Experiment: LB 30C timecourse1 timepoint 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1753 and Psest_1754 are separated by 135 nucleotides Psest_1754 and Psest_1755 overlap by 4 nucleotides Psest_1755 and Psest_1756 are separated by 92 nucleotides Psest_1756 and Psest_1757 overlap by 4 nucleotides
Psest_1753: Psest_1753 - Flagellar hook-length control protein FliK., at 1,855,889 to 1,857,418
_1753
Psest_1754: Psest_1754 - heme ABC exporter, ATP-binding protein CcmA, at 1,857,554 to 1,858,189
_1754
Psest_1755: Psest_1755 - heme exporter protein CcmB, at 1,858,186 to 1,858,857
_1755
Psest_1756: Psest_1756 - heme exporter protein CcmC, at 1,858,950 to 1,859,705
_1756
Psest_1757: Psest_1757 - heme exporter protein CcmD, at 1,859,702 to 1,859,878
_1757
Position (kb)
1858
1859 Strain fitness (log2 ratio)
-2
-1
0
1 at 1857.436 kb on + strand at 1857.437 kb on - strand at 1857.437 kb on - strand at 1857.481 kb on + strand at 1857.481 kb on + strand at 1857.481 kb on + strand at 1857.481 kb on + strand at 1857.481 kb on + strand at 1857.482 kb on - strand at 1857.482 kb on - strand at 1857.482 kb on - strand at 1857.482 kb on - strand at 1857.482 kb on - strand at 1857.483 kb on + strand at 1857.514 kb on + strand at 1858.896 kb on + strand at 1858.896 kb on + strand at 1858.896 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 3 remove 1,857,436 + -2.7 1,857,437 - +0.1 1,857,437 - -0.9 1,857,481 + -0.8 1,857,481 + -0.0 1,857,481 + +0.8 1,857,481 + +0.1 1,857,481 + -0.1 1,857,482 - -1.6 1,857,482 - -0.8 1,857,482 - -1.8 1,857,482 - -1.6 1,857,482 - -1.4 1,857,483 + -2.5 1,857,514 + +0.3 1,858,896 + +0.6 1,858,896 + -1.3 1,858,896 + -0.4
Or see this region's nucleotide sequence