Experiment: LB 30C timecourse1 timepoint 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0757 and Psest_0758 are separated by 114 nucleotides Psest_0758 and Psest_0759 are separated by 60 nucleotides Psest_0759 and Psest_0760 are separated by 294 nucleotides Psest_0760 and Psest_0761 are separated by 25 nucleotides
Psest_0757: Psest_0757 - hypothetical protein, at 827,694 to 828,167
_0757
Psest_0758: Psest_0758 - Lactoylglutathione lyase and related lyases, at 828,282 to 828,671
_0758
Psest_0759: Psest_0759 - Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)., at 828,732 to 829,478
_0759
Psest_0760: Psest_0760 - Polyketide cyclase / dehydrase and lipid transport., at 829,773 to 830,168
_0760
Psest_0761: Psest_0761 - Predicted permease, DMT superfamily, at 830,194 to 831,318
_0761
Position (kb) 828
829
830 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 827.840 kb on - strand, within Psest_0757 at 827.852 kb on - strand, within Psest_0757 at 827.912 kb on + strand, within Psest_0757 at 828.016 kb on - strand, within Psest_0757 at 828.094 kb on + strand, within Psest_0757 at 828.095 kb on - strand, within Psest_0757 at 828.095 kb on - strand, within Psest_0757 at 828.095 kb on - strand, within Psest_0757 at 828.095 kb on - strand, within Psest_0757 at 828.355 kb on + strand, within Psest_0758 at 828.356 kb on - strand, within Psest_0758 at 828.356 kb on - strand, within Psest_0758 at 828.356 kb on - strand, within Psest_0758 at 828.547 kb on + strand, within Psest_0758 at 828.547 kb on + strand, within Psest_0758 at 828.548 kb on - strand, within Psest_0758 at 828.548 kb on - strand, within Psest_0758 at 828.548 kb on - strand, within Psest_0758 at 828.548 kb on - strand, within Psest_0758 at 828.607 kb on + strand, within Psest_0758 at 828.607 kb on + strand, within Psest_0758 at 828.607 kb on + strand, within Psest_0758 at 828.607 kb on + strand, within Psest_0758 at 828.608 kb on - strand, within Psest_0758 at 828.608 kb on - strand, within Psest_0758 at 828.608 kb on - strand, within Psest_0758 at 828.608 kb on - strand, within Psest_0758 at 828.608 kb on - strand, within Psest_0758 at 828.608 kb on - strand, within Psest_0758 at 828.629 kb on - strand, within Psest_0758 at 828.629 kb on - strand, within Psest_0758 at 828.629 kb on - strand, within Psest_0758 at 828.663 kb on + strand at 828.663 kb on + strand at 828.663 kb on + strand at 828.664 kb on - strand at 828.664 kb on - strand at 828.693 kb on - strand at 828.765 kb on + strand at 828.765 kb on + strand at 828.765 kb on + strand at 828.765 kb on + strand at 828.765 kb on + strand at 828.765 kb on + strand at 828.766 kb on - strand at 828.769 kb on + strand at 828.769 kb on + strand at 828.769 kb on + strand at 828.769 kb on + strand at 828.770 kb on - strand at 828.770 kb on - strand at 828.770 kb on - strand at 828.779 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.782 kb on - strand at 828.782 kb on - strand at 828.782 kb on - strand at 828.782 kb on - strand at 828.782 kb on - strand at 828.791 kb on - strand at 828.943 kb on + strand, within Psest_0759 at 829.042 kb on - strand, within Psest_0759 at 829.400 kb on + strand, within Psest_0759 at 829.600 kb on + strand at 829.601 kb on - strand at 829.601 kb on - strand at 829.601 kb on - strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.726 kb on - strand at 829.726 kb on - strand at 829.726 kb on - strand at 829.726 kb on - strand at 829.726 