Strain Fitness in Shewanella oneidensis MR-1 around SO4388

Experiment: NAG (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (N)
4,583,578	+		SO4387	0.36	-1.3
4,583,578	+		SO4387	0.36	+0.6
4,583,583	+		SO4387	0.37	-0.5
4,583,586	-		SO4387	0.37	-0.1
4,583,586	-		SO4387	0.37	-0.3
4,583,586	-		SO4387	0.37	-0.0
4,583,586	-		SO4387	0.37	+0.7
4,583,590	+		SO4387	0.37	+0.4
4,583,637	+		SO4387	0.40	-1.6
4,583,639	+		SO4387	0.40	-2.0
4,583,644	+		SO4387	0.41	-1.0
4,583,645	-		SO4387	0.41	+0.7
4,583,645	-		SO4387	0.41	-0.3
4,583,655	+		SO4387	0.41	-0.6
4,583,656	-		SO4387	0.42	-0.4
4,583,660	+		SO4387	0.42	+1.0
4,583,660	+		SO4387	0.42	-2.1
4,583,660	+		SO4387	0.42	+0.3
4,583,660	+		SO4387	0.42	-0.0
4,583,660	+		SO4387	0.42	-1.1
4,583,660	+		SO4387	0.42	+0.8
4,583,660	+		SO4387	0.42	+0.7
4,583,668	-		SO4387	0.42	-0.5
4,583,668	-		SO4387	0.42	+0.5
4,583,668	-		SO4387	0.42	+2.8
4,583,668	-		SO4387	0.42	-0.3
4,583,668	-		SO4387	0.42	+0.1
4,583,668	-		SO4387	0.42	+0.8
4,583,668	-		SO4387	0.42	-1.3
4,583,668	-		SO4387	0.42	+1.4
4,583,697	-		SO4387	0.44	+0.2
4,583,701	-		SO4387	0.45	+2.3
4,583,703	+		SO4387	0.45	+1.1
4,583,703	+		SO4387	0.45	-1.6
4,583,703	+		SO4387	0.45	-0.2
4,583,711	-		SO4387	0.45	+1.1
4,583,711	-		SO4387	0.45	-2.7
4,583,711	-		SO4387	0.45	-0.4
4,583,737	+		SO4387	0.47	+0.6
4,583,747	-		SO4387	0.48	-1.8
4,583,759	-		SO4387	0.48	+0.3
4,583,791	-		SO4387	0.50	-0.8
4,583,797	-		SO4387	0.51	+0.9
4,583,797	-		SO4387	0.51	-2.0
4,583,801	+		SO4387	0.51	-0.0
4,583,819	+		SO4387	0.52	-0.7
4,583,827	-		SO4387	0.53	+1.9
4,583,828	+		SO4387	0.53	-1.4
4,583,829	+		SO4387	0.53	+1.2
4,583,872	+		SO4387	0.56	+1.2
4,583,880	+		SO4387	0.56	-0.7
4,583,880	+		SO4387	0.56	-0.5
4,583,888	-		SO4387	0.57	-1.4
4,583,888	-		SO4387	0.57	-2.3
4,583,888	-		SO4387	0.57	+1.1
4,583,898	+		SO4387	0.58	-1.2
4,583,906	-		SO4387	0.58	-0.8
4,583,911	-		SO4387	0.58	+0.2
4,583,933	-		SO4387	0.60	-0.2
4,583,953	-		SO4387	0.61	+0.3
4,583,971	+		SO4387	0.62	-1.5
4,583,979	+		SO4387	0.63	+0.3
4,583,990	+		SO4387	0.64	-1.5
4,584,004	+		SO4387	0.65	+0.0
4,584,006	+		SO4387	0.65	+1.0
4,584,014	+		SO4387	0.65	+1.5
4,584,022	-		SO4387	0.66	+0.8
4,584,025	+		SO4387	0.66	+0.2
4,584,025	+		SO4387	0.66	-0.9
4,584,025	+		SO4387	0.66	-0.6
4,584,025	+		SO4387	0.66	+0.1
4,584,030	+		SO4387	0.66	-0.6
4,584,033	-		SO4387	0.67	-2.5
4,584,033	-		SO4387	0.67	-0.1
4,584,039	+		SO4387	0.67	+0.2
4,584,047	-		SO4387	0.68	-2.0
4,584,049	+		SO4387	0.68	+1.6
4,584,049	+		SO4387	0.68	+1.1
4,584,056	-		SO4387	0.68	+0.7
4,584,057	-		SO4387	0.68	+1.0
4,584,057	-		SO4387	0.68	+0.1
4,584,057	-		SO4387	0.68	+0.4
4,584,057	-		SO4387	0.68	+0.1
4,584,057	-		SO4387	0.68	+1.1
4,584,058	-		SO4387	0.68	-2.7
4,584,067	-		SO4387	0.69	-0.8
4,584,117	+		SO4387	0.72	+0.4
4,584,117	+		SO4387	0.72	+0.4
4,584,117	+		SO4387	0.72	+1.7
4,584,117	+		SO4387	0.72	+0.1
4,584,117	+		SO4387	0.72	+0.6
4,584,125	-		SO4387	0.73	+1.4
4,584,125	-		SO4387	0.73	-0.1
4,584,125	-		SO4387	0.73	-1.5
4,584,125	-		SO4387	0.73	-1.2
4,584,125	-		SO4387	0.73	-1.3
4,584,129	+		SO4387	0.73	-2.1
4,584,129	+		SO4387	0.73	-1.5
4,584,129	+		SO4387	0.73	-2.9
4,584,129	+		SO4387	0.73	-3.6
