Experiment: LB 30C timecourse1 timepoint 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0540 and Psest_0541 are separated by 523 nucleotides Psest_0541 and Psest_0542 are separated by 220 nucleotides
Psest_0540: Psest_0540 - Ion transport protein., at 594,795 to 595,637
_0540
Psest_0541: Psest_0541 - succinate CoA transferases, at 596,161 to 597,672
_0541
Psest_0542: Psest_0542 - AMP nucleosidase, at 597,893 to 599,368
_0542
Position (kb) 596
597
598 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.187 kb on - strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.644 kb on + strand at 595.644 kb on + strand at 595.644 kb on + strand at 595.644 kb on + strand at 595.644 kb on + strand at 595.645 kb on - strand at 595.697 kb on + strand at 595.720 kb on - strand at 595.929 kb on - strand at 595.931 kb on + strand at 595.931 kb on + strand at 595.931 kb on + strand at 595.932 kb on - strand at 595.932 kb on - strand at 595.932 kb on - strand at 595.932 kb on - strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.941 kb on + strand at 595.941 kb on + strand at 595.966 kb on + strand at 595.966 kb on + strand at 595.966 kb on + strand at 595.966 kb on + strand at 595.967 kb on - strand at 595.967 kb on - strand at 595.984 kb on + strand at 595.985 kb on - strand at 596.029 kb on + strand at 596.174 kb on + strand at 596.174 kb on + strand at 596.175 kb on - strand at 596.175 kb on - strand at 596.175 kb on - strand at 596.175 kb on - strand at 596.175 kb on - strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.482 kb on + strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.683 kb on + strand, within Psest_0541 at 596.684 kb on - strand, within Psest_0541 at 596.704 kb on + strand, within Psest_0541 at 596.704 kb on + strand, within Psest_0541 at 596.704 kb on + strand, within Psest_0541 at 596.704 kb on + strand, within Psest_0541 at 596.704 kb on + strand, within Psest_0541 at 596.704 kb on + strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.753 kb on - strand, within Psest_0541 at 596.753 kb on - strand, within Psest_0541 at 596.753 kb on - strand, within Psest_0541 at 597.158 kb on - strand, within Psest_0541 at 597.158 kb on - strand, within Psest_0541 at 597.158 kb on - strand, within Psest_0541 at 597.262 kb on + strand, within Psest_0541 at 597.262 kb on + strand, within Psest_0541 at 597.263 kb on - strand, within Psest_0541 at 597.263 kb on - strand, within Psest_0541 at 597.263 kb on - strand, within Psest_0541 at 597.348 kb on + strand, within Psest_0541 at 597.348 kb on + strand, within Psest_0541 at 597.348 kb on + strand, within Psest_0541 at 597.348 kb on + strand, within Psest_0541 at 597.349 kb on - strand, within Psest_0541 at 597.349 kb on - strand, within Psest_0541 at 597.349 kb on - strand, within Psest_0541 at 597.349 kb on - strand, within Psest_0541 at 597.469 kb on + strand, within Psest_0541 at 597.470 kb on - strand, within Psest_0541 at 597.470 kb on - strand, within Psest_0541 at 597.562 kb on + strand at 597.670 kb on + strand at 597.670 kb on + strand at 597.670 kb on + strand at 597.670 kb on + strand at 597.670 kb on + strand at 597.671 