Experiment: LB 30C timecourse1 timepoint 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2411 and Psest_2412 are separated by 43 nucleotides Psest_2412 and Psest_2413 are separated by 29 nucleotides Psest_2413 and Psest_2414 overlap by 1 nucleotides
Psest_2411: Psest_2411 - PAS domain S-box, at 2,568,127 to 2,571,120
_2411
Psest_2412: Psest_2412 - Predicted phosphatase, at 2,571,164 to 2,573,125
_2412
Psest_2413: Psest_2413 - Periplasmic protein TonB, links inner and outer membranes, at 2,573,155 to 2,573,943
_2413
Psest_2414: Psest_2414 - TolR protein, at 2,573,943 to 2,574,407
_2414
Position (kb)
2571
2572
2573
2574 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2570.291 kb on + strand, within Psest_2411 at 2570.291 kb on + strand, within Psest_2411 at 2570.291 kb on + strand, within Psest_2411 at 2570.291 kb on + strand, within Psest_2411 at 2570.291 kb on + strand, within Psest_2411 at 2571.307 kb on + strand at 2571.336 kb on - strand at 2571.351 kb on - strand at 2571.351 kb on - strand at 2571.723 kb on + strand, within Psest_2412 at 2571.723 kb on + strand, within Psest_2412 at 2571.723 kb on + strand, within Psest_2412 at 2571.723 kb on + strand, within Psest_2412 at 2571.724 kb on - strand, within Psest_2412 at 2571.921 kb on + strand, within Psest_2412 at 2571.921 kb on + strand, within Psest_2412 at 2571.921 kb on + strand, within Psest_2412 at 2571.921 kb on + strand, within Psest_2412 at 2571.921 kb on + strand, within Psest_2412 at 2571.921 kb on + strand, within Psest_2412 at 2571.922 kb on - strand, within Psest_2412 at 2571.922 kb on - strand, within Psest_2412 at 2571.922 kb on - strand, within Psest_2412 at 2571.922 kb on - strand, within Psest_2412 at 2571.922 kb on - strand, within Psest_2412 at 2571.922 kb on - strand, within Psest_2412 at 2571.922 kb on - strand, within Psest_2412 at 2571.922 kb on - strand, within Psest_2412 at 2571.999 kb on + strand, within Psest_2412 at 2572.000 kb on - strand, within Psest_2412 at 2572.000 kb on - strand, within Psest_2412 at 2572.005 kb on + strand, within Psest_2412 at 2572.005 kb on + strand, within Psest_2412 at 2572.005 kb on + strand, within Psest_2412 at 2572.005 kb on + strand, within Psest_2412 at 2572.005 kb on + strand, within Psest_2412 at 2572.006 kb on - strand, within Psest_2412 at 2572.006 kb on - strand, within Psest_2412 at 2572.006 kb on - strand, within Psest_2412 at 2572.006 kb on - strand, within Psest_2412 at 2572.006 kb on - strand, within Psest_2412 at 2572.006 kb on - strand, within Psest_2412 at 2572.006 kb on - strand, within Psest_2412 at 2572.032 kb on + strand, within Psest_2412 at 2572.033 kb on - strand, within Psest_2412 at 2572.033 kb on - strand, within Psest_2412 at 2572.139 kb on + strand, within Psest_2412 at 2572.139 kb on + strand, within Psest_2412 at 2572.140 kb on - strand, within Psest_2412 at 2572.179 kb on + strand, within Psest_2412 at 2572.210 kb on + strand, within Psest_2412 at 2572.210 kb on + strand, within Psest_2412 at 2572.245 kb on + strand, within Psest_2412 at 2572.286 kb on - strand, within Psest_2412 at 2572.332 kb on + strand, within Psest_2412 at 2572.332 kb on + strand, within Psest_2412 at 2572.332 kb on + strand, within Psest_2412 at 2572.332 kb on + strand, within Psest_2412 at 2572.332 kb on + strand, within Psest_2412 at 2572.332 kb on + strand, within Psest_2412 at 2572.333 kb on - strand, within Psest_2412 at 2572.333 kb on - strand, within Psest_2412 at 2572.333 kb on - strand, within Psest_2412 at 2572.333 kb on - strand, within Psest_2412 at 2572.333 kb on - strand, within Psest_2412 at 2572.333 kb on - strand, within Psest_2412 at 2572.333 kb on - strand, within Psest_2412 at 2572.333 kb on - strand, within Psest_2412 at 2572.362 kb on + strand, within Psest_2412 at 2572.362 kb on + strand, within Psest_2412 at 2572.362 kb on + strand, within Psest_2412 at 2572.512 kb on + strand, within Psest_2412 at 2572.668 kb on + strand, within Psest_2412 at 2572.854 kb on + strand, within Psest_2412 at 2572.854 kb on + strand, within Psest_2412 at 2572.906 kb on + strand, within Psest_2412 at 2573.331 kb on + strand, within Psest_2413 at 2573.331 kb on + strand, within Psest_2413 at 2573.331 kb on + strand, within Psest_2413 at 2573.331 kb on + strand, within Psest_2413 at 2573.331 kb on + strand, within Psest_2413 at 2573.332 kb on - strand, within Psest_2413 at 2573.332 kb on - strand, within Psest_2413 at 2573.333 kb on + strand, within Psest_2413 at 2573.333 kb on + strand, within Psest_2413 at 2573.334 kb on - strand, within Psest_2413 at 2574.070 kb on + strand, within Psest_2414 at 2574.071 kb on - strand, within Psest_2414
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 3 remove 2,570,291 + Psest_2411 0.72 +2.8 2,570,291 + Psest_2411 0.72 +0.2 2,570,291 + Psest_2411 0.72 -0.8 2,570,291 + Psest_2411 0.72 -0.1 2,570,291 + Psest_2411 0.72 -0.3 2,571,307 + -0.4 2,571,336 - -0.4 2,571,351 - +0.2 2,571,351 - +0.6 2,571,723 + Psest_2412 0.28 +2.2 2,571,723 + Psest_2412 0.28 -0.8 2,571,723 + Psest_2412 0.28 +0.9 2,571,723 + Psest_2412 0.28 -0.8 2,571,724 - Psest_2412 0.29 +2.2 2,571,921 + Psest_2412 0.39 -0.8 2,571,921 + Psest_2412 0.39 +3.2 2,571,921 + Psest_2412 0.39 +1.3 2,571,921 + Psest_2412 0.39 +0.2 2,571,921 + Psest_2412 0.39 +1.2 2,571,921 + Psest_2412 0.39 -0.8 2,571,922 - Psest_2412 0.39 -0.0 2,571,922 - Psest_2412 0.39 -0.0 2,571,922 - Psest_2412 0.39 +1.8 2,571,922 - Psest_2412 0.39 +2.8 2,571,922 - Psest_2412 0.39 +1.2 2,571,922 - Psest_2412 0.39 -2.1 2,571,922 - Psest_2412 0.39 +0.9 2,571,922 - Psest_2412 0.39 -0.9 2,571,999 + Psest_2412 0.43 +0.3 2,572,000 - Psest_2412 0.43 +0.6 2,572,000 - Psest_2412 0.43 -1.1 2,572,005 + Psest_2412 0.43 +0.2 2,572,005 + Psest_2412 0.43 -1.1 2,572,005 + Psest_2412 0.43 +0.8 2,572,005 + Psest_2412 0.43 +1.2 2,572,005 + Psest_2412 0.43 -1.0 2,572,006 - Psest_2412 0.43 +0.8 2,572,006 - Psest_2412 0.43 +0.4 2,572,006 - Psest_2412 0.43 -0.6 2,572,006 - Psest_2412 0.43 +1.2 2,572,006 - Psest_2412 0.43 -0.4 2,572,006 - Psest_2412 0.43 +1.8 2,572,006 - Psest_2412 0.43 -0.4 2,572,032 + Psest_2412 0.44 +2.6 2,572,033 - Psest_2412 0.44 -0.6 2,572,033 - Psest_2412 0.44 +1.2 2,572,139 + Psest_2412 0.50 -0.7 2,572,139 + Psest_2412 0.50 +0.4 2,572,140 - Psest_2412 0.50 +2.2 2,572,179 + Psest_2412 0.52 +0.7 2,572,210 + Psest_2412 0.53 +0.6 2,572,210 + Psest_2412 0.53 +1.5 2,572,245 + Psest_2412 0.55 +3.1 2,572,286 - Psest_2412 0.57 -0.3 2,572,332 + Psest_2412 0.60 +0.6 2,572,332 + Psest_2412 0.60 -0.5 2,572,332 + Psest_2412 0.60 -1.0 2,572,332 + Psest_2412 0.60 +1.4 2,572,332 + Psest_2412 0.60 +0.7 2,572,332 + Psest_2412 0.60 -0.6 2,572,333 - Psest_2412 0.60 -1.6 2,572,333 - Psest_2412 0.60 -1.1 2,572,333 - Psest_2412 0.60 -1.3 2,572,333 - Psest_2412 0.60 +1.2 2,572,333 - Psest_2412 0.60 -0.9 2,572,333 - Psest_2412 0.60 +0.4 2,572,333 - Psest_2412 0.60 +1.2 2,572,333 - Psest_2412 0.60 +1.6 2,572,362 + Psest_2412 0.61 +0.7 2,572,362 + Psest_2412 0.61 +1.0 2,572,362 + Psest_2412 0.61 +0.4 2,572,512 + Psest_2412 0.69 +2.2 2,572,668 + Psest_2412 0.77 -1.1 2,572,854 + Psest_2412 0.86 +1.2 2,572,854 + Psest_2412 0.86 +2.2 2,572,906 + Psest_2412 0.89 +1.4 2,573,331 + Psest_2413 0.22 +0.8 2,573,331 + Psest_2413 0.22 +1.2 2,573,331 + Psest_2413 0.22 +2.2 2,573,331 + Psest_2413 0.22 +0.2 2,573,331 + Psest_2413 0.22 +1.9 2,573,332 - Psest_2413 0.22 +1.5 2,573,332 - Psest_2413 0.22 +0.9 2,573,333 + Psest_2413 0.23 +1.2 2,573,333 + Psest_2413 0.23 +0.5 2,573,334 - Psest_2413 0.23 +1.9 2,574,070 + Psest_2414 0.27 -1.6 2,574,071 - Psest_2414 0.28 +1.2
Or see this region's nucleotide sequence