Strain Fitness in Shewanella amazonensis SB2B around Sama_0345

Experiment: Minimal media, 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0344 and Sama_0345 are separated by 354 nucleotidesSama_0345 and mraW are separated by 31 nucleotidesmraW and Sama_0347 are separated by 10 nucleotides Sama_0344: Sama_0344 - PepSY-associated TM helix (RefSeq), at 413,375 to 414,091 _0344 Sama_0345: Sama_0345 - cell division protein MraZ (RefSeq), at 414,446 to 414,904 _0345 Sama_0346: mraW - S-adenosyl-methyltransferase MraW (RefSeq), at 414,936 to 415,877 mraW Sama_0347: Sama_0347 - cell division protein FtsL (RefSeq), at 415,888 to 416,199 _0347 Position (kb) 414 415Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 413.447 kb on + strand, within Sama_0344at 413.448 kb on - strand, within Sama_0344at 413.457 kb on - strand, within Sama_0344at 413.491 kb on + strand, within Sama_0344at 413.491 kb on + strand, within Sama_0344at 413.492 kb on - strand, within Sama_0344at 413.501 kb on - strand, within Sama_0344at 413.501 kb on - strand, within Sama_0344at 413.501 kb on - strand, within Sama_0344at 413.501 kb on - strand, within Sama_0344at 413.518 kb on - strand, within Sama_0344at 413.518 kb on - strand, within Sama_0344at 413.568 kb on + strand, within Sama_0344at 413.568 kb on + strand, within Sama_0344at 413.569 kb on - strand, within Sama_0344at 413.569 kb on - strand, within Sama_0344at 413.575 kb on + strand, within Sama_0344at 413.608 kb on - strand, within Sama_0344at 413.646 kb on + strand, within Sama_0344at 413.646 kb on + strand, within Sama_0344at 413.647 kb on - strand, within Sama_0344at 413.654 kb on + strand, within Sama_0344at 413.654 kb on + strand, within Sama_0344at 413.654 kb on + strand, within Sama_0344at 413.694 kb on + strand, within Sama_0344at 413.694 kb on + strand, within Sama_0344at 413.713 kb on + strand, within Sama_0344at 413.714 kb on - strand, within Sama_0344at 413.714 kb on - strand, within Sama_0344at 413.728 kb on + strand, within Sama_0344at 413.728 kb on + strand, within Sama_0344at 413.729 kb on - strand, within Sama_0344at 413.729 kb on - strand, within Sama_0344at 413.729 kb on - strand, within Sama_0344at 413.729 kb on - strand, within Sama_0344at 413.729 kb on - strand, within Sama_0344at 413.729 kb on - strand, within Sama_0344at 413.730 kb on + strand, within Sama_0344at 413.732 kb on + strand, within Sama_0344at 413.732 kb on + strand, within Sama_0344at 413.732 kb on + strand, within Sama_0344at 413.732 kb on + strand, within Sama_0344at 413.732 kb on + strand, within Sama_0344at 413.732 kb on + strand, within Sama_0344at 413.732 kb on + strand, within Sama_0344at 413.732 kb on + strand, within Sama_0344at 413.732 kb on + strand, within Sama_0344at 413.733 kb on - strand, within Sama_0344at 413.733 kb on - strand, within Sama_0344at 413.733 kb on - strand, within Sama_0344at 413.733 kb on - strand, within Sama_0344at 413.733 kb on - strand, within Sama_0344at 413.733 kb on - strand, within Sama_0344at 413.733 kb on - strand, within Sama_0344at 413.733 kb on - strand, within Sama_0344at 413.733 kb on - strand, within Sama_0344at 413.733 kb on - strand, within Sama_0344at 413.733 kb on - strand, within Sama_0344at 413.777 kb on + strand, within Sama_0344at 413.778 kb on - strand, within Sama_0344at 413.778 kb on - strand, within Sama_0344at 413.813 kb on + strand, within Sama_0344at 413.813 kb on + strand, within Sama_0344at 413.814 kb on - strand, within Sama_0344at 413.814 kb on - strand, within Sama_0344at 413.814 kb on - strand, within Sama_0344at 413.827 kb on + strand, within Sama_0344at 413.835 kb on + strand, within Sama_0344at 413.835 kb on + strand, within Sama_0344at 413.918 kb on + strand, within Sama_0344at 413.919 kb on - strand, within Sama_0344at 413.919 kb on - strand, within Sama_0344at 413.942 kb on + strand, within Sama_0344at 413.942 kb on + strand, within Sama_0344at 413.942 kb on + strand, within Sama_0344at 413.943 kb on - strand, within Sama_0344at 413.974 kb on + strand, within Sama_0344at 413.974 kb on + strand, within Sama_0344at 413.974 kb on + strand, within Sama_0344at 413.975 kb on - strand, within Sama_0344at 413.975 kb on - strand, within Sama_0344at 413.975 kb on - strand, within Sama_0344at 413.981 kb on + strand, within Sama_0344at 413.981 kb on + strand, within Sama_0344at 413.982 kb on - strand, within Sama_0344at 413.982 kb on - strand, within Sama_0344at 413.998 kb on + strand, within Sama_0344at 413.998 kb on + strand, within Sama_0344at 413.998 kb on + strand, within Sama_0344at 413.998 kb on + strand, within Sama_0344at 413.998 kb on + strand, within Sama_0344at 413.999 kb on - strand, within Sama_0344at 413.999 kb on - strand, within Sama_0344at 413.999 kb on - strand, within Sama_0344at 413.999 kb on - strand, within Sama_0344at 413.999 kb on - strand, within Sama_0344at 413.999 kb on - strand, within Sama_0344at 413.999 kb on - strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.032 kb on + strandat 414.032 kb on + strandat 414.032 kb on + strandat 414.032 kb on + strandat 414.032 kb on + strandat 414.032 kb on + strandat 414.032 kb on + strandat 414.032 kb on + strandat 414.033 kb on - strandat 414.033 kb on - strandat 414.033 kb on - strandat 414.033 kb on - strandat 414.033 kb on - strandat 414.033 kb on - strandat 414.038 kb on + strandat 414.039 kb on - strandat 414.070 kb on + strandat 414.070 kb on + strandat 414.070 kb on + strandat 414.092 kb on + strandat 414.092 kb on + strandat 414.179 kb on - strandat 414.234 kb on + strandat 414.234 kb on + strandat 414.234 kb on + strandat 414.235 kb on - strandat 414.235 kb on - strandat 414.235 kb on - strandat 414.235 kb on - strandat 414.235 kb on - strandat 414.257 kb on + strandat 414.333 kb on + strandat 414.357 kb on + strandat 414.357 kb on + strandat 414.375 kb on + strandat 414.419 kb on + strandat 414.583 kb on + strand, within Sama_0345at 414.583 kb on + strand, within Sama_0345at 414.583 kb on + strand, within Sama_0345at 414.583 kb on + strand, within Sama_0345at 414.583 kb on + strand, within Sama_0345at 414.583 kb on + strand, within Sama_0345at 414.583 kb on + strand, within Sama_0345at 414.583 kb on + strand, within Sama_0345at 414.587 kb on + strand, within Sama_0345at 414.696 kb on + strand, within Sama_0345at 414.726 kb on + strand, within Sama_0345at 414.746 kb on + strand, within Sama_0345at 414.921 kb on + strandat 414.921 kb on + strandat 414.921 kb on + strandat 414.921 kb on + strandat 414.921 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media, 20C
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413,447 + Sama_0344 0.10 +0.3
413,448 - Sama_0344 0.10 -0.8
413,457 - Sama_0344 0.11 -0.5
413,491 + Sama_0344 0.16 +0.1
413,491 + Sama_0344 0.16 -0.3
413,492 - Sama_0344 0.16 -0.1
413,501 - Sama_0344 0.18 +0.3
413,501 - Sama_0344 0.18 -1.7
413,501 - Sama_0344 0.18 -1.5
413,501 - Sama_0344 0.18 -0.3
413,518 - Sama_0344 0.20 +0.0
413,518 - Sama_0344 0.20 +0.2
413,568 + Sama_0344 0.27 +0.8
413,568 + Sama_0344 0.27 -0.3
413,569 - Sama_0344 0.27 -0.0
413,569 - Sama_0344 0.27 +0.5
413,575 + Sama_0344 0.28 -0.1
413,608 - Sama_0344 0.32 -1.4
413,646 + Sama_0344 0.38 -0.7
413,646 + Sama_0344 0.38 -0.1
413,647 - Sama_0344 0.38 -0.7
413,654 + Sama_0344 0.39 +1.2
413,654 + Sama_0344 0.39 +0.2
413,654 + Sama_0344 0.39 -0.3
413,694 + Sama_0344 0.44 -0.4
413,694 + Sama_0344 0.44 +0.2
413,713 + Sama_0344 0.47 +0.7
413,714 - Sama_0344 0.47 -0.9
413,714 - Sama_0344 0.47 -0.9
413,728 + Sama_0344 0.49 -0.5
413,728 + Sama_0344 0.49 -1.8
413,729 - Sama_0344 0.49 -0.2
413,729 - Sama_0344 0.49 -0.1
413,729 - Sama_0344 0.49 -0.2
413,729 - Sama_0344 0.49 +0.0
413,729 - Sama_0344 0.49 -3.1
413,729 - Sama_0344 0.49 -1.6
413,730 + Sama_0344 0.50 -0.2
413,732 + Sama_0344 0.50 -1.6
413,732 + Sama_0344 0.50 -0.4
413,732 + Sama_0344 0.50 +0.1
413,732 + Sama_0344 0.50 -2.8
413,732 + Sama_0344 0.50 -0.4
413,732 + Sama_0344 0.50 +0.4
413,732 + Sama_0344 0.50 -0.2
413,732 + Sama_0344 0.50 -1.9
413,732 + Sama_0344 0.50 +0.4
413,733 - Sama_0344 0.50 -0.9
413,733 - Sama_0344 0.50 -0.1
413,733 - Sama_0344 0.50 -0.4
413,733 - Sama_0344 0.50 -0.7
413,733 - Sama_0344 0.50 +1.1
413,733 - Sama_0344 0.50 +0.9
413,733 - Sama_0344 0.50 +0.5
413,733 - Sama_0344 0.50 -0.4
413,733 - Sama_0344 0.50 +0.2
413,733 - Sama_0344 0.50 +0.9
413,733 - Sama_0344 0.50 +0.9
413,777 + Sama_0344 0.56 +0.4
413,778 - Sama_0344 0.56 -1.1
413,778 - Sama_0344 0.56 -0.8
413,813 + Sama_0344 0.61 -1.4
413,813 + Sama_0344 0.61 +0.8
413,814 - Sama_0344 0.61 +0.3
413,814 - Sama_0344 0.61 +0.7
413,814 - Sama_0344 0.61 -0.9
413,827 + Sama_0344 0.63 -0.2
413,835 + Sama_0344 0.64 +0.1
413,835 + Sama_0344 0.64 -0.0
