Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3636
Experiment: LB 30C timecourse1 timepoint 3
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB 30C timecourse1 timepoint 3 |
---|---|---|---|---|---|
remove | |||||
3,797,605 | - | -1.2 | |||
3,797,605 | - | -3.0 | |||
3,797,607 | - | +0.6 | |||
3,797,607 | - | -0.3 | |||
3,797,607 | - | -0.3 | |||
3,797,613 | - | -0.5 | |||
3,797,632 | - | -1.3 | |||
3,797,632 | - | -2.0 | |||
3,797,632 | - | -1.3 | |||
3,797,715 | + | -1.8 | |||
3,797,730 | + | +0.5 | |||
3,799,186 | + | -1.8 | |||
3,799,248 | + | -2.7 | |||
3,799,378 | - | Psest_3637 | 0.18 | -0.5 | |
3,799,406 | + | Psest_3637 | 0.21 | -2.1 | |
3,799,833 | - | Psest_3637 | 0.60 | -1.0 | |
3,799,943 | + | Psest_3637 | 0.70 | -1.8 | |
3,799,943 | + | Psest_3637 | 0.70 | -1.8 | |
3,799,944 | - | Psest_3637 | 0.70 | -1.5 | |
3,799,944 | - | Psest_3637 | 0.70 | -1.0 | |
3,799,944 | - | Psest_3637 | 0.70 | -1.0 | |
3,799,944 | - | Psest_3637 | 0.70 | -1.8 | |
3,799,944 | - | Psest_3637 | 0.70 | -2.8 | |
3,800,042 | + | Psest_3637 | 0.79 | -3.0 | |
3,800,043 | - | Psest_3637 | 0.79 | -2.7 | |
3,800,043 | - | Psest_3637 | 0.79 | +0.7 | |
3,800,062 | - | Psest_3637 | 0.81 | -0.8 | |
3,800,112 | - | Psest_3637 | 0.86 | -3.0 | |
3,800,151 | - | Psest_3637 | 0.89 | -2.4 |
Or see this region's nucleotide sequence