Experiment: LB 30C timecourse1 timepoint 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4145 and Psest_4146 are separated by 8 nucleotides Psest_4146 and Psest_4147 are separated by 12 nucleotides Psest_4147 and Psest_4148 overlap by 1 nucleotides
Psest_4145: Psest_4145 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 4,328,716 to 4,329,828
_4145
Psest_4146: Psest_4146 - Flagellar basal-body P-ring protein, at 4,329,837 to 4,330,949
_4146
Psest_4147: Psest_4147 - Flagellar basal body L-ring protein, at 4,330,962 to 4,331,630
_4147
Psest_4148: Psest_4148 - flagellar basal-body rod protein FlgG, Gram-negative bacteria, at 4,331,630 to 4,332,415
_4148
Position (kb) 4329
4330
4331 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4329.144 kb on - strand, within Psest_4145 at 4329.200 kb on + strand, within Psest_4145 at 4329.224 kb on + strand, within Psest_4145 at 4329.224 kb on + strand, within Psest_4145 at 4329.225 kb on - strand, within Psest_4145 at 4329.225 kb on - strand, within Psest_4145 at 4329.614 kb on + strand, within Psest_4145 at 4329.614 kb on + strand, within Psest_4145 at 4329.615 kb on - strand, within Psest_4145 at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.839 kb on - strand at 4330.312 kb on + strand, within Psest_4146 at 4330.312 kb on + strand, within Psest_4146 at 4330.313 kb on - strand, within Psest_4146 at 4330.313 kb on - strand, within Psest_4146 at 4330.313 kb on - strand, within Psest_4146 at 4330.534 kb on + strand, within Psest_4146 at 4330.534 kb on + strand, within Psest_4146 at 4330.535 kb on - strand, within Psest_4146 at 4330.535 kb on - strand, within Psest_4146 at 4330.645 kb on + strand, within Psest_4146 at 4330.646 kb on - strand, within Psest_4146 at 4330.646 kb on - strand, within Psest_4146 at 4330.646 kb on - strand, within Psest_4146 at 4331.089 kb on + strand, within Psest_4147 at 4331.134 kb on + strand, within Psest_4147 at 4331.134 kb on + strand, within Psest_4147 at 4331.134 kb on + strand, within Psest_4147 at 4331.135 kb on - strand, within Psest_4147 at 4331.135 kb on - strand, within Psest_4147 at 4331.135 kb on - strand, within Psest_4147 at 4331.135 kb on - strand, within Psest_4147 at 4331.135 kb on - strand, within Psest_4147 at 4331.513 kb on - strand, within Psest_4147 at 4331.513 kb on - strand, within Psest_4147 at 4331.534 kb on - strand, within Psest_4147 at 4331.534 kb on - strand, within Psest_4147 at 4331.534 kb on - strand, within Psest_4147 at 4331.697 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 3 remove 4,329,144 - Psest_4145 0.38 +0.2 4,329,200 + Psest_4145 0.43 +3.0 4,329,224 + Psest_4145 0.46 +3.0 4,329,224 + Psest_4145 0.46 +3.0 4,329,225 - Psest_4145 0.46 -0.6 4,329,225 - Psest_4145 0.46 -1.8 4,329,614 + Psest_4145 0.81 +0.3 4,329,614 + Psest_4145 0.81 -1.0 4,329,615 - Psest_4145 0.81 -0.0 4,329,838 + -1.3 4,329,838 + +1.1 4,329,838 + -0.0 4,329,838 + +0.3 4,329,838 + +1.0 4,329,838 + -0.0 4,329,838 + -1.5 4,329,838 + -0.0 4,329,839 - +1.0 4,330,312 + Psest_4146 0.43 -0.2 4,330,312 + Psest_4146 0.43 -0.1 4,330,313 - Psest_4146 0.43 +1.0 4,330,313 - Psest_4146 0.43 +2.0 4,330,313 - Psest_4146 0.43 +2.0 4,330,534 + Psest_4146 0.63 -0.2 4,330,534 + Psest_4146 0.63 +0.2 4,330,535 - Psest_4146 0.63 +0.7 4,330,535 - Psest_4146 0.63 -0.6 4,330,645 + Psest_4146 0.73 +0.8 4,330,646 - Psest_4146 0.73 -0.2 4,330,646 - Psest_4146 0.73 -0.4 4,330,646 - Psest_4146 0.73 +1.0 4,331,089 + Psest_4147 0.19 -0.2 4,331,134 + Psest_4147 0.26 -0.6 4,331,134 + Psest_4147 0.26 -0.1 4,331,134 + Psest_4147 0.26 +0.5 4,331,135 - Psest_4147 0.26 -1.0 4,331,135 - Psest_4147 0.26 -1.0 4,331,135 - Psest_4147 0.26 -0.6 4,331,135 - Psest_4147 0.26 +1.0 4,331,135 - Psest_4147 0.26 +0.5 4,331,513 - Psest_4147 0.82 +1.4 4,331,513 - Psest_4147 0.82 -1.0 4,331,534 - Psest_4147 0.86 -1.3 4,331,534 - Psest_4147 0.86 -0.6 4,331,534 - Psest_4147 0.86 +0.5 4,331,697 + -1.8
Or see this region's nucleotide sequence