Experiment: LB 30C timecourse1 timepoint 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0586 and Psest_0587 are separated by 478 nucleotides Psest_0587 and Psest_0588 are separated by 378 nucleotides
Psest_0586: Psest_0586 - hypothetical protein, at 636,642 to 637,451
_0586
Psest_0587: Psest_0587 - Domain of Unknown Function (DUF326)., at 637,930 to 638,259
_0587
Psest_0588: Psest_0588 - Short-chain dehydrogenases of various substrate specificities, at 638,638 to 639,363
_0588
Position (kb) 637
638
639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 636.975 kb on + strand, within Psest_0586 at 636.975 kb on + strand, within Psest_0586 at 636.975 kb on + strand, within Psest_0586 at 636.975 kb on + strand, within Psest_0586 at 636.976 kb on - strand, within Psest_0586 at 636.976 kb on - strand, within Psest_0586 at 636.976 kb on - strand, within Psest_0586 at 637.020 kb on - strand, within Psest_0586 at 637.047 kb on - strand, within Psest_0586 at 637.047 kb on - strand, within Psest_0586 at 637.065 kb on + strand, within Psest_0586 at 637.066 kb on - strand, within Psest_0586 at 637.066 kb on - strand, within Psest_0586 at 637.066 kb on - strand, within Psest_0586 at 637.066 kb on - strand, within Psest_0586 at 637.108 kb on + strand, within Psest_0586 at 637.108 kb on + strand, within Psest_0586 at 637.108 kb on + strand, within Psest_0586 at 637.109 kb on - strand, within Psest_0586 at 637.187 kb on + strand, within Psest_0586 at 637.188 kb on - strand, within Psest_0586 at 637.310 kb on + strand, within Psest_0586 at 637.310 kb on + strand, within Psest_0586 at 637.310 kb on + strand, within Psest_0586 at 637.310 kb on + strand, within Psest_0586 at 637.313 kb on + strand, within Psest_0586 at 637.449 kb on + strand at 637.449 kb on + strand at 637.459 kb on + strand at 637.460 kb on - strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.494 kb on - strand at 637.494 kb on - strand at 637.494 kb on - strand at 637.494 kb on - strand at 637.538 kb on + strand at 637.539 kb on - strand at 637.584 kb on - strand at 637.611 kb on + strand at 637.611 kb on + strand at 637.611 kb on + strand at 637.612 kb on - strand at 637.612 kb on - strand at 637.612 kb on - strand at 637.615 kb on + strand at 637.615 kb on + strand at 637.615 kb on + strand at 637.615 kb on + strand at 637.615 kb on + strand at 637.615 kb on + strand at 637.615 kb on + strand at 637.616 kb on - strand at 637.616 kb on - strand at 637.616 kb on - strand at 637.616 kb on - strand at 637.616 kb on - strand at 637.619 kb on + strand at 637.619 kb on + strand at 637.619 kb on + strand at 637.620 kb on - strand at 637.620 kb on - strand at 637.620 kb on - strand at 637.620 kb on - strand at 637.620 kb on - strand at 637.788 kb on + strand at 637.788 kb on + strand at 637.788 kb on + strand at 637.789 kb on - strand at 637.793 kb on + strand at 637.794 kb on - strand at 637.794 kb on - strand at 637.794 kb on - strand at 637.803 kb on + strand at 637.804 kb on - strand at 637.804 kb on - strand at 637.804 kb on - strand at 637.843 kb on + strand at 637.843 kb on + strand at 637.844 kb on - strand at 637.844 kb on - strand at 637.876 kb on + strand at 637.902 kb on + strand at 637.902 kb on + strand at 637.902 