Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03630 and PGA1_c03640 are separated by 337 nucleotides PGA1_c03640 and PGA1_c03650 are separated by 104 nucleotides PGA1_c03650 and PGA1_c03660 are separated by 163 nucleotides
PGA1_c03630: PGA1_c03630 - succinyl-CoA ligase [ADP-forming] subunit beta, at 350,241 to 351,434
_c03630
PGA1_c03640: PGA1_c03640 - Predicted ATPase, at 351,772 to 352,320
_c03640
PGA1_c03650: PGA1_c03650 - malate dehydrogenase Mdh, at 352,425 to 353,387
_c03650
PGA1_c03660: PGA1_c03660 - Predicted permeases, at 353,551 to 354,306
_c03660
Position (kb) 352
353
354 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 351.635 kb on - strand at 351.635 kb on - strand at 351.638 kb on + strand at 351.638 kb on + strand at 351.638 kb on + strand at 351.638 kb on + strand at 351.638 kb on + strand at 351.638 kb on + strand at 351.638 kb on + strand at 351.646 kb on - strand at 351.646 kb on - strand at 351.646 kb on - strand at 351.646 kb on - strand at 351.646 kb on - strand at 351.646 kb on - strand at 351.646 kb on - strand at 351.648 kb on + strand at 351.672 kb on - strand at 351.697 kb on - strand at 351.704 kb on + strand at 351.746 kb on + strand at 351.754 kb on - strand at 351.756 kb on + strand at 351.764 kb on - strand at 351.783 kb on + strand at 351.791 kb on - strand at 351.791 kb on - strand at 351.860 kb on - strand, within PGA1_c03640 at 351.882 kb on - strand, within PGA1_c03640 at 351.936 kb on - strand, within PGA1_c03640 at 351.973 kb on + strand, within PGA1_c03640 at 351.988 kb on + strand, within PGA1_c03640 at 351.996 kb on - strand, within PGA1_c03640 at 351.999 kb on + strand, within PGA1_c03640 at 352.006 kb on + strand, within PGA1_c03640 at 352.094 kb on + strand, within PGA1_c03640 at 352.094 kb on + strand, within PGA1_c03640 at 352.094 kb on + strand, within PGA1_c03640 at 352.094 kb on + strand, within PGA1_c03640 at 352.094 kb on + strand, within PGA1_c03640 at 352.094 kb on + strand, within PGA1_c03640 at 352.102 kb on - strand, within PGA1_c03640 at 352.115 kb on + strand, within PGA1_c03640 at 352.171 kb on - strand, within PGA1_c03640 at 352.184 kb on + strand, within PGA1_c03640 at 352.184 kb on + strand, within PGA1_c03640 at 352.192 kb on - strand, within PGA1_c03640 at 352.203 kb on + strand, within PGA1_c03640 at 352.204 kb on + strand, within PGA1_c03640 at 352.208 kb on + strand, within PGA1_c03640 at 352.266 kb on + strand at 352.313 kb on - strand at 352.327 kb on + strand at 352.375 kb on - strand at 352.385 kb on + strand at 352.419 kb on - strand at 352.419 kb on - strand at 352.419 kb on - strand at 352.419 kb on - strand at 352.424 kb on - strand at 352.440 kb on + strand at 353.354 kb on - strand at 353.433 kb on - strand at 353.465 kb on + strand at 353.470 kb on + strand at 353.477 kb on + strand at 353.479 kb on + strand at 353.487 kb on - strand at 353.487 kb on - strand at 353.489 kb on + strand at 353.489 kb on + strand at 353.489 