Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03780 and PGA1_c03790 are separated by 212 nucleotides PGA1_c03790 and PGA1_c03800 are separated by 507 nucleotides
PGA1_c03780: PGA1_c03780 - succinate dehydrogenase iron-sulfur subunit, at 363,120 to 363,899
_c03780
PGA1_c03790: PGA1_c03790 - hypothetical protein, at 364,112 to 364,303
_c03790
PGA1_c03800: PGA1_c03800 - putative lysine/ornithine decarboxylase, at 364,811 to 365,992
_c03800
Position (kb) 364
365 Strain fitness (log2 ratio) -2
-1
0
1 at 363.906 kb on - strand at 363.928 kb on - strand at 363.933 kb on + strand at 363.933 kb on + strand at 363.970 kb on + strand at 364.001 kb on + strand at 364.006 kb on + strand at 364.083 kb on - strand at 364.109 kb on + strand at 364.175 kb on - strand, within PGA1_c03790 at 364.176 kb on - strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.219 kb on + strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.292 kb on + strand at 364.350 kb on - strand at 364.441 kb on - strand at 364.441 kb on - strand at 364.483 kb on - strand at 364.488 kb on + strand at 364.488 kb on - strand at 364.488 kb on - strand at 364.528 kb on - strand at 364.598 kb on + strand at 364.601 kb on - strand at 364.606 kb on - strand at 364.677 kb on + strand at 364.724 kb on + strand at 364.731 kb on + strand at 364.733 kb on - strand at 364.882 kb on + strand at 364.882 kb on + strand at 364.882 kb on + strand at 364.882 kb on + strand at 364.890 kb on - strand at 364.890 kb on - strand at 364.890 kb on - strand at 364.901 kb on + strand at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.978 kb on - strand, within PGA1_c03800 at 364.978 kb on - strand, within PGA1_c03800 at 364.978 kb on - strand, within PGA1_c03800 at 364.978 kb on - strand, within PGA1_c03800 at 364.978 kb on - strand, within PGA1_c03800 at 365.008 kb on - strand, within PGA1_c03800 at 365.041 kb on - strand, within PGA1_c03800 at 365.129 kb on + strand, within PGA1_c03800 at 365.215 kb on + strand, within PGA1_c03800 at 365.248 kb on + strand, within PGA1_c03800
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 363,906 - -0.7 363,928 - -0.5 363,933 + +0.0 363,933 + -0.2 363,970 + -0.1 364,001 + -0.9 364,006 + -1.6 364,083 - -0.6 364,109 + +0.3 364,175 - PGA1_c03790 0.33 -1.3 364,176 - PGA1_c03790 0.33 -0.0 364,213 + PGA1_c03790 0.53 -0.0 364,213 + PGA1_c03790 0.53 +0.4 364,213 + PGA1_c03790 0.53 -0.1 364,213 + PGA1_c03790 0.53 -0.4 364,213 + PGA1_c03790 0.53 -1.8 364,213 + PGA1_c03790 0.53 -0.0 364,213 + PGA1_c03790 0.53 -0.4 364,213 + PGA1_c03790 0.53 -0.7 364,219 + PGA1_c03790 0.56 +0.4 364,221 - PGA1_c03790 0.57 -2.1 364,221 - PGA1_c03790 0.57 +0.5 364,221 - PGA1_c03790 0.57 +0.6 364,221 - PGA1_c03790 0.57 -1.4 364,221 - PGA1_c03790 0.57 -0.3 364,221 - PGA1_c03790 0.57 -1.2 364,221 - PGA1_c03790 0.57 +0.2 364,221 - PGA1_c03790 0.57 -0.2 364,292 + -0.5 364,350 - -2.2 364,441 - -0.3 364,441 - -1.9 364,483 - +0.2 364,488 + -1.0 364,488 - -0.1 364,488 - -0.6 364,528 - +0.0 364,598 + -1.1 364,601 - -0.6 364,606 - -1.4 364,677 + -0.5 364,724 + -0.9 364,731 + -0.4 364,733 - -1.4 364,882 + -0.2 364,882 + -0.5 364,882 + +0.1 364,882 + +0.3 364,890 - -1.2 364,890 - +0.2 364,890 - +0.2 364,901 + -1.9 364,970 + PGA1_c03800 0.13 -0.8 364,970 + PGA1_c03800 0.13 -0.1 364,970 + PGA1_c03800 0.13 -0.3 364,970 + PGA1_c03800 0.13 -1.8 364,970 + PGA1_c03800 0.13 -0.6 364,970 + PGA1_c03800 0.13 -0.1 364,970 + PGA1_c03800 0.13 -0.4 364,970 + PGA1_c03800 0.13 -1.2 364,970 + PGA1_c03800 0.13 -0.7 364,970 + PGA1_c03800 0.13 -0.9 364,970 + PGA1_c03800 0.13 -1.2 364,970 + PGA1_c03800 0.13 -1.1 364,970 + PGA1_c03800 0.13 -0.8 364,970 + PGA1_c03800 0.13 -0.2 364,978 - PGA1_c03800 0.14 +0.2 364,978 - PGA1_c03800 0.14 +0.3 364,978 - PGA1_c03800 0.14 +0.0 364,978 - PGA1_c03800 0.14 -0.7 364,978 - PGA1_c03800 0.14 +0.1 365,008 - PGA1_c03800 0.17 -0.4 365,041 - PGA1_c03800 0.19 -0.9 365,129 + PGA1_c03800 0.27 -1.2 365,215 + PGA1_c03800 0.34 -1.4 365,248 + PGA1_c03800 0.37 +0.3
Or see this region's nucleotide sequence