Experiment: LB 30C timecourse1 timepoint 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0649 and Psest_0650 are separated by 196 nucleotides Psest_0650 and Psest_0651 are separated by 94 nucleotides Psest_0651 and Psest_0652 overlap by 7 nucleotides
Psest_0649: Psest_0649 - Glutamate decarboxylase and related PLP-dependent proteins, at 704,318 to 705,841
_0649
Psest_0650: Psest_0650 - RNA polymerase sigma factor, sigma-70 family, at 706,038 to 706,535
_0650
Psest_0651: Psest_0651 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 706,630 to 709,023
_0651
Psest_0652: Psest_0652 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 709,017 to 709,952
_0652
Position (kb) 706
707
708
709
710 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 706.040 kb on - strand at 706.089 kb on - strand, within Psest_0650 at 706.089 kb on - strand, within Psest_0650 at 706.200 kb on + strand, within Psest_0650 at 706.200 kb on + strand, within Psest_0650 at 706.200 kb on + strand, within Psest_0650 at 706.201 kb on - strand, within Psest_0650 at 706.351 kb on + strand, within Psest_0650 at 706.351 kb on + strand, within Psest_0650 at 706.352 kb on - strand, within Psest_0650 at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.493 kb on - strand at 706.493 kb on - strand at 706.493 kb on - strand at 706.493 kb on - strand at 706.568 kb on - strand at 706.712 kb on + strand at 706.712 kb on + strand at 706.715 kb on + strand at 706.715 kb on + strand at 706.715 kb on + strand at 706.715 kb on + strand at 706.716 kb on - strand at 706.822 kb on - strand at 706.922 kb on + strand, within Psest_0651 at 706.922 kb on + strand, within Psest_0651 at 706.922 kb on + strand, within Psest_0651 at 706.922 kb on + strand, within Psest_0651 at 706.922 kb on + strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.938 kb on - strand, within Psest_0651 at 707.086 kb on + strand, within Psest_0651 at 707.086 kb on + strand, within Psest_0651 at 707.357 kb on + strand, within Psest_0651 at 707.450 kb on + strand, within Psest_0651 at 707.451 kb on - strand, within Psest_0651 at 707.489 kb on + strand, within Psest_0651 at 707.489 kb on + strand, within Psest_0651 at 707.582 kb on + strand, within Psest_0651 at 707.582 kb on + strand, within Psest_0651 at 707.819 kb on + strand, within Psest_0651 at 707.819 kb on + strand, within Psest_0651 at 707.819 kb on + strand, within Psest_0651 at 707.820 kb on - strand, within Psest_0651 at 707.820 kb on - strand, within Psest_0651 at 707.820 kb on - strand, within Psest_0651 at 707.876 kb on + strand, within Psest_0651 at 707.876 kb on + strand, within Psest_0651 at 707.877 kb on - strand, within Psest_0651 at 707.877 kb on - strand, within Psest_0651 at 707.877 kb on - strand, within Psest_0651 at 707.877 kb on - strand, within Psest_0651 at 707.993 kb on + strand, within Psest_0651 at 708.142 kb on - strand, within Psest_0651 at 708.447 kb on - strand, within Psest_0651 at 708.503 kb on + strand, within Psest_0651 at 708.503 kb on + strand, within Psest_0651 at 708.504 kb on - strand, within Psest_0651 at 708.504 kb on - strand, within Psest_0651 at 708.552 kb on - strand, within Psest_0651 at 708.552 kb on - strand, within Psest_0651 at 708.552 kb on - strand, within Psest_0651 at 708.611 kb on + strand, within Psest_0651 at 708.611 kb on + strand, within Psest_0651 at 708.612 kb on - strand, within Psest_0651 at 709.003 kb on + strand at 709.093 kb on + strand at 709.093 kb on + strand at 709.093 kb on + strand at 709.093 kb on + strand at 709.093 kb on + strand at 709.093 kb on + strand at 709.093 kb on + strand at 709.094 kb on - strand at 709.094 kb on - strand at 709.094 kb on - strand at 709.094 kb on - strand at 709.094 kb on - strand at 709.094 kb on - strand at 709.094 kb on - strand at 709.094 kb on - strand at 709.265 kb on + strand, within Psest_0652 at 709.265 kb on + strand, within Psest_0652 at 709.661 kb on + strand, within Psest_0652 at 709.662 kb on - strand, within Psest_0652 at 709.768 kb on - strand, within Psest_0652 at 709.840 kb on + strand, within Psest_0652 at 709.852 kb on + strand, within Psest_0652 at 709.952 kb on + strand at 709.952 kb on + strand at 709.952 kb on + strand at 709.953 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 3 remove 706,040 - +0.5 706,089 - Psest_0650 0.10 +0.3 706,089 - Psest_0650 0.10 -1.7 706,200 + Psest_0650 0.33 -2.2 706,200 + Psest_0650 0.33 +1.1 706,200 + Psest_0650 0.33 -0.0 706,201 - Psest_0650 0.33 +1.1 706,351 + Psest_0650 0.63 -0.4 706,351 + Psest_0650 0.63 +0.1 706,352 - Psest_0650 0.63 -1.8 706,492 + -0.9 706,492 + +0.6 706,492 + -0.1 706,492 + -1.5 706,492 + -0.6 706,492 + +1.2 706,492 + +1.1 706,492 + +0.8 706,492 + -0.5 706,492 + -1.0 706,493 - +0.9 706,493 - -1.9 706,493 - +0.1 706,493 - +0.7 706,568 - +0.9 706,712 + +2.1 706,712 + +0.7 706,715 + +2.8 706,715 + -0.8 706,715 + -0.6 706,715 + +2.1 706,716 - -1.7 706,822 - +1.1 706,922 + Psest_0651 0.12 -1.2 706,922 + Psest_0651 0.12 +1.1 706,922 + Psest_0651 0.12 +1.1 706,922 + Psest_0651 0.12 +0.9 706,922 + Psest_0651 0.12 +1.1 706,923 - Psest_0651 0.12 -0.3 706,923 - Psest_0651 0.12 -0.1 706,923 - Psest_0651 0.12 +1.7 706,923 - Psest_0651 0.12 +0.2 706,923 - Psest_0651 0.12 +0.5 706,923 - Psest_0651 0.12 +0.5 706,923 - Psest_0651 0.12 +1.5 706,938 - Psest_0651 0.13 +1.1 707,086 + Psest_0651 0.19 -1.5 707,086 + Psest_0651 0.19 +0.9 707,357 + Psest_0651 0.30 +1.1 707,450 + Psest_0651 0.34 +1.7 707,451 - Psest_0651 0.34 -0.5 707,489 + Psest_0651 0.36 -0.8 707,489 + Psest_0651 0.36 -0.2 707,582 + Psest_0651 0.40 +0.4 707,582 + Psest_0651 0.40 -0.4 707,819 + Psest_0651 0.50 -0.9 707,819 + Psest_0651 0.50 +0.5 707,819 + Psest_0651 0.50 +1.2 707,820 - Psest_0651 0.50 +2.7 707,820 - Psest_0651 0.50 -0.0 707,820 - Psest_0651 0.50 +0.1 707,876 + Psest_0651 0.52 -0.1 707,876 + Psest_0651 0.52 +0.7 707,877 - Psest_0651 0.52 -0.5 707,877 - Psest_0651 0.52 -0.3 707,877 - Psest_0651 0.52 +1.1 707,877 - Psest_0651 0.52 +0.1 707,993 + Psest_0651 0.57 +0.5 708,142 - Psest_0651 0.63 +0.1 708,447 - Psest_0651 0.76 +0.6 708,503 + Psest_0651 0.78 +1.1 708,503 + Psest_0651 0.78 +2.0 708,504 - Psest_0651 0.78 +1.4 708,504 - Psest_0651 0.78 -0.1 708,552 - Psest_0651 0.80 -1.2 708,552 - Psest_0651 0.80 +0.7 708,552 - Psest_0651 0.80 -0.0 708,611 + Psest_0651 0.83 +0.1 708,611 + Psest_0651 0.83 +2.1 708,612 - Psest_0651 0.83 +1.1 709,003 + -0.6 709,093 + -0.5 709,093 + +1.4 709,093 + -0.7 709,093 + -0.2 709,093 + +0.1 709,093 + -0.5 709,093 + -0.2 709,094 - +1.1 709,094 - +0.2 709,094 - +0.1 709,094 - -0.4 709,094 - +0.1 709,094 - +0.1 709,094 - +0.1 709,094 - -0.2 709,265 + Psest_0652 0.26 +0.8 709,265 + Psest_0652 0.26 -0.2 709,661 + Psest_0652 0.69 +0.2 709,662 - Psest_0652 0.69 +1.1 709,768 - Psest_0652 0.80 +0.1 709,840 + Psest_0652 0.88 -0.1 709,852 + Psest_0652 0.89 -0.8 709,952 + -0.5 709,952 + +2.3 709,952 + -2.1 709,953 - -2.6
Or see this region's nucleotide sequence