Experiment: LB 30C timecourse1 timepoint 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0718 and Psest_0719 are separated by 48 nucleotides Psest_0719 and Psest_0720 are separated by 138 nucleotides Psest_0720 and Psest_0721 are separated by 45 nucleotides
Psest_0718: Psest_0718 - nicotinate-nucleotide pyrophosphorylase, at 787,802 to 788,650
_0718
Psest_0719: Psest_0719 - Uncharacterized protein conserved in bacteria, at 788,699 to 789,130
_0719
Psest_0720: Psest_0720 - Predicted hydrolase of the alpha/beta superfamily, at 789,269 to 789,895
_0720
Psest_0721: Psest_0721 - tryptophanyl-tRNA synthetase, at 789,941 to 791,299
_0721
Position (kb) 789
790 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 788.291 kb on + strand, within Psest_0718 at 788.291 kb on + strand, within Psest_0718 at 788.305 kb on + strand, within Psest_0718 at 788.305 kb on + strand, within Psest_0718 at 788.306 kb on - strand, within Psest_0718 at 788.447 kb on - strand, within Psest_0718 at 788.582 kb on + strand at 788.582 kb on + strand at 788.582 kb on + strand at 788.582 kb on + strand at 788.582 kb on + strand at 788.582 kb on + strand at 788.582 kb on + strand at 788.582 kb on + strand at 788.582 kb on + strand at 788.582 kb on + strand at 788.582 kb on + strand at 788.582 kb on + strand at 788.582 kb on + strand at 788.582 kb on + strand at 788.582 kb on + strand at 788.583 kb on - strand at 788.583 kb on - strand at 788.583 kb on - strand at 788.583 kb on - strand at 788.583 kb on - strand at 788.583 kb on - strand at 788.583 kb on - strand at 788.583 kb on - strand at 788.583 kb on - strand at 788.583 kb on - strand at 788.583 kb on - strand at 788.583 kb on - strand at 788.583 kb on - strand at 788.583 kb on - strand at 788.583 kb on - strand at 788.583 kb on - strand at 788.583 kb on - strand at 788.583 kb on - strand at 788.583 kb on - strand at 788.584 kb on + strand at 788.584 kb on + strand at 788.584 kb on + strand at 788.584 kb on + strand at 788.584 kb on + strand at 788.584 kb on + strand at 788.584 kb on + strand at 788.584 kb on + strand at 788.585 kb on - strand at 788.585 kb on - strand at 788.585 kb on - strand at 788.585 kb on - strand at 788.585 kb on - strand at 788.585 kb on - strand at 788.585 kb on - strand at 788.585 kb on - strand at 788.585 kb on - strand at 788.585 kb on - strand at 788.629 kb on - strand at 788.900 kb on + strand, within Psest_0719 at 788.900 kb on + strand, within Psest_0719 at 788.922 kb on + strand, within Psest_0719 at 788.923 kb on - strand, within Psest_0719 at 788.923 kb on - strand, within Psest_0719 at 788.926 kb on + strand, within Psest_0719 at 788.926 kb on + strand, within Psest_0719 at 788.926 kb on + strand, within Psest_0719 at 788.988 kb on + strand, within Psest_0719 at 788.989 kb on - strand, within Psest_0719 at 788.989 kb on - strand, within Psest_0719 at 788.989 kb on - strand, within Psest_0719 at 788.989 kb on - strand, within Psest_0719 at 789.031 kb on + strand, within Psest_0719 at 789.032 kb on - strand, within Psest_0719 at 789.032 kb on - strand, within Psest_0719 at 789.143 kb on + strand at 789.143 kb on + strand at 789.143 kb on + strand at 789.143 kb on + strand at 789.144 kb on - strand at 789.144 kb on - strand at 789.144 kb on - strand at 789.144 kb on - strand