kb on - strand at 829.791 kb on - strand at 829.827 kb on + strand, within Psest_0760 at 829.827 kb on + strand, within Psest_0760 at 829.827 kb on + strand, within Psest_0760 at 829.827 kb on + strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.856 kb on - strand, within Psest_0760 at 830.088 kb on - strand, within Psest_0760 at 830.272 kb on + strand at 830.272 kb on + strand at 830.272 kb on + strand at 830.347 kb on - strand, within Psest_0761 at 830.353 kb on + strand, within Psest_0761 at 830.387 kb on + strand, within Psest_0761 at 830.387 kb on + strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 3 remove 827,840 - Psest_0757 0.31 -0.3 827,852 - Psest_0757 0.33 -0.6 827,912 + Psest_0757 0.46 -1.6 828,016 - Psest_0757 0.68 +0.3 828,094 + Psest_0757 0.84 -0.2 828,095 - Psest_0757 0.85 +0.1 828,095 - Psest_0757 0.85 -1.4 828,095 - Psest_0757 0.85 -1.2 828,095 - Psest_0757 0.85 -0.1 828,355 + Psest_0758 0.19 -0.3 828,356 - Psest_0758 0.19 +0.3 828,356 - Psest_0758 0.19 -0.8 828,356 - Psest_0758 0.19 +0.3 828,547 + Psest_0758 0.68 +0.1 828,547 + Psest_0758 0.68 +0.8 828,548 - Psest_0758 0.68 -0.0 828,548 - Psest_0758 0.68 +0.6 828,548 - Psest_0758 0.68 +0.5 828,548 - Psest_0758 0.68 -1.5 828,607 + Psest_0758 0.83 +0.9 828,607 + Psest_0758 0.83 +0.9 828,607 + Psest_0758 0.83 -1.8 828,607 + Psest_0758 0.83 +0.6 828,608 - Psest_0758 0.84 +0.6 828,608 - Psest_0758 0.84 -2.1 828,608 - Psest_0758 0.84 +0.3 828,608 - Psest_0758 0.84 +0.4 828,608 - Psest_0758 0.84 +1.4 828,608 - Psest_0758 0.84 +1.0 828,629 - Psest_0758 0.89 -1.5 828,629 - Psest_0758 0.89 +0.7 828,629 - Psest_0758 0.89 +1.0 828,663 + +0.8 828,663 + +0.1 828,663 + +0.5 828,664 - +0.1 828,664 - +0.9 828,693 - -0.0 828,765 + +0.3 828,765 + +0.1 828,765 + -0.1 828,765 + -0.5 828,765 + +0.5 828,765 + +0.6 828,766 - -0.4 828,769 + -1.8 828,769 + -1.6 828,769 + -2.2 828,769 + -0.1 828,770 - -0.0 828,770 - +1.1 828,770 - +1.8 828,779 + -0.8 828,781 + -0.5 828,781 + -0.6 828,781 + -0.3 828,781 + +0.3 828,781 + -0.1 828,781 + +0.1 828,781 + -2.1 828,781 + +0.2 828,781 + +0.2 828,781 + +1.7 828,781 + -0.3 828,781 + +0.8 828,781 + +0.1 828,781 + +0.1 828,781 + -0.3 828,781 + +1.4 828,781 + -0.3 828,781 + -0.1 828,782 - -0.2 828,782 - +2.5 828,782 - +0.9 828,782 - -0.7 828,782 - -0.2 828,791 - +0.6 828,943 + Psest_0759 0.28 +0.9 829,042 - Psest_0759 0.41 +1.1 829,400 + Psest_0759 0.89 +3.1 829,600 + -0.7 829,601 - -1.7 829,601 - +1.1 829,601 - -1.0 829,725 + -1.4 829,725 + +0.7 829,725 + -0.2 829,725 + -0.3 829,725 + -2.6 829,725 + -0.5 829,725 + -0.7 829,725 + -1.1 829,725 + +3.1 829,725 + +0.1 829,725 + +0.4 829,726 - -0.3 829,726 - -1.4 829,726 - -2.4 829,726 - +2.2 829,726 - -1.1 829,791 - -0.1 829,827 + Psest_0760 0.14 +1.0 829,827 + Psest_0760 0.14 -0.1 829,827 + Psest_0760 0.14 -0.1 829,827 + Psest_0760 0.14 +0.8 829,828 - Psest_0760 0.14 +2.3 829,828 - Psest_0760 0.14 +1.1 829,828 - Psest_0760 0.14 +1.7 829,828 - Psest_0760 0.14 +0.1 829,828 - Psest_0760 0.14 +0.5 829,856 - Psest_0760 0.21 +0.2 830,088 - Psest_0760 0.80 +1.8 830,272 + -1.9 830,272 + -0.8 830,272 + -1.0 830,347 - Psest_0761 0.14 +0.4 830,353 + Psest_0761 0.14 -0.6 830,387 + Psest_0761 0.17 -0.1 830,387 + Psest_0761 0.17 +0.1 830,388 - Psest_0761 0.17 +0.2 830,388 - Psest_0761 0.17 +0.4 830,388 - Psest_0761 0.17 -0.4 830,388 - Psest_0761 0.17 -1.0 830,388 - Psest_0761 0.17 -0.8 830,388 - Psest_0761 0.17 +0.4
Or see this region's nucleotide sequence