Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2358

Experiment: LB 30C timecourse1 timepoint 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2356 and Psest_2357 are separated by 1 nucleotidesPsest_2357 and Psest_2358 overlap by 1 nucleotidesPsest_2358 and Psest_2359 overlap by 4 nucleotidesPsest_2359 and Psest_2360 overlap by 4 nucleotides Psest_2356: Psest_2356 - Fatty acid desaturase, at 2,511,479 to 2,512,501 _2356 Psest_2357: Psest_2357 - Short-chain dehydrogenases of various substrate specificities, at 2,512,503 to 2,513,291 _2357 Psest_2358: Psest_2358 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,513,291 to 2,514,049 _2358 Psest_2359: Psest_2359 - Predicted permeases, at 2,514,046 to 2,514,930 _2359 Psest_2360: Psest_2360 - Uncharacterized protein, putative amidase, at 2,514,927 to 2,515,688 _2360 Position (kb) 2513 2514 2515Strain fitness (log2 ratio) -1 0 1 2 3at 2512.331 kb on + strand, within Psest_2356at 2512.343 kb on + strand, within Psest_2356at 2512.343 kb on + strand, within Psest_2356at 2512.343 kb on + strand, within Psest_2356at 2512.343 kb on + strand, within Psest_2356at 2512.343 kb on + strand, within Psest_2356at 2512.343 kb on + strand, within Psest_2356at 2512.343 kb on + strand, within Psest_2356at 2512.343 kb on + strand, within Psest_2356at 2512.343 kb on + strand, within Psest_2356at 2512.344 kb on - strand, within Psest_2356at 2512.344 kb on - strand, within Psest_2356at 2512.344 kb on - strand, within Psest_2356at 2512.464 kb on - strandat 2512.522 kb on - strandat 2512.522 kb on - strandat 2512.522 kb on - strandat 2512.725 kb on + strand, within Psest_2357at 2512.975 kb on - strand, within Psest_2357at 2512.975 kb on - strand, within Psest_2357at 2512.975 kb on - strand, within Psest_2357at 2512.996 kb on + strand, within Psest_2357at 2513.751 kb on - strand, within Psest_2358at 2513.751 kb on - strand, within Psest_2358at 2513.751 kb on - strand, within Psest_2358at 2513.996 kb on + strandat 2513.996 kb on + strandat 2513.996 kb on + strandat 2513.996 kb on + strandat 2513.997 kb on - strandat 2514.169 kb on + strand, within Psest_2359at 2514.169 kb on + strand, within Psest_2359at 2514.170 kb on - strand, within Psest_2359at 2514.337 kb on + strand, within Psest_2359at 2514.337 kb on + strand, within Psest_2359at 2514.338 kb on - strand, within Psest_2359at 2514.338 kb on - strand, within Psest_2359at 2514.338 kb on - strand, within Psest_2359

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 3
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2,512,331 + Psest_2356 0.83 -0.5
2,512,343 + Psest_2356 0.84 +0.6
2,512,343 + Psest_2356 0.84 +1.1
2,512,343 + Psest_2356 0.84 +0.5
2,512,343 + Psest_2356 0.84 +1.7
2,512,343 + Psest_2356 0.84 +1.1
2,512,343 + Psest_2356 0.84 +1.1
2,512,343 + Psest_2356 0.84 +0.1
2,512,343 + Psest_2356 0.84 +2.1
2,512,343 + Psest_2356 0.84 +1.7
2,512,344 - Psest_2356 0.85 -0.9
2,512,344 - Psest_2356 0.85 -0.4
2,512,344 - Psest_2356 0.85 +0.1
2,512,464 - +0.0
2,512,522 - +0.1
2,512,522 - +0.6
2,512,522 - -1.3
2,512,725 + Psest_2357 0.28 +0.1
2,512,975 - Psest_2357 0.60 -0.9
2,512,975 - Psest_2357 0.60 +3.1
2,512,975 - Psest_2357 0.60 -0.5
2,512,996 + Psest_2357 0.62 -0.1
2,513,751 - Psest_2358 0.61 -0.5
2,513,751 - Psest_2358 0.61 -1.4
2,513,751 - Psest_2358 0.61 +0.1
2,513,996 + +0.7
2,513,996 + +1.3
2,513,996 + -0.1
2,513,996 + -0.1
2,513,997 - -0.2
2,514,169 + Psest_2359 0.14 -0.1
2,514,169 + Psest_2359 0.14 +0.7
2,514,170 - Psest_2359 0.14 -0.0
2,514,337 + Psest_2359 0.33 +1.1
2,514,337 + Psest_2359 0.33 +1.1
2,514,338 - Psest_2359 0.33 +1.1
2,514,338 - Psest_2359 0.33 +0.3
2,514,338 - Psest_2359 0.33 -0.9

Or see this region's nucleotide sequence