at 789.144 kb on - strand at 789.144 kb on - strand at 789.145 kb on + strand at 789.145 kb on + strand at 789.145 kb on + strand at 789.146 kb on - strand at 789.146 kb on - strand at 789.146 kb on - strand at 789.146 kb on - strand at 789.147 kb on + strand at 789.147 kb on + strand at 789.147 kb on + strand at 789.147 kb on + strand at 789.147 kb on + strand at 789.147 kb on + strand at 789.147 kb on + strand at 789.148 kb on - strand at 789.148 kb on - strand at 789.148 kb on - strand at 789.148 kb on - strand at 789.148 kb on - strand at 789.148 kb on - strand at 789.148 kb on - strand at 789.148 kb on - strand at 789.148 kb on - strand at 789.148 kb on - strand at 789.148 kb on - strand at 789.161 kb on + strand at 789.161 kb on + strand at 789.161 kb on + strand at 789.161 kb on + strand at 789.161 kb on + strand at 789.161 kb on + strand at 789.161 kb on + strand at 789.161 kb on + strand at 789.162 kb on - strand at 789.162 kb on - strand at 789.162 kb on - strand at 789.162 kb on - strand at 789.162 kb on - strand at 789.162 kb on - strand at 789.162 kb on - strand at 789.162 kb on - strand at 789.162 kb on - strand at 789.162 kb on - strand at 789.176 kb on + strand at 789.187 kb on + strand at 789.188 kb on - strand at 789.188 kb on - strand at 789.188 kb on - strand at 789.188 kb on - strand at 789.188 kb on - strand at 789.188 kb on - strand at 789.188 kb on - strand at 789.221 kb on + strand at 789.221 kb on + strand at 789.221 kb on + strand at 789.221 kb on + strand at 789.221 kb on + strand at 789.221 kb on + strand at 789.221 kb on + strand at 789.221 kb on + strand at 789.221 kb on + strand at 789.221 kb on + strand at 789.222 kb on - strand at 789.222 kb on - strand at 789.222 kb on - strand at 789.222 kb on - strand at 789.225 kb on + strand at 789.225 kb on + strand at 789.225 kb on + strand at 789.225 kb on + strand at 789.226 kb on - strand at 789.226 kb on - strand at 789.226 kb on - strand at 789.226 kb on - strand at 789.226 kb on - strand at 789.226 kb on - strand at 789.330 kb on - strand at 789.330 kb on - strand at 789.449 kb on + strand, within Psest_0720 at 789.470 kb on + strand, within Psest_0720 at 789.471 kb on - strand, within Psest_0720 at 789.777 kb on + strand, within Psest_0720 at 789.777 kb on + strand, within Psest_0720 at 789.778 kb on - strand, within Psest_0720 at 789.778 kb on - strand, within Psest_0720 at 789.778 kb on - strand, within Psest_0720 at 789.778 kb on - strand, within Psest_0720 at 789.779 kb on + strand, within Psest_0720 at 789.779 kb on + strand, within Psest_0720 at 789.779 kb on + strand, within Psest_0720 at 789.779 kb on + strand, within Psest_0720 at 789.779 kb on + strand, within Psest_0720 at 789.779 kb on + strand, within Psest_0720 at 789.780 kb on - strand, within Psest_0720 at 789.780 kb on - strand, within Psest_0720 at 789.780 kb on - strand, within Psest_0720 at 789.780 kb on - strand, within Psest_0720 at 789.780 kb on - strand, within Psest_0720 at 789.816 kb on + strand, within Psest_0720
