Experiment: LB 30C timecourse1 timepoint 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0602 and Psest_0603 are separated by 116 nucleotides
Psest_0602: Psest_0602 - hypothetical protein, at 654,515 to 655,561
_0602
Psest_0603: Psest_0603 - hypothetical protein, at 655,678 to 656,121
_0603
Position (kb) 655
656
657 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 654.754 kb on + strand, within Psest_0602 at 654.774 kb on + strand, within Psest_0602 at 654.775 kb on - strand, within Psest_0602 at 654.794 kb on - strand, within Psest_0602 at 654.794 kb on - strand, within Psest_0602 at 654.794 kb on - strand, within Psest_0602 at 654.807 kb on + strand, within Psest_0602 at 654.857 kb on + strand, within Psest_0602 at 654.871 kb on + strand, within Psest_0602 at 654.874 kb on + strand, within Psest_0602 at 654.874 kb on + strand, within Psest_0602 at 654.875 kb on - strand, within Psest_0602 at 654.981 kb on + strand, within Psest_0602 at 654.981 kb on + strand, within Psest_0602 at 654.981 kb on + strand, within Psest_0602 at 654.989 kb on + strand, within Psest_0602 at 654.989 kb on + strand, within Psest_0602 at 654.990 kb on - strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.039 kb on - strand, within Psest_0602 at 655.039 kb on - strand, within Psest_0602 at 655.084 kb on + strand, within Psest_0602 at 655.101 kb on + strand, within Psest_0602 at 655.102 kb on - strand, within Psest_0602 at 655.114 kb on - strand, within Psest_0602 at 655.203 kb on - strand, within Psest_0602 at 655.279 kb on + strand, within Psest_0602 at 655.279 kb on + strand, within Psest_0602 at 655.360 kb on + strand, within Psest_0602 at 655.392 kb on + strand, within Psest_0602 at 655.392 kb on + strand, within Psest_0602 at 655.451 kb on - strand, within Psest_0602 at 655.483 kb on + strand at 655.486 kb on + strand at 655.509 kb on - strand at 655.546 kb on + strand at 655.567 kb on + strand at 655.568 kb on - strand at 655.626 kb on - strand at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.806 kb on + strand, within Psest_0603 at 655.806 kb on + strand, within Psest_0603 at 655.806 kb on + strand, within Psest_0603 at 655.807 kb on - strand, within Psest_0603 at 655.807 kb on - strand, within Psest_0603 at 655.807 kb on - strand, within Psest_0603 at 655.807 kb on - strand, within Psest_0603 at 655.828 kb on + strand, within Psest_0603 at 655.828 kb on + strand, within Psest_0603 at 655.858 kb on + strand, within Psest_0603 at 655.858 kb on + strand, within Psest_0603 at 655.868 kb on + strand, within Psest_0603 at 655.868 kb on + strand, within Psest_0603 at 655.869 kb on - strand, within Psest_0603 at 655.869 kb on - strand, within Psest_0603 at 656.049 kb on + strand, within Psest_0603 at 656.049 kb on + strand, within Psest_0603 at 656.066 kb on + strand, within Psest_0603 at 656.087 kb on + strand at 656.088 kb on - strand at 656.088 kb on - strand at 656.167 kb on - strand at 656.167 kb on - strand at 656.255 