Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01010 and PGA1_c01020 are separated by 33 nucleotides PGA1_c01020 and PGA1_c01030 are separated by 99 nucleotides PGA1_c01030 and PGA1_c01040 are separated by 59 nucleotides
PGA1_c01010: PGA1_c01010 - guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase SpoT, at 94,762 to 96,894
_c01010
PGA1_c01020: PGA1_c01020 - Uncharacterized protein conserved in bacteria, at 96,928 to 97,581
_c01020
PGA1_c01030: PGA1_c01030 - pyridoxine 5'-phosphate synthase PdxJ, at 97,681 to 98,442
_c01030
PGA1_c01040: PGA1_c01040 - holo-[acyl-carrier-protein] synthase AcpS, at 98,502 to 98,933
_c01040
Position (kb) 96
97
98 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 95.940 kb on + strand, within PGA1_c01010 at 95.950 kb on - strand, within PGA1_c01010 at 95.951 kb on - strand, within PGA1_c01010 at 95.961 kb on + strand, within PGA1_c01010 at 95.961 kb on + strand, within PGA1_c01010 at 95.961 kb on + strand, within PGA1_c01010 at 95.961 kb on + strand, within PGA1_c01010 at 95.969 kb on - strand, within PGA1_c01010 at 95.969 kb on - strand, within PGA1_c01010 at 95.969 kb on - strand, within PGA1_c01010 at 95.969 kb on - strand, within PGA1_c01010 at 95.969 kb on - strand, within PGA1_c01010 at 95.977 kb on - strand, within PGA1_c01010 at 95.991 kb on - strand, within PGA1_c01010 at 95.998 kb on + strand, within PGA1_c01010 at 95.998 kb on + strand, within PGA1_c01010 at 96.021 kb on - strand, within PGA1_c01010 at 96.031 kb on - strand, within PGA1_c01010 at 96.067 kb on + strand, within PGA1_c01010 at 96.075 kb on - strand, within PGA1_c01010 at 96.075 kb on - strand, within PGA1_c01010 at 96.131 kb on + strand, within PGA1_c01010 at 96.159 kb on - strand, within PGA1_c01010 at 96.262 kb on + strand, within PGA1_c01010 at 96.296 kb on + strand, within PGA1_c01010 at 96.298 kb on + strand, within PGA1_c01010 at 96.298 kb on + strand, within PGA1_c01010 at 96.298 kb on + strand, within PGA1_c01010 at 96.304 kb on - strand, within PGA1_c01010 at 96.304 kb on - strand, within PGA1_c01010 at 96.306 kb on - strand, within PGA1_c01010 at 96.380 kb on + strand, within PGA1_c01010 at 96.388 kb on - strand, within PGA1_c01010 at 96.388 kb on - strand, within PGA1_c01010 at 96.388 kb on - strand, within PGA1_c01010 at 96.412 kb on + strand, within PGA1_c01010 at 96.412 kb on - strand, within PGA1_c01010 at 96.430 kb on + strand, within PGA1_c01010 at 96.448 kb on + strand, within PGA1_c01010 at 96.456 kb on - strand, within PGA1_c01010 at 96.456 kb on - strand, within PGA1_c01010 at 96.515 kb on + strand, within PGA1_c01010 at 96.535 kb on - strand, within PGA1_c01010 at 96.535 kb on - strand, within PGA1_c01010 at 96.567 kb on + strand, within PGA1_c01010 at 96.567 kb on + strand, within PGA1_c01010 at 96.600 kb on + strand, within PGA1_c01010 at 96.618 kb on - strand, within PGA1_c01010 at 96.628 kb on + strand, within PGA1_c01010 at 96.635 kb on + strand, within PGA1_c01010 at 96.643 kb on - strand, within PGA1_c01010 at 96.673 kb on + strand, within PGA1_c01010 at 96.673 kb on + strand, within PGA1_c01010 at 96.673 kb on + strand, within PGA1_c01010 at 96.673 kb on + strand, within PGA1_c01010 at 96.673 kb on + strand, within PGA1_c01010 at 96.681 kb on - strand at 96.681 kb on - strand at 96.681 kb on - strand at 96.684 kb on + strand at 96.684 kb on + strand at 96.692 kb on - strand at 96.727 kb on - strand at 96.858 kb on - strand at 96.858 kb on - strand at 96.858 kb on - strand at 97.487 kb on + strand, within PGA1_c01020 at 97.559 kb on + strand at 97.575 kb on + strand at 97.621 kb on + strand at 97.621 kb on + strand at 97.629 kb on - strand at 97.631 kb on + strand at 97.642 kb on + strand at 98.481 kb on - strand at 98.488 kb on + strand at 98.491 kb on - strand at 98.496 kb on - strand at 98.496 kb on - strand at 98.496 kb on - strand at 98.498 kb on + strand at 98.505 kb on + strand at 98.513 kb on + strand at 98.554 kb on + strand, within PGA1_c01040
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 95,940 + PGA1_c01010 0.55 -2.6 95,950 - PGA1_c01010 0.56 -3.1 95,951 - PGA1_c01010 0.56 -1.7 95,961 + PGA1_c01010 0.56 -3.5 95,961 + PGA1_c01010 0.56 -1.6 95,961 + PGA1_c01010 0.56 -3.7 95,961 + PGA1_c01010 0.56 -3.8 95,969 - PGA1_c01010 0.57 -2.2 95,969 - PGA1_c01010 0.57 -3.7 95,969 - PGA1_c01010 0.57 -3.2 95,969 - PGA1_c01010 0.57 -1.2 95,969 - PGA1_c01010 0.57 -2.0 95,977 - PGA1_c01010 0.57 -3.3 95,991 - PGA1_c01010 0.58 -2.8 95,998 + PGA1_c01010 0.58 -2.7 95,998 + PGA1_c01010 0.58 -2.2 96,021 - PGA1_c01010 0.59 -2.5 96,031 - PGA1_c01010 0.59 -3.3 96,067 + PGA1_c01010 0.61 -4.5 96,075 - PGA1_c01010 0.62 -1.4 96,075 - PGA1_c01010 0.62 -2.4 96,131 + PGA1_c01010 0.64 -3.8 96,159 - PGA1_c01010 0.65 -3.9 96,262 + PGA1_c01010 0.70 -3.4 96,296 + PGA1_c01010 0.72 -2.9 96,298 + PGA1_c01010 0.72 -2.3 96,298 + PGA1_c01010 0.72 -1.5 96,298 + PGA1_c01010 0.72 -1.0 96,304 - PGA1_c01010 0.72 -2.2 96,304 - PGA1_c01010 0.72 -2.9 96,306 - PGA1_c01010 0.72 -3.2 96,380 + PGA1_c01010 0.76 -3.2 96,388 - PGA1_c01010 0.76 -2.3 96,388 - PGA1_c01010 0.76 -2.7 96,388 - PGA1_c01010 0.76 -2.7 96,412 + PGA1_c01010 0.77 -2.2 96,412 - PGA1_c01010 0.77 -2.8 96,430 + PGA1_c01010 0.78 -3.8 96,448 + PGA1_c01010 0.79 -3.3 96,456 - PGA1_c01010 0.79 -3.5 96,456 - PGA1_c01010 0.79 -2.6 96,515 + PGA1_c01010 0.82 -3.3 96,535 - PGA1_c01010 0.83 -3.6 96,535 - PGA1_c01010 0.83 -4.2 96,567 + PGA1_c01010 0.85 -2.2 96,567 + PGA1_c01010 0.85 -2.9 96,600 + PGA1_c01010 0.86 -3.7 96,618 - PGA1_c01010 0.87 -1.0 96,628 + PGA1_c01010 0.87 -2.4 96,635 + PGA1_c01010 0.88 -3.1 96,643 - PGA1_c01010 0.88 -1.9 96,673 + PGA1_c01010 0.90 -2.4 96,673 + PGA1_c01010 0.90 -3.0 96,673 + PGA1_c01010 0.90 -3.1 96,673 + PGA1_c01010 0.90 -1.3 96,673 + PGA1_c01010 0.90 -3.8 96,681 - -1.7 96,681 - -2.9 96,681 - -3.3 96,684 + -2.7 96,684 + -2.4 96,692 - -3.9 96,727 - -4.3 96,858 - -0.8 96,858 - +0.8 96,858 - -1.0 97,487 + PGA1_c01020 0.85 -0.5 97,559 + +0.0 97,575 + -2.0 97,621 + -0.4 97,621 + +1.4 97,629 - +0.6 97,631 + +0.7 97,642 + +0.1 98,481 - +1.3 98,488 + -1.0 98,491 - -0.9 98,496 - -2.0 98,496 - +0.1 98,496 - +0.6 98,498 + +0.2 98,505 + +0.8 98,513 + -0.5 98,554 + PGA1_c01040 0.12 -0.7
Or see this region's nucleotide sequence