413,918 + Sama_0344 0.76 -0.8
413,919 - Sama_0344 0.76 +0.7
413,919 - Sama_0344 0.76 +0.8
413,942 + Sama_0344 0.79 -0.8
413,942 + Sama_0344 0.79 -1.2
413,942 + Sama_0344 0.79 -0.5
413,943 - Sama_0344 0.79 -0.2
413,974 + Sama_0344 0.84 -0.1
413,974 + Sama_0344 0.84 -0.6
413,974 + Sama_0344 0.84 -1.2
413,975 - Sama_0344 0.84 +0.4
413,975 - Sama_0344 0.84 -1.4
413,975 - Sama_0344 0.84 -2.1
413,981 + Sama_0344 0.85 -1.6
413,981 + Sama_0344 0.85 +0.1
413,982 - Sama_0344 0.85 +0.8
413,982 - Sama_0344 0.85 +0.1
413,998 + Sama_0344 0.87 +0.8
413,998 + Sama_0344 0.87 -0.5
413,998 + Sama_0344 0.87 +0.2
413,998 + Sama_0344 0.87 +0.1
413,998 + Sama_0344 0.87 -0.4
413,999 - Sama_0344 0.87 +0.8
413,999 - Sama_0344 0.87 -0.4
413,999 - Sama_0344 0.87 +1.4
413,999 - Sama_0344 0.87 +0.1
413,999 - Sama_0344 0.87 -0.4
413,999 - Sama_0344 0.87 -1.5
413,999 - Sama_0344 0.87 +0.2
414,000 + Sama_0344 0.87 -1.0
414,000 + Sama_0344 0.87 -0.1
414,000 + Sama_0344 0.87 -0.8
414,000 + Sama_0344 0.87 -1.1
414,000 + Sama_0344 0.87 -0.3
414,000 + Sama_0344 0.87 +0.8
414,000 + Sama_0344 0.87 -1.7
414,000 + Sama_0344 0.87 -0.5
414,000 + Sama_0344 0.87 +0.1
414,000 + Sama_0344 0.87 +0.1
414,000 + Sama_0344 0.87 -1.0
414,000 + Sama_0344 0.87 -0.0
414,000 + Sama_0344 0.87 -0.1
414,000 + Sama_0344 0.87 -2.2
414,001 - Sama_0344 0.87 +1.7
414,001 - Sama_0344 0.87 +0.1
414,001 - Sama_0344 0.87 -0.6
414,001 - Sama_0344 0.87 -0.3
414,001 - Sama_0344 0.87 -0.1
414,001 - Sama_0344 0.87 -0.4
414,001 - Sama_0344 0.87 -0.4
414,001 - Sama_0344 0.87 +0.5
414,001 - Sama_0344 0.87 -0.2
414,001 - Sama_0344 0.87 +0.4
414,001 - Sama_0344 0.87 -0.6
414,001 - Sama_0344 0.87 +0.7
414,001 - Sama_0344 0.87 +0.7
414,032 + +0.5
414,032 + +0.0
414,032 + -0.1
414,032 + +0.5
414,032 + +0.4
414,032 + +0.4
414,032 + -0.2
414,032 + -1.2
414,033 - +0.2
414,033 - +0.6
414,033 - +0.4
414,033 - -1.7
414,033 - -0.2
414,033 - +0.6
414,038 + +0.4
414,039 - -2.5
414,070 + -1.1
414,070 + -1.1
414,070 + -0.1
414,092 + +0.5
414,092 + +0.9
414,179 - -0.9
414,234 + -1.9
414,234 + -1.3
414,234 + +0.7
414,235 - +0.4
414,235 - +0.2
414,235 - -0.3
414,235 - -0.6
414,235 - +0.4
414,257 + -1.0
414,333 + -1.8
414,357 + -2.3
414,357 + -1.3
414,375 + -2.5
414,419 + -1.1
414,583 + Sama_0345 0.30 -2.8
414,583 + Sama_0345 0.30 -0.9
414,583 + Sama_0345 0.30 -4.6
414,583 + Sama_0345 0.30 -2.5
414,583 + Sama_0345 0.30 -0.6
414,583 + Sama_0345 0.30 -2.0
414,583 + Sama_0345 0.30 -1.4
414,583 + Sama_0345 0.30 -2.1
414,587 + Sama_0345 0.31 -2.2
414,696 + Sama_0345 0.54 -2.4
414,726 + Sama_0345 0.61 -2.8
414,746 + Sama_0345 0.65 -3.5
414,921 + -2.2
414,921 + -3.0
414,921 + -2.3
414,921 + -1.2
414,921 + +0.7
414,923 + -0.7
414,923 + -1.3
414,923 + -1.9
414,923 + +0.1
414,923 + -1.4
414,923 + -1.9
414,923 + -1.1
414,923 + -0.2
414,923 + -2.2
414,923 + -1.4
414,923 + +0.2
414,923 + -2.6
414,923 + -1.2

Or see this region's nucleotide sequence