Experiment: LB 30C timecourse1 timepoint 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0423 and Psest_0424 overlap by 8 nucleotides
Psest_0423: Psest_0423 - hypothetical protein, at 459,051 to 461,111
_0423
Psest_0424: Psest_0424 - Phage integrase family., at 461,104 to 462,975
_0424
Position (kb) 461
462
463 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 460.128 kb on + strand, within Psest_0423 at 460.131 kb on + strand, within Psest_0423 at 460.132 kb on - strand, within Psest_0423 at 460.149 kb on - strand, within Psest_0423 at 460.189 kb on + strand, within Psest_0423 at 460.320 kb on - strand, within Psest_0423 at 460.349 kb on + strand, within Psest_0423 at 460.419 kb on - strand, within Psest_0423 at 460.539 kb on + strand, within Psest_0423 at 460.540 kb on - strand, within Psest_0423 at 460.543 kb on + strand, within Psest_0423 at 460.543 kb on + strand, within Psest_0423 at 460.543 kb on + strand, within Psest_0423 at 460.563 kb on + strand, within Psest_0423 at 460.563 kb on + strand, within Psest_0423 at 460.564 kb on - strand, within Psest_0423 at 460.740 kb on - strand, within Psest_0423 at 460.822 kb on + strand, within Psest_0423 at 460.822 kb on + strand, within Psest_0423 at 460.822 kb on + strand, within Psest_0423 at 460.822 kb on + strand, within Psest_0423 at 460.823 kb on - strand, within Psest_0423 at 460.823 kb on - strand, within Psest_0423 at 460.823 kb on - strand, within Psest_0423 at 460.823 kb on - strand, within Psest_0423 at 460.832 kb on + strand, within Psest_0423 at 460.871 kb on - strand, within Psest_0423 at 460.941 kb on - strand at 460.998 kb on + strand at 461.448 kb on + strand, within Psest_0424 at 461.598 kb on + strand, within Psest_0424 at 461.613 kb on + strand, within Psest_0424 at 461.664 kb on + strand, within Psest_0424 at 461.679 kb on + strand, within Psest_0424 at 461.744 kb on + strand, within Psest_0424 at 461.823 kb on - strand, within Psest_0424 at 461.869 kb on + strand, within Psest_0424 at 461.870 kb on - strand, within Psest_0424 at 461.919 kb on + strand, within Psest_0424 at 461.963 kb on - strand, within Psest_0424 at 461.987 kb on + strand, within Psest_0424 at 462.075 kb on + strand, within Psest_0424 at 462.075 kb on + strand, within Psest_0424 at 462.261 kb on + strand, within Psest_0424 at 462.262 kb on - strand, within Psest_0424 at 462.432 kb on + strand, within Psest_0424 at 462.600 kb on + strand, within Psest_0424 at 462.636 kb on + strand, within Psest_0424 at 462.636 kb on + strand, within Psest_0424 at 462.648 kb on + strand, within Psest_0424 at 462.648 kb on + strand, within Psest_0424 at 462.669 kb on + strand, within Psest_0424 at 462.692 kb on + strand, within Psest_0424 at 462.692 kb on + strand, within Psest_0424 at 462.735 kb on + strand, within Psest_0424 at 462.825 kb on + strand at 462.850 kb on - strand at 463.103 kb on + strand at 463.103 kb on + strand at 463.195 kb on + strand at 463.340 kb on + strand at 463.340 kb on + strand at 463.361 kb on + strand at 463.361 kb on + strand at 