
556,981 + +2.6
556,985 + -0.1
556,989 + -0.2
556,989 + +0.4
556,989 + -0.6
556,989 + +1.4
556,990 - +0.8
556,990 - +4.5
556,990 - +1.2
556,990 - +0.6
556,993 - +0.7
557,038 + +1.2
557,039 - +0.9
557,039 - +1.4
557,055 - +0.6
557,130 + +0.6
557,130 + +2.2
557,130 + +0.8
557,130 + +0.8
557,130 + +1.2
557,131 - +1.6
557,131 - +1.3
557,236 + Sama_0450 0.19 +1.2
557,236 + Sama_0450 0.19 +0.0
557,237 - Sama_0450 0.20 +0.2
557,272 + Sama_0450 0.24 +1.0
557,272 + Sama_0450 0.24 +1.2
557,273 - Sama_0450 0.24 +1.0
557,273 - Sama_0450 0.24 +1.7
557,290 - Sama_0450 0.26 +1.0
557,360 + Sama_0450 0.34 +0.9
557,360 + Sama_0450 0.34 +0.4
557,360 + Sama_0450 0.34 +0.8
557,360 + Sama_0450 0.34 +0.1
557,361 - Sama_0450 0.34 +1.1
557,361 - Sama_0450 0.34 +0.7
557,361 - Sama_0450 0.34 -0.3
557,403 + Sama_0450 0.39 +0.6
557,403 + Sama_0450 0.39 +0.4
557,421 - Sama_0450 0.41 +1.3
557,437 + Sama_0450 0.43 +0.7
557,437 + Sama_0450 0.43 +0.9
557,509 + Sama_0450 0.51 +0.6
557,509 + Sama_0450 0.51 +0.7
557,510 - Sama_0450 0.51 +1.3
557,523 - Sama_0450 0.52 -0.3
557,523 - Sama_0450 0.52 +0.6
557,581 + Sama_0450 0.59 +1.1
557,582 - Sama_0450 0.59 +0.7
557,582 - Sama_0450 0.59 +1.9
557,605 + Sama_0450 0.62 +0.4
557,605 + Sama_0450 0.62 -0.1
557,605 + Sama_0450 0.62 +0.0
557,606 - Sama_0450 0.62 +0.8
557,606 - Sama_0450 0.62 +2.2
557,681 - Sama_0450 0.71 +1.3
557,700 + Sama_0450 0.73 +1.9
557,700 + Sama_0450 0.73 +0.6
557,748 + Sama_0450 0.78 +1.4
557,748 + Sama_0450 0.78 +0.6
557,748 + Sama_0450 0.78 +1.6
557,748 + Sama_0450 0.78 +0.8
557,749 - Sama_0450 0.78 +2.2
557,788 + Sama_0450 0.83 +0.8
557,788 + Sama_0450 0.83 +1.3
557,788 + Sama_0450 0.83 +2.2
557,788 + Sama_0450 0.83 +0.5
557,788 + Sama_0450 0.83 +1.2
557,788 + Sama_0450 0.83 +2.3
557,788 + Sama_0450 0.83 +1.2
557,789 - Sama_0450 0.83 +0.7
557,789 - Sama_0450 0.83 +0.9
557,789 - Sama_0450 0.83 +1.5
557,789 - Sama_0450 0.83 +1.1
557,789 - Sama_0450 0.83 +1.4
557,870 + +1.0
557,871 - +1.5
557,955 + +0.6
557,955 + +0.6
557,955 + +0.8
557,956 - +2.6
557,956 - +0.9
558,037 - Sama_0451 0.17 +1.5
558,082 - Sama_0451 0.25 +2.2
558,094 + Sama_0451 0.27 +1.1
558,094 + Sama_0451 0.27 +1.2
558,094 + Sama_0451 0.27 +1.0
558,094 + Sama_0451 0.27 +0.8
558,094 + Sama_0451 0.27 +1.7
558,094 + Sama_0451 0.27 +1.2
558,095 - Sama_0451 0.27 +1.1
558,095 - Sama_0451 0.27 +0.4
558,095 - Sama_0451 0.27 +2.3
558,095 - Sama_0451 0.27 +0.9
558,095 - Sama_0451 0.27 +0.3
558,095 - Sama_0451 0.27 +0.1
558,098 - Sama_0451 0.27 +0.9
558,278 + Sama_0451 0.57 +1.9
558,278 + Sama_0451 0.57 +0.0
558,289 + Sama_0451 0.59 -0.1
558,289 + Sama_0451 0.59 +1.3
558,289 + Sama_0451 0.59 +1.7
558,290 - Sama_0451 0.59 -1.6
558,290 - Sama_0451 0.59 +2.0
558,290 - Sama_0451 0.59 +0.2
558,290 - Sama_0451 0.59 +0.4
558,418 + Sama_0451 0.80 +1.1
558,418 + Sama_0451 0.80 -1.8
558,418 + Sama_0451 0.80 +0.9
558,418 + Sama_0451 0.80 +1.3
558,419 - Sama_0451 0.81 +0.4
558,481 + +1.4
558,497 - +0.9
558,497 - +1.5
558,497 - +0.0
558,578 + +2.7
558,578 + -0.8
558,578 + +0.0
558,578 + +1.0
558,578 + +0.5
558,578 + +1.4
558,578 + +0.7
558,579 - +0.8
558,594 + +1.4
558,624 + Sama_0452 0.14 +0.9
558,624 + Sama_0452 0.14 +0.6
558,624 + Sama_0452 0.14 +0.9
558,624 + Sama_0452 0.14 +1.1
558,624 + Sama_0452 0.14 +0.4
558,624 + Sama_0452 0.14 +0.8
558,624 + Sama_0452 0.14 +0.4
558,624 + Sama_0452 0.14 -0.0
558,624 + Sama_0452 0.14 +1.3
558,624 + Sama_0452 0.14 +1.4
558,624 + Sama_0452 0.14 +1.2
558,625 - Sama_0452 0.14 +2.3
558,625 - Sama_0452 0.14 +1.6
558,625 - Sama_0452 0.14 -0.6
558,625 - Sama_0452 0.14 +1.1
558,625 - Sama_0452 0.14 +0.6
558,625 - Sama_0452 0.14 +0.8
558,625 - Sama_0452 0.14 +1.0
558,625 - Sama_0452 0.14 +1.0
558,665 - Sama_0452 0.20 +1.2
558,687 - Sama_0452 0.24 +0.3
558,728 + Sama_0452 0.30 +0.0
558,728 + Sama_0452 0.30 +1.0
558,728 + Sama_0452 0.30 +1.6
558,728 + Sama_0452 0.30 +1.0
558,728 + Sama_0452 0.30 +0.5
558,728 + Sama_0452 0.30 +0.0
558,728 + Sama_0452 0.30 +0.6
558,729 - Sama_0452 0.30 +0.7
558,729 - Sama_0452 0.30 +0.6
558,729 - Sama_0452 0.30 +1.5
558,729 - Sama_0452 0.30 +1.4
558,729 - Sama_0452 0.30 +1.0
558,736 + Sama_0452 0.31 +1.5
558,737 - Sama_0452 0.31 +0.0
558,737 - Sama_0452 0.31 +1.6
558,846 + Sama_0452 0.48 -0.0
558,847 - Sama_0452 0.48 +1.6

Or see this region's nucleotide sequence