kb on + strand at 353.495 kb on - strand at 353.497 kb on - strand at 353.497 kb on - strand at 353.497 kb on - strand at 353.497 kb on - strand at 353.498 kb on + strand at 353.498 kb on + strand at 353.498 kb on + strand at 353.506 kb on - strand at 353.506 kb on - strand at 353.566 kb on - strand at 353.600 kb on + strand at 353.632 kb on - strand, within PGA1_c03660 at 353.635 kb on + strand, within PGA1_c03660 at 353.635 kb on + strand, within PGA1_c03660 at 353.686 kb on - strand, within PGA1_c03660 at 353.695 kb on + strand, within PGA1_c03660 at 353.695 kb on + strand, within PGA1_c03660 at 353.701 kb on + strand, within PGA1_c03660 at 353.718 kb on - strand, within PGA1_c03660 at 353.745 kb on + strand, within PGA1_c03660 at 353.750 kb on - strand, within PGA1_c03660 at 353.750 kb on - strand, within PGA1_c03660 at 353.788 kb on - strand, within PGA1_c03660 at 353.810 kb on + strand, within PGA1_c03660 at 353.829 kb on - strand, within PGA1_c03660 at 353.844 kb on - strand, within PGA1_c03660 at 353.848 kb on + strand, within PGA1_c03660 at 353.901 kb on + strand, within PGA1_c03660 at 353.901 kb on + strand, within PGA1_c03660 at 353.918 kb on - strand, within PGA1_c03660 at 353.928 kb on - strand, within PGA1_c03660 at 354.023 kb on + strand, within PGA1_c03660 at 354.067 kb on + strand, within PGA1_c03660 at 354.067 kb on + strand, within PGA1_c03660 at 354.075 kb on - strand, within PGA1_c03660 at 354.076 kb on + strand, within PGA1_c03660 at 354.093 kb on + strand, within PGA1_c03660 at 354.131 kb on + strand, within PGA1_c03660 at 354.168 kb on - strand, within PGA1_c03660 at 354.175 kb on + strand, within PGA1_c03660 at 354.176 kb on + strand, within PGA1_c03660 at 354.176 kb on + strand, within PGA1_c03660 at 354.184 kb on - strand, within PGA1_c03660 at 354.186 kb on + strand, within PGA1_c03660 at 354.186 kb on + strand, within PGA1_c03660 at 354.194 kb on - strand, within PGA1_c03660 at 354.194 kb on - strand, within PGA1_c03660 at 354.221 kb on + strand, within PGA1_c03660 at 354.222 kb on - strand, within PGA1_c03660 at 354.222 kb on - strand, within PGA1_c03660 at 354.229 kb on - strand, within PGA1_c03660 at 354.244 kb on + strand at 354.252 kb on - strand at 354.285 kb on + strand at 354.285 kb on + strand at 354.295 kb on + strand at 354.295 kb on + strand at 354.295 kb on + strand at 354.298 kb on - strand at 354.300 kb on + strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.308 kb on - strand at 354.308 kb on - strand at 354.318 kb on - strand at 354.355 kb on - strand at 354.379 kb on - strand at 354.385 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 351,635 - -0.7 351,635 - -0.8 351,638 + -0.2 351,638 + +0.6 351,638 + -0.1 351,638 + -0.8 351,638 + -0.2 351,638 + -0.5 351,638 + -2.1 351,646 - +0.4 351,646 - -0.3 351,646 - +0.7 351,646 - -0.1 351,646 - -1.0 351,646 - -0.5 351,646 - -0.9 351,648 + -0.1 351,672 - +0.0 351,697 - -0.1 351,704 + +0.1 351,746 + -0.2 351,754 - -0.0 351,756 + -0.1 351,764 - +0.7 351,783 + +0.3 351,791 - -1.8 351,791 - -0.3 351,860 - PGA1_c03640 0.16 +0.0 351,882 - PGA1_c03640 0.20 +1.1 351,936 - PGA1_c03640 0.30 -0.7 351,973 + PGA1_c03640 0.37 -0.5 351,988 + PGA1_c03640 0.39 +0.5 351,996 - PGA1_c03640 0.41 +0.2 351,999 + PGA1_c03640 0.41 +0.1 352,006 + PGA1_c03640 0.43 -0.1 352,094 + PGA1_c03640 0.59 -0.3 352,094 + PGA1_c03640 0.59 +0.6 352,094 + PGA1_c03640 0.59 -0.0 352,094 + PGA1_c03640 0.59 -0.3 352,094 + PGA1_c03640 0.59 +0.4 352,094 + PGA1_c03640 0.59 -0.2 352,102 - PGA1_c03640 0.60 +0.3 352,115 + PGA1_c03640 0.62 -0.9 352,171 - PGA1_c03640 0.73 -0.7 352,184 + PGA1_c03640 0.75 -0.3 352,184 + PGA1_c03640 0.75 -0.8 352,192 - PGA1_c03640 0.77 +0.4 352,203 + PGA1_c03640 0.79 -0.8 352,204 + PGA1_c03640 0.79 +0.5 352,208 + PGA1_c03640 0.79 -0.1 352,266 + +1.5 352,313 - -0.3 352,327 + +0.2 352,375 - -0.1 352,385 + +0.5 352,419 - +0.2 352,419 - +0.0 352,419 - -0.5 352,419 - -0.0 352,424 - -0.2 352,440 + -0.1 353,354 - -3.0 353,433 - -0.5 353,465 + +0.8 353,470 + +0.9 353,477 + +0.9 353,479 + -0.2 353,487 - +1.0 353,487 - +0.6 353,489 + +0.7 353,489 + -0.4 353,489 + -0.5 353,495 - -0.0 353,497 - +0.0 353,497 - -0.7 353,497 - -0.2 353,497 - -0.4 353,498 + -0.3 353,498 + +0.5 353,498 + -0.3 353,506 - -0.8 353,506 - -1.5 353,566 - +0.6 353,600 + -0.2 353,632 - PGA1_c03660 0.11 +0.0 353,635 + PGA1_c03660 0.11 +0.4 353,635 + PGA1_c03660 0.11 +0.4 353,686 - PGA1_c03660 0.18 +1.3 353,695 + PGA1_c03660 0.19 -0.0 353,695 + PGA1_c03660 0.19 +0.0 353,701 + PGA1_c03660 0.20 -0.1 353,718 - PGA1_c03660 0.22 +0.2 353,745 + PGA1_c03660 0.26 -1.0 353,750 - PGA1_c03660 0.26 -0.4 353,750 - PGA1_c03660 0.26 +0.8 353,788 - PGA1_c03660 0.31 -0.3 353,810 + PGA1_c03660 0.34 +0.2 353,829 - PGA1_c03660 0.37 -0.2 353,844 - PGA1_c03660 0.39 +1.3 353,848 + PGA1_c03660 0.39 +0.2 353,901 + PGA1_c03660 0.46 +0.2 353,901 + PGA1_c03660 0.46 +0.0 353,918 - PGA1_c03660 0.49 -0.1 353,928 - PGA1_c03660 0.50 -0.2 354,023 + PGA1_c03660 0.62 +0.7 354,067 + PGA1_c03660 0.68 -0.2 354,067 + PGA1_c03660 0.68 -0.0 354,075 - PGA1_c03660 0.69 +0.6 354,076 + PGA1_c03660 0.69 -0.6 354,093 + PGA1_c03660 0.72 -1.3 354,131 + PGA1_c03660 0.77 +0.3 354,168 - PGA1_c03660 0.82 +0.7 354,175 + PGA1_c03660 0.83 -0.4 354,176 + PGA1_c03660 0.83 +0.4 354,176 + PGA1_c03660 0.83 +0.4 354,184 - PGA1_c03660 0.84 +1.1 354,186 + PGA1_c03660 0.84 +0.3 354,186 + PGA1_c03660 0.84 +1.0 354,194 - PGA1_c03660 0.85 +0.1 354,194 - PGA1_c03660 0.85 +0.9 354,221 + PGA1_c03660 0.89 -0.0 354,222 - PGA1_c03660 0.89 -0.1 354,222 - PGA1_c03660 0.89 -0.4 354,229 - PGA1_c03660 0.90 +0.8 354,244 + -0.5 354,252 - +0.7 354,285 + -0.2 354,285 + -0.9 354,295 + -0.0 354,295 + -0.3 354,295 + +0.1 354,298 - -0.9 354,300 + +1.0 354,303 - +0.1 354,303 - +0.0 354,303 - +0.1 354,303 - +0.1 354,303 - +0.2 354,303 - -0.7 354,308 - +0.4 354,308 - -0.7 354,318 - -0.3 354,355 - +0.4 354,379 - -0.1 354,385 + -0.7
Or see this region's nucleotide sequence