kb on + strand at 656.256 kb on - strand at 656.256 kb on - strand at 656.302 kb on + strand at 656.321 kb on + strand at 656.321 kb on + strand at 656.321 kb on + strand at 656.328 kb on + strand at 656.328 kb on + strand at 656.328 kb on + strand at 656.398 kb on + strand at 656.398 kb on + strand at 656.398 kb on + strand at 656.399 kb on - strand at 656.399 kb on - strand at 656.412 kb on + strand at 656.412 kb on + strand at 656.412 kb on + strand at 656.412 kb on + strand at 656.413 kb on - strand at 656.427 kb on - strand at 656.478 kb on + strand at 656.478 kb on + strand at 656.478 kb on + strand at 656.479 kb on - strand at 656.479 kb on - strand at 656.479 kb on - strand at 656.479 kb on - strand at 656.571 kb on - strand at 656.574 kb on + strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.651 kb on + strand at 656.652 kb on - strand at 656.652 kb on - strand at 656.688 kb on + strand at 656.689 kb on - strand at 656.703 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.743 kb on - strand at 656.743 kb on - strand at 656.743 kb on - strand at 656.817 kb on + strand at 656.818 kb on - strand at 656.818 kb on - strand at 656.876 kb on + strand at 656.876 kb on + strand at 656.876 kb on + strand at 656.877 kb on - strand at 656.877 kb on - strand at 656.877 kb on - strand at 656.877 kb on - strand at 656.904 kb on + strand at 656.964 kb on + strand at 656.964 kb on + strand at 656.964 kb on + strand at 656.964 kb on + strand at 656.964 kb on + strand at 656.965 kb on - strand at 656.965 kb on - strand at 656.965 kb on - strand at 656.965 kb on - strand at 656.965 kb on - strand at 656.965 kb on - strand at 656.965 kb on - strand at 657.031 kb on - strand at 657.031 kb on - strand at 657.081 kb on + strand at 657.081 kb on + strand at 657.081 kb on + strand at 657.081 kb on + strand at 657.081 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 3 remove 654,754 + Psest_0602 0.23 +3.3 654,774 + Psest_0602 0.25 +0.5 654,775 - Psest_0602 0.25 -0.8 654,794 - Psest_0602 0.27 -0.7 654,794 - Psest_0602 0.27 +0.8 654,794 - Psest_0602 0.27 +0.9 654,807 + Psest_0602 0.28 -0.3 654,857 + Psest_0602 0.33 -2.2 654,871 + Psest_0602 0.34 -0.4 654,874 + Psest_0602 0.34 -0.3 654,874 + Psest_0602 0.34 +0.9 654,875 - Psest_0602 0.34 +1.8 654,981 + Psest_0602 0.45 -0.7 654,981 + Psest_0602 0.45 +0.6 654,981 + Psest_0602 0.45 -1.6 654,989 + Psest_0602 0.45 -0.3 654,989 + Psest_0602 0.45 -1.9 654,990 - Psest_0602 0.45 +0.5 655,038 + Psest_0602 0.50 -2.4 655,038 + Psest_0602 0.50 -2.6 655,038 + Psest_0602 0.50 +0.7 655,038 + Psest_0602 0.50 -0.0 655,038 + Psest_0602 0.50 -1.2 655,039 - Psest_0602 0.50 +0.2 655,039 - Psest_0602 0.50 +0.2 655,084 + Psest_0602 0.54 +1.0 655,101 + Psest_0602 0.56 -0.5 655,102 - Psest_0602 0.56 +0.5 655,114 - Psest_0602 0.57 +1.2 655,203 - Psest_0602 0.66 -0.3 655,279 + Psest_0602 0.73 -1.1 655,279 + Psest_0602 0.73 -0.2 655,360 + Psest_0602 0.81 -0.9 655,392 + Psest_0602 0.84 -0.7 655,392 + Psest_0602 0.84 +0.4 655,451 - Psest_0602 0.89 +0.0 655,483 + +0.3 655,486 + +1.7 655,509 - +1.6 655,546 + +0.7 655,567 + -0.4 655,568 - +0.1 655,626 - -0.5 655,804 + Psest_0603 0.28 -1.1 655,804 + Psest_0603 0.28 +0.3 655,804 + Psest_0603 0.28 -1.2 655,804 + Psest_0603 0.28 -2.2 655,804 + Psest_0603 0.28 +0.2 655,804 + Psest_0603 0.28 -1.4 655,804 + Psest_0603 0.28 -0.7 655,804 + Psest_0603 0.28 +0.3 655,804 + Psest_0603 0.28 -0.8 655,804 + Psest_0603 0.28 -1.5 655,804 + Psest_0603 0.28 +0.2 655,804 + Psest_0603 0.28 -0.8 655,804 + Psest_0603 0.28 -0.5 655,805 - Psest_0603 0.29 -0.4 655,805 - Psest_0603 0.29 -0.3 655,805 - Psest_0603 0.29 +0.0 655,805 - Psest_0603 0.29 -1.2 655,805 - Psest_0603 0.29 +0.3 655,805 - Psest_0603 0.29 +0.1 655,805 - Psest_0603 0.29 +0.4 655,805 - Psest_0603 0.29 -0.5 655,805 - Psest_0603 0.29 -0.3 655,805 - Psest_0603 0.29 +0.2 655,805 - Psest_0603 0.29 -1.8 655,805 - Psest_0603 0.29 -0.6 655,805 - Psest_0603 0.29 -0.5 655,806 + Psest_0603 0.29 -0.6 655,806 + Psest_0603 0.29 +0.5 655,806 + Psest_0603 0.29 -1.0 655,807 - Psest_0603 0.29 +0.2 655,807 - Psest_0603 0.29 -0.1 655,807 - Psest_0603 0.29 -3.0 655,807 - Psest_0603 0.29 -0.1 655,828 + Psest_0603 0.34 -0.7 655,828 + Psest_0603 0.34 -0.3 655,858 + Psest_0603 0.41 -0.7 655,858 + Psest_0603 0.41 -0.2 655,868 + Psest_0603 0.43 -0.8 655,868 + Psest_0603 0.43 +0.6 655,869 - Psest_0603 0.43 +0.7 655,869 - Psest_0603 0.43 -1.5 656,049 + Psest_0603 0.84 -1.7 656,049 + Psest_0603 0.84 -0.6 656,066 + Psest_0603 0.87 -1.8 656,087 + +0.1 656,088 - -0.5 656,088 - -0.6 656,167 - -1.7 656,167 - -0.4 656,255 + -0.8 656,256 - -1.1 656,256 - -1.1 656,302 + -1.7 656,321 + +0.1 656,321 + -0.6 656,321 + -0.2 656,328 + -1.1 656,328 + -0.2 656,328 + +0.3 656,398 + +1.0 656,398 + -1.1 656,398 + -1.4 656,399 - +0.0 656,399 - -0.9 656,412 + -0.8 656,412 + -1.1 656,412 + -0.9 656,412 + -1.4 656,413 - -1.3 656,427 - +0.5 656,478 + -1.0 656,478 + -2.6 656,478 + -0.5 656,479 - -0.5 656,479 - +1.0 656,479 - -0.5 656,479 - -0.4 656,571 - -1.2 656,574 + -1.2 656,575 - -1.0 656,575 - -0.6 656,575 - -3.4 656,575 - -0.4 656,575 - -0.2 656,575 - -0.4 656,575 - -0.5 656,575 - -0.2 656,575 - -0.2 656,575 - +1.0 656,575 - -0.1 656,575 - -0.1 656,651 + -0.9 656,652 - +0.1 656,652 - +0.0 656,688 + +0.0 656,689 - -0.1 656,703 + -2.7 656,742 + -2.7 656,742 + -2.8 656,742 + -1.5 656,742 + -0.8 656,742 + -1.0 656,742 + +0.8 656,742 + -0.6 656,742 + -1.5 656,743 - -0.6 656,743 - +0.5 656,743 - -0.6 656,817 + +0.1 656,818 - -2.5 656,818 - -0.8 656,876 + -3.3 656,876 + -0.8 656,876 + +0.4 656,877 - +1.3 656,877 - -0.1 656,877 - -0.4 656,877 - +0.5 656,904 + -0.8 656,964 + +0.5 656,964 + -0.0 656,964 + -1.8 656,964 + -0.0 656,964 + -0.9 656,965 - -2.1 656,965 - +1.2 656,965 - +0.5 656,965 - -1.0 656,965 - -1.3 656,965 - -1.2 656,965 - -0.8 657,031 - -1.1 657,031 - -0.5 657,081 + +0.9 657,081 + +0.0 657,081 + -0.4 657,081 + -1.8 657,081 + +2.3
Or see this region's nucleotide sequence