kb on + strand at 637.902 kb on + strand at 637.902 kb on + strand at 637.903 kb on - strand at 637.903 kb on - strand at 637.903 kb on - strand at 637.903 kb on - strand at 637.927 kb on + strand at 637.927 kb on + strand at 637.927 kb on + strand at 637.928 kb on - strand at 637.928 kb on - strand at 637.928 kb on - strand at 637.928 kb on - strand at 637.928 kb on - strand at 638.027 kb on + strand, within Psest_0587 at 638.117 kb on - strand, within Psest_0587 at 638.121 kb on + strand, within Psest_0587 at 638.122 kb on - strand, within Psest_0587 at 638.122 kb on - strand, within Psest_0587 at 638.122 kb on - strand, within Psest_0587 at 638.122 kb on - strand, within Psest_0587 at 638.289 kb on - strand at 638.444 kb on - strand at 638.469 kb on + strand at 638.470 kb on - strand at 638.470 kb on - strand at 638.470 kb on - strand at 638.470 kb on - strand at 638.503 kb on + strand at 638.651 kb on + strand at 638.681 kb on + strand at 638.681 kb on + strand at 638.681 kb on + strand at 638.682 kb on - strand at 638.684 kb on + strand at 638.894 kb on + strand, within Psest_0588 at 638.894 kb on + strand, within Psest_0588 at 638.895 kb on - strand, within Psest_0588 at 638.895 kb on - strand, within Psest_0588 at 638.895 kb on - strand, within Psest_0588 at 638.895 kb on - strand, within Psest_0588 at 639.009 kb on + strand, within Psest_0588 at 639.090 kb on + strand, within Psest_0588 at 639.091 kb on - strand, within Psest_0588 at 639.103 kb on + strand, within Psest_0588 at 639.103 kb on + strand, within Psest_0588 at 639.103 kb on + strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.185 kb on + strand, within Psest_0588 at 639.185 kb on + strand, within Psest_0588 at 639.186 kb on - strand, within Psest_0588 at 639.196 kb on + strand, within Psest_0588 at 639.197 kb on - strand, within Psest_0588 at 639.197 kb on - strand, within Psest_0588 at 639.233 kb on + strand, within Psest_0588 at 639.233 kb on + strand, within Psest_0588 at 639.234 kb on - strand, within Psest_0588 at 639.234 kb on - strand, within Psest_0588 at 639.234 kb on - strand, within Psest_0588 at 639.234 kb on - strand, within Psest_0588
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 3 remove 636,975 + Psest_0586 0.41 +0.8 636,975 + Psest_0586 0.41 +0.5 636,975 + Psest_0586 0.41 +0.4 636,975 + Psest_0586 0.41 -2.1 636,976 - Psest_0586 0.41 +0.5 636,976 - Psest_0586 0.41 -0.3 636,976 - Psest_0586 0.41 -0.4 637,020 - Psest_0586 0.47 -2.1 637,047 - Psest_0586 0.50 -1.1 637,047 - Psest_0586 0.50 +0.5 637,065 + Psest_0586 0.52 -0.7 637,066 - Psest_0586 0.52 +0.5 637,066 - Psest_0586 0.52 -0.5 637,066 - Psest_0586 0.52 -0.1 637,066 - Psest_0586 0.52 +0.4 637,108 + Psest_0586 0.58 +0.2 637,108 + Psest_0586 0.58 -0.2 637,108 + Psest_0586 0.58 +0.5 637,109 - Psest_0586 0.58 -0.5 637,187 + Psest_0586 0.67 -0.1 637,188 - Psest_0586 0.67 -0.7 637,310 + Psest_0586 0.82 -2.6 637,310 + Psest_0586 0.82 -1.8 637,310 + Psest_0586 0.82 -0.4 637,310 + Psest_0586 0.82 -2.8 637,313 + Psest_0586 0.83 +1.3 637,449 + -0.3 637,449 + -0.0 637,459 + +0.5 637,460 - -0.4 637,461 + -0.2 637,461 + +0.9 637,461 + -0.3 637,461 + +0.8 637,461 + +0.8 637,461 + +1.5 637,461 + +0.1 637,461 + +0.0 637,461 + -1.7 637,461 + -0.2 