kb on - strand at 597.671 kb on - strand at 597.835 kb on + strand at 597.836 kb on - strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.865 kb on - strand at 597.865 kb on - strand at 597.877 kb on + strand at 597.888 kb on + strand at 598.010 kb on + strand at 598.011 kb on - strand at 598.011 kb on - strand at 598.015 kb on - strand at 598.083 kb on - strand, within Psest_0542 at 598.083 kb on - strand, within Psest_0542 at 598.122 kb on - strand, within Psest_0542 at 598.148 kb on + strand, within Psest_0542 at 598.148 kb on + strand, within Psest_0542 at 598.275 kb on - strand, within Psest_0542 at 598.275 kb on - strand, within Psest_0542 at 598.275 kb on - strand, within Psest_0542 at 598.275 kb on - strand, within Psest_0542 at 598.375 kb on + strand, within Psest_0542 at 598.392 kb on - strand, within Psest_0542 at 598.475 kb on + strand, within Psest_0542 at 598.475 kb on + strand, within Psest_0542 at 598.475 kb on + strand, within Psest_0542 at 598.476 kb on - strand, within Psest_0542 at 598.476 kb on - strand, within Psest_0542 at 598.500 kb on + strand, within Psest_0542 at 598.500 kb on + strand, within Psest_0542 at 598.500 kb on + strand, within Psest_0542 at 598.501 kb on - strand, within Psest_0542 at 598.501 kb on - strand, within Psest_0542 at 598.526 kb on + strand, within Psest_0542 at 598.526 kb on + strand, within Psest_0542 at 598.527 kb on - strand, within Psest_0542 at 598.527 kb on - strand, within Psest_0542
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 3 remove 595,186 + Psest_0540 0.46 +1.6 595,186 + Psest_0540 0.46 +0.7 595,186 + Psest_0540 0.46 +0.1 595,186 + Psest_0540 0.46 -0.5 595,186 + Psest_0540 0.46 +1.1 595,186 + Psest_0540 0.46 -0.9 595,186 + Psest_0540 0.46 +1.1 595,187 - Psest_0540 0.47 +0.8 595,417 + Psest_0540 0.74 -0.9 595,417 + Psest_0540 0.74 +2.7 595,417 + Psest_0540 0.74 +0.7 595,417 + Psest_0540 0.74 -1.2 595,417 + Psest_0540 0.74 -0.5 595,417 + Psest_0540 0.74 +1.5 595,418 - Psest_0540 0.74 +0.4 595,418 - Psest_0540 0.74 +0.1 595,418 - Psest_0540 0.74 -1.5 595,418 - Psest_0540 0.74 +1.4 595,418 - Psest_0540 0.74 -0.5 595,418 - Psest_0540 0.74 +1.7 595,418 - Psest_0540 0.74 +0.6 595,418 - Psest_0540 0.74 -0.5 595,418 - Psest_0540 0.74 -1.2 595,418 - Psest_0540 0.74 -0.6 595,418 - Psest_0540 0.74 -0.7 595,644 + -1.2 595,644 + +1.6 595,644 + +0.6 595,644 + -0.5 595,644 + +0.1 595,645 - -0.5 595,697 + +0.4 595,720 - +0.3 595,929 - -2.3 595,931 + +0.1 595,931 + +1.1 595,931 + +0.7 595,932 - -0.2 595,932 - +0.6 595,932 - +0.6 595,932 - +0.1 595,939 + +1.1 595,939 + +1.0 595,939 + +0.7 595,939 + +0.5 595,939 + -2.2 595,939 + +0.3 595,939 + +0.5 595,939 + -1.5 595,939 + -0.3 595,940 - +1.1 595,940 - +0.5 595,940 - -0.9 595,940 - -0.6 595,940 - -0.3 595,940 - +0.9 595,940 - +2.7 595,940 - +1.3 595,940 - -0.9 595,940 - -0.5 595,940 - +0.1 595,940 - -0.0 595,940 - -0.7 595,941 + +0.1 595,941 + +0.1 595,966 + +0.1 595,966 + +0.4 595,966 + +1.1 595,966 + -1.6 595,967 - +0.3 595,967 - +0.4 595,984 + -0.4 595,985 - -1.7 596,029 + -0.7 596,174 + +2.9 596,174 + +0.1 596,175 - -0.2 596,175 - +0.5 596,175 - +2.1 596,175 - +3.1 596,175 - +1.0 596,182 + +0.0 596,182 + +1.1 596,182 + -0.9 596,182 + -0.2 596,182 + +2.0 596,182 + +1.1 596,182 + -0.2 596,182 + -0.7 596,182 + +0.5 596,182 + -0.9 596,182 + -1.2 596,183 - +0.2 596,183 - -0.4 596,183 - +0.1 596,183 - +0.7 596,183 - -0.7 596,183 - -1.0 596,183 - +1.4 596,183 - -0.5 596,183 - +0.4 596,482 + Psest_0541 0.21 -0.5 596,483 - Psest_0541 0.21 +0.8 596,483 - Psest_0541 0.21 +2.1 596,483 - Psest_0541 0.21 +0.8 596,483 - Psest_0541 0.21 +1.1 596,483 - Psest_0541 0.21 -0.3 596,483 - Psest_0541 0.21 +1.8 596,483 - Psest_0541 0.21 -1.2 596,483 - Psest_0541 0.21 +3.5 596,683 + Psest_0541 0.35 +1.7 596,684 - Psest_0541 0.35 +0.9 596,704 + Psest_0541 0.36 +0.5 596,704 + Psest_0541 0.36 +0.0 596,704 + Psest_0541 0.36 -0.1 596,704 + Psest_0541 0.36 +0.8 596,704 + Psest_0541 0.36 -0.5 596,704 + Psest_0541 0.36 -0.3 596,705 - Psest_0541 0.36 -0.7 596,705 - Psest_0541 0.36 -0.3 596,705 - Psest_0541 0.36 +0.5 596,705 - Psest_0541 0.36 -1.9 596,705 - Psest_0541 0.36 +0.1 596,705 - Psest_0541 0.36 -0.1 596,705 - Psest_0541 0.36 -1.5 596,705 - Psest_0541 0.36 +1.5 596,705 - Psest_0541 0.36 +0.5 596,705 - Psest_0541 0.36 -0.2 596,753 - Psest_0541 0.39 +1.9 596,753 - Psest_0541 0.39 +0.1 596,753 - Psest_0541 0.39 +0.4 597,158 - Psest_0541 0.66 +0.1 597,158 - Psest_0541 0.66 +3.1 597,158 - Psest_0541 0.66 -0.1 597,262 + Psest_0541 0.73 +0.1 597,262 + Psest_0541 0.73 +1.3 597,263 - Psest_0541 0.73 -0.5 597,263 - Psest_0541 0.73 +0.1 597,263 - Psest_0541 0.73 -1.6 597,348 + Psest_0541 0.79 +0.3 597,348 + Psest_0541 0.79 +0.1 597,348 + Psest_0541 0.79 -0.9 597,348 + Psest_0541 0.79 +0.8 597,349 - Psest_0541 0.79 +1.8 597,349 - Psest_0541 0.79 +0.6 597,349 - Psest_0541 0.79 +1.3 597,349 - Psest_0541 0.79 -0.5 597,469 + Psest_0541 0.87 +0.1 597,470 - Psest_0541 0.87 +0.4 597,470 - Psest_0541 0.87 +2.0 597,562 + +0.7 597,670 + -0.1 597,670 + +1.5 597,670 + +1.3 597,670 + -1.3 597,670 + -0.5 597,671 - +1.1 597,671 - +1.1 597,835 + -1.6 597,836 - +1.0 597,837 + +1.9 597,837 + +0.8 597,837 + -2.6 597,837 + -0.7 597,837 + +1.5 597,837 + -0.5 597,837 + -0.0 597,837 + +0.3 597,837 + +0.1 597,838 - -0.7 597,838 - -2.5 597,838 - -1.2 597,838 - -0.5 597,838 - +2.9 597,838 - +0.2 597,838 - +1.1 597,838 - +0.4 597,865 - +0.9 597,865 - -1.8 597,877 + -0.2 597,888 + +0.1 598,010 + +0.5 598,011 - +2.3 598,011 - +1.0 598,015 - -0.5 598,083 - Psest_0542 0.13 -0.5 598,083 - Psest_0542 0.13 +0.9 598,122 - Psest_0542 0.16 -0.9 598,148 + Psest_0542 0.17 +0.4 598,148 + Psest_0542 0.17 +3.1 598,275 - Psest_0542 0.26 -0.5 598,275 - Psest_0542 0.26 -0.3 598,275 - Psest_0542 0.26 +2.5 598,275 - Psest_0542 0.26 +0.0 598,375 + Psest_0542 0.33 -0.3 598,392 - Psest_0542 0.34 +1.6 598,475 + Psest_0542 0.39 +1.1 598,475 + Psest_0542 0.39 +1.7 598,475 + Psest_0542 0.39 +1.3 598,476 - Psest_0542 0.39 -0.6 598,476 - Psest_0542 0.39 +0.4 598,500 + Psest_0542 0.41 -0.9 598,500 + Psest_0542 0.41 +1.1 598,500 + Psest_0542 0.41 +1.9 598,501 - Psest_0542 0.41 +0.5 598,501 - Psest_0542 0.41 -1.1 598,526 + Psest_0542 0.43 -0.2 598,526 + Psest_0542 0.43 +0.4 598,527 - Psest_0542 0.43 +0.1 598,527 - Psest_0542 0.43 -1.7
Or see this region's nucleotide sequence