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 3 remove 788,291 + Psest_0718 0.58 -1.2 788,291 + Psest_0718 0.58 -0.5 788,305 + Psest_0718 0.59 -1.7 788,305 + Psest_0718 0.59 +1.3 788,306 - Psest_0718 0.59 -1.9 788,447 - Psest_0718 0.76 -0.2 788,582 + -3.9 788,582 + -2.2 788,582 + -1.3 788,582 + -1.2 788,582 + -2.9 788,582 + -2.1 788,582 + -1.8 788,582 + -1.4 788,582 + -4.1 788,582 + -1.9 788,582 + -4.0 788,582 + -1.7 788,582 + -1.9 788,582 + -0.9 788,582 + -2.5 788,583 - -2.2 788,583 - -2.7 788,583 - -2.1 788,583 - -0.4 788,583 - -0.9 788,583 - -3.8 788,583 - +0.8 788,583 - -2.1 788,583 - -0.3 788,583 - -2.2 788,583 - -0.5 788,583 - +0.5 788,583 - -1.7 788,583 - -0.6 788,583 - -3.3 788,583 - -0.8 788,583 - -1.1 788,583 - -1.6 788,583 - -1.2 788,584 + -2.1 788,584 + -0.9 788,584 + -2.6 788,584 + -2.1 788,584 + -0.4 788,584 + -0.1 788,584 + -3.5 788,584 + -1.8 788,585 - -0.2 788,585 - -1.1 788,585 - -1.6 788,585 - -2.4 788,585 - -0.6 788,585 - -0.6 788,585 - -0.7 788,585 - -3.8 788,585 - -2.3 788,585 - -1.9 788,629 - -2.0 788,900 + Psest_0719 0.47 +0.9 788,900 + Psest_0719 0.47 +0.3 788,922 + Psest_0719 0.52 -0.1 788,923 - Psest_0719 0.52 -1.0 788,923 - Psest_0719 0.52 +1.2 788,926 + Psest_0719 0.53 +0.4 788,926 + Psest_0719 0.53 -0.3 788,926 + Psest_0719 0.53 -0.8 788,988 + Psest_0719 0.67 -0.5 788,989 - Psest_0719 0.67 -1.5 788,989 - Psest_0719 0.67 -1.2 788,989 - Psest_0719 0.67 +0.2 788,989 - Psest_0719 0.67 +3.1 789,031 + Psest_0719 0.77 -0.1 789,032 - Psest_0719 0.77 -0.3 789,032 - Psest_0719 0.77 +0.4 789,143 + -0.0 789,143 + +0.1 789,143 + -0.9 789,143 + -1.4 789,144 - +0.3 789,144 - -0.9 789,144 - -0.8 789,144 - -1.0 789,144 - -0.7 789,144 - +0.4 789,145 + -1.5 789,145 + -0.5 789,145 + -0.3 789,146 - +0.9 789,146 - -0.4 789,146 - -0.4 789,146 - -0.4 789,147 + -0.7 789,147 + -0.7 789,147 + +1.2 789,147 + -1.2 789,147 + -1.6 789,147 + -0.1 789,147 + -0.2 789,148 - +0.5 789,148 - -0.5 789,148 - +0.1 789,148 - -0.1 789,148 - -0.8 789,148 - -0.3 789,148 - +0.1 789,148 - +0.1 789,148 - -3.0 789,148 - -0.6 789,148 - -0.4 789,161 + -1.0 789,161 + -0.8 789,161 + +0.2 789,161 + -3.0 789,161 + -2.1 789,161 + +1.3 789,161 + -0.3 789,161 + -0.2 789,162 - -0.6 789,162 - -0.3 789,162 - -0.2 789,162 - -0.6 789,162 - -0.2 789,162 - -0.4 789,162 - -0.4 789,162 - -1.1 789,162 - +0.2 789,162 - -0.2 789,176 + -1.9 789,187 + -0.4 789,188 - -0.6 789,188 - -0.4 789,188 - +0.1 789,188 - -2.6 789,188 - +0.1 789,188 - -1.8 789,188 - +0.3 789,221 + -0.9 789,221 + +0.3 789,221 + -0.8 789,221 + +0.4 789,221 + +0.7 789,221 + -0.2 789,221 + -1.0 789,221 + -1.9 789,221 + -1.1 789,221 + -2.1 789,222 - -2.1 789,222 - -0.7 789,222 - +0.0 789,222 - +0.3 789,225 + -0.2 789,225 + -1.2 789,225 + -1.7 789,225 + -0.7 789,226 - -0.7 789,226 - -0.1 789,226 - -1.2 789,226 - -1.0 789,226 - -0.2 789,226 - -0.3 789,330 - -2.4 789,330 - -0.5 789,449 + Psest_0720 0.29 -1.0 789,470 + Psest_0720 0.32 -0.9 789,471 - Psest_0720 0.32 -0.0 789,777 + Psest_0720 0.81 -1.0 789,777 + Psest_0720 0.81 +0.2 789,778 - Psest_0720 0.81 -3.4 789,778 - Psest_0720 0.81 -1.8 789,778 - Psest_0720 0.81 -0.8 789,778 - Psest_0720 0.81 -1.8 789,779 + Psest_0720 0.81 -1.6 789,779 + Psest_0720 0.81 -0.3 789,779 + Psest_0720 0.81 -0.7 789,779 + Psest_0720 0.81 -1.4 789,779 + Psest_0720 0.81 +1.4 789,779 + Psest_0720 0.81 +0.2 789,780 - Psest_0720 0.81 -0.1 789,780 - Psest_0720 0.81 -1.2 789,780 - Psest_0720 0.81 -0.4 789,780 - Psest_0720 0.81 -0.6 789,780 - Psest_0720 0.81 +0.1 789,816 + Psest_0720 0.87 -0.8
Or see this region's nucleotide sequence