463.363 kb on + strand at 463.453 kb on + strand at 463.497 kb on + strand at 463.570 kb on + strand at 463.570 kb on + strand at 463.570 kb on + strand at 463.746 kb on + strand at 463.796 kb on + strand at 463.797 kb on - strand at 463.836 kb on + strand at 463.852 kb on + strand at 463.852 kb on + strand at 463.853 kb on - strand at 463.867 kb on - strand at 463.867 kb on - strand at 463.867 kb on - strand at 463.867 kb on - strand at 463.867 kb on - strand at 463.867 kb on - strand at 463.867 kb on - strand at 463.867 kb on - strand at 463.867 kb on - strand at 463.867 kb on - strand at 463.867 kb on - strand at 463.871 kb on - strand at 463.871 kb on - strand at 463.871 kb on - strand at 463.941 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 3 remove 460,128 + Psest_0423 0.52 -0.1 460,131 + Psest_0423 0.52 -0.6 460,132 - Psest_0423 0.52 -1.2 460,149 - Psest_0423 0.53 -3.0 460,189 + Psest_0423 0.55 +3.1 460,320 - Psest_0423 0.62 -0.8 460,349 + Psest_0423 0.63 -2.0 460,419 - Psest_0423 0.66 +0.2 460,539 + Psest_0423 0.72 -1.9 460,540 - Psest_0423 0.72 -1.2 460,543 + Psest_0423 0.72 -1.8 460,543 + Psest_0423 0.72 -1.0 460,543 + Psest_0423 0.72 -0.3 460,563 + Psest_0423 0.73 +1.0 460,563 + Psest_0423 0.73 -1.9 460,564 - Psest_0423 0.73 +0.3 460,740 - Psest_0423 0.82 +0.2 460,822 + Psest_0423 0.86 +0.7 460,822 + Psest_0423 0.86 -0.7 460,822 + Psest_0423 0.86 -0.4 460,822 + Psest_0423 0.86 -1.6 460,823 - Psest_0423 0.86 +0.1 460,823 - Psest_0423 0.86 -0.2 460,823 - Psest_0423 0.86 +0.1 460,823 - Psest_0423 0.86 -1.2 460,832 + Psest_0423 0.86 -0.4 460,871 - Psest_0423 0.88 -0.3 460,941 - -0.2 460,998 + +0.2 461,448 + Psest_0424 0.18 -0.6 461,598 + Psest_0424 0.26 -1.4 461,613 + Psest_0424 0.27 -0.3 461,664 + Psest_0424 0.30 -1.0 461,679 + Psest_0424 0.31 -0.9 461,744 + Psest_0424 0.34 +0.5 461,823 - Psest_0424 0.38 -1.0 461,869 + Psest_0424 0.41 -1.9 461,870 - Psest_0424 0.41 -1.5 461,919 + Psest_0424 0.44 -1.1 461,963 - Psest_0424 0.46 -1.8 461,987 + Psest_0424 0.47 -0.3 462,075 + Psest_0424 0.52 +0.0 462,075 + Psest_0424 0.52 -1.1 462,261 + Psest_0424 0.62 -0.1 462,262 - Psest_0424 0.62 -0.7 462,432 + Psest_0424 0.71 -1.7 462,600 + Psest_0424 0.80 -2.1 462,636 + Psest_0424 0.82 -0.9 462,636 + Psest_0424 0.82 +0.2 462,648 + Psest_0424 0.82 -0.3 462,648 + Psest_0424 0.82 -0.0 462,669 + Psest_0424 0.84 -0.3 462,692 + Psest_0424 0.85 -1.2 462,692 + Psest_0424 0.85 -3.0 462,735 + Psest_0424 0.87 -1.0 462,825 + +0.2 462,850 - -1.4 463,103 + +1.3 463,103 + -0.0 463,195 + -0.9 463,340 + +0.1 463,340 + +2.0 463,361 + +0.2 463,361 + -0.1 463,363 + -0.5 463,453 + -1.5 463,497 + -2.9 463,570 + -0.9 463,570 + +0.1 463,570 + -0.6 463,746 + +0.2 463,796 + -0.3 463,797 - -0.4 463,836 + -1.2 463,852 + -0.6 463,852 + -1.8 463,853 - -0.1 463,867 - -1.5 463,867 - +0.3 463,867 - -0.1 463,867 - -0.5 463,867 - +0.2 463,867 - +0.7 463,867 - +0.6 463,867 - -0.8 463,867 - +0.5 463,867 - +1.1 463,867 - +1.0 463,871 - -0.7 463,871 - +0.7 463,871 - -0.3 463,941 + -0.8
Or see this region's nucleotide sequence