637,461 + -0.2 637,461 + -0.3 637,461 + -0.4 637,461 + -0.5 637,461 + -3.1 637,461 + -2.3 637,461 + -1.9 637,461 + -0.4 637,461 + -0.3 637,461 + -0.3 637,461 + -2.5 637,461 + -1.3 637,461 + -0.1 637,461 + +0.3 637,461 + -0.5 637,461 + -0.8 637,461 + -0.5 637,461 + -0.4 637,461 + +0.1 637,461 + -0.1 637,462 - -0.3 637,462 - -1.3 637,462 - +0.6 637,462 - -0.2 637,462 - -0.3 637,462 - -1.1 637,462 - -0.4 637,462 - +0.0 637,462 - +0.5 637,462 - -1.8 637,462 - +0.3 637,462 - +2.2 637,462 - -0.4 637,462 - -1.1 637,462 - -1.7 637,462 - +0.2 637,462 - -0.3 637,462 - -1.8 637,462 - -1.9 637,462 - -0.1 637,462 - -0.3 637,462 - -0.7 637,462 - -0.6 637,462 - +0.2 637,462 - -1.1 637,462 - -0.5 637,462 - -0.7 637,462 - +0.5 637,462 - -1.5 637,462 - -1.5 637,494 - +0.4 637,494 - -0.7 637,494 - -0.1 637,494 - +0.5 637,538 + +0.3 637,539 - -0.7 637,584 - +0.3 637,611 + -1.5 637,611 + +0.1 637,611 + -1.0 637,612 - +0.2 637,612 - -0.9 637,612 - -0.7 637,615 + +0.2 637,615 + +0.2 637,615 + -1.0 637,615 + +0.1 637,615 + +0.0 637,615 + +0.2 637,615 + -2.7 637,616 - +0.0 637,616 - -1.1 637,616 - -0.4 637,616 - -0.1 637,616 - -1.1 637,619 + -0.3 637,619 + -0.0 637,619 + -0.3 637,620 - -0.1 637,620 - -0.1 637,620 - +0.1 637,620 - -1.1 637,620 - -0.7 637,788 + +0.0 637,788 + -0.7 637,788 + +0.7 637,789 - -0.0 637,793 + +1.3 637,794 - +0.3 637,794 - -0.2 637,794 - -0.3 637,803 + +0.1 637,804 - -0.9 637,804 - -0.2 637,804 - -0.5 637,843 + -0.1 637,843 + -0.7 637,844 - -0.5 637,844 - +0.5 637,876 + -2.9 637,902 + -0.1 637,902 + -0.4 637,902 + -1.1 637,902 + -0.8 637,902 + -0.4 637,903 - -0.4 637,903 - +1.2 637,903 - +0.6 637,903 - -1.8 637,927 + -0.2 637,927 + +1.0 637,927 + +0.2 637,928 - +1.4 637,928 - +0.3 637,928 - +0.1 637,928 - +0.7 637,928 - +1.2 638,027 + Psest_0587 0.29 -0.1 638,117 - Psest_0587 0.57 -2.2 638,121 + Psest_0587 0.58 -0.4 638,122 - Psest_0587 0.58 -1.9 638,122 - Psest_0587 0.58 +0.5 638,122 - Psest_0587 0.58 -1.5 638,122 - Psest_0587 0.58 -0.7 638,289 - -0.5 638,444 - -1.5 638,469 + -2.6 638,470 - -0.9 638,470 - -0.3 638,470 - -2.4 638,470 - +0.0 638,503 + -0.6 638,651 + -0.7 638,681 + +0.3 638,681 + -0.1 638,681 + -0.9 638,682 - -0.4 638,684 + +0.8 638,894 + Psest_0588 0.35 -0.5 638,894 + Psest_0588 0.35 -0.6 638,895 - Psest_0588 0.35 -0.0 638,895 - Psest_0588 0.35 -1.6 638,895 - Psest_0588 0.35 -3.1 638,895 - Psest_0588 0.35 +0.0 639,009 + Psest_0588 0.51 -0.2 639,090 + Psest_0588 0.62 +1.1 639,091 - Psest_0588 0.62 +0.3 639,103 + Psest_0588 0.64 -0.5 639,103 + Psest_0588 0.64 +0.3 639,103 + Psest_0588 0.64 +0.2 639,104 - Psest_0588 0.64 +0.7 639,104 - Psest_0588 0.64 -0.2 639,104 - Psest_0588 0.64 +0.3 639,104 - Psest_0588 0.64 -1.9 639,104 - Psest_0588 0.64 -2.6 639,104 - Psest_0588 0.64 +0.0 639,104 - Psest_0588 0.64 +0.5 639,104 - Psest_0588 0.64 -0.4 639,104 - Psest_0588 0.64 +0.5 639,185 + Psest_0588 0.75 -0.9 639,185 + Psest_0588 0.75 -0.9 639,186 - Psest_0588 0.75 -0.2 639,196 + Psest_0588 0.77 -1.4 639,197 - Psest_0588 0.77 -1.8 639,197 - Psest_0588 0.77 +0.6 639,233 + Psest_0588 0.82 +0.4 639,233 + Psest_0588 0.82 -1.7 639,234 - Psest_0588 0.82 -0.8 639,234 - Psest_0588 0.82 -1.3 639,234 - Psest_0588 0.82 +0.4 639,234 - Psest_0588 0.82 -0.8
Or see this region's nucleotide sequence