4,584,129	+		SO4387	0.73	-0.5
4,584,176	-		SO4387	0.76	-0.5
4,584,212	+		SO4387	0.79	-1.1
4,584,234	+		SO4387	0.80	+1.1
4,584,237	+		SO4387	0.80	+1.1
4,584,276	+		SO4387	0.83	+1.3
4,584,276	+				+1.4
4,584,276	+		SO4387	0.83	+0.5
4,584,282	+		SO4387	0.83	-0.3
4,584,282	+		SO4387	0.83	-1.5
4,584,282	+		SO4387	0.83	+1.3
4,584,283	-		SO4387	0.83	-1.9
4,584,284	-		SO4387	0.83	+0.6
4,584,290	-		SO4387	0.84	+0.6
4,584,290	-		SO4387	0.84	+0.4
4,584,298	+		SO4387	0.84	+0.8
4,584,333	+		SO4387	0.87	+1.1
4,584,333	+		SO4387	0.87	+0.1
4,584,347	+		SO4387	0.87	-0.9
4,584,349	+		SO4387	0.88	-1.5
4,584,377	-		SO4387	0.89	-1.6
4,584,404	+				-1.0
4,584,404	+				+0.0
4,584,412	-				+0.9
4,584,412	-				+1.2
4,584,412	-				+1.6
4,584,412	-				-0.3
4,584,412	-				-1.6
4,584,412	-				-0.8
4,584,414	+				+1.1
4,584,414	+				-1.1
4,584,414	+				+0.9
4,584,422	-				-0.9
4,584,424	+				+0.8
4,584,424	+				-0.6
4,584,424	+				+0.2
4,584,425	+				-2.6
4,584,430	-				-1.2
4,584,433	-				+0.9
4,584,435	+				+0.5
4,584,437	+				+0.3
4,584,438	-				-0.2
4,584,443	-				-1.3
4,584,444	-				+2.5
4,584,447	+				+0.6
4,584,454	+				-2.5
4,584,463	-				-0.1
4,584,474	+				+0.5
4,584,474	+				-0.5
4,584,474	+				-3.6
4,584,474	+				+3.6
4,584,482	-				-1.2
4,584,482	-				+0.2
4,584,482	-				+1.5
4,584,482	-				-0.0
4,584,492	-				+0.8
4,584,499	+				+1.3
4,584,499	+				+1.1
4,584,503	-				+1.2
4,584,506	+				+0.6
4,584,506	+				-1.8
4,584,506	+				-0.3
4,584,514	-				-1.3
4,584,529	+				-0.1
4,584,529	+				+0.1
4,584,537	-				-1.4
4,584,537	-				+0.6
4,584,537	-				+0.1
4,584,537	-				-1.7
4,584,537	-				+0.4
4,584,594	+				-1.2
4,584,596	-				-1.3
4,584,603	+				-0.3
4,584,603	+				-2.5
4,584,603	+				-0.4
4,584,604	+				+0.2
4,584,604	+				-0.6
4,584,604	+				-0.5
4,584,604	+				-0.7
4,584,604	+				-3.9
4,584,609	+				+1.1
4,584,609	+				+1.1
4,584,609	+				+1.0
4,584,609	+				-0.5
4,584,609	+				-0.1
4,584,609	+				-1.1
4,584,609	+				-0.4
4,584,609	+				+0.8
4,584,609	+				-0.4
4,584,609	+				+1.7
4,584,609	+				+0.1
4,584,611	-				-1.4
4,584,617	-				-1.1
4,584,617	-				-0.7
4,584,617	-				-0.8
4,584,617	-				-0.0
4,584,617	-				+2.6
4,584,617	-				-0.4
4,584,617	-				+1.5
4,584,617	-				-0.5
4,584,617	-				-0.8
4,584,617	-				-1.9
4,584,617	-				+1.2
4,584,617	-				+0.6
4,584,617	-				+2.6
4,584,617	-				-1.3
4,584,624	-				-0.1
4,584,631	+				-1.3
4,584,635	+				+0.2
4,584,640	+		SO4388	0.11	+0.7
4,584,640	+		SO4388	0.11	+1.1
4,584,640	+		SO4388	0.11	-1.2
4,584,640	+		SO4388	0.11	-0.2
4,584,640	+		SO4388	0.11	+0.3
4,584,643	-		SO4388	0.11	-0.5
4,584,648	-		SO4388	0.12	-1.1
4,584,648	-		SO4388	0.12	-1.3
4,584,648	-		SO4388	0.12	-0.1
4,584,662	+		SO4388	0.14	+0.7
4,584,677	+		SO4388	0.16	-2.2
4,584,685	-		SO4388	0.17	+0.9
4,584,685	-		SO4388	0.17	-1.2
4,584,742	+		SO4388	0.26	+1.3
4,584,742	+		SO4388	0.26	-0.2
4,584,742	+		SO4388	0.26	-0.2
4,584,750	-		SO4388	0.27	-2.9
4,584,750	-		SO4388	0.27	+0.7
4,584,810	+		SO4388	0.36	+0.5
4,584,810	+		SO4388	0.36	+1.0
4,584,811	-		SO4388	0.36	+0.2
4,584,811	-		SO4388	0.36	+1.9
4,584,818	-		SO4388	0.37	+0.7
4,584,818	-		SO4388	0.37	+1.6
4,584,818	-		SO4388	0.37	-2.6
4,584,819	-		SO4388	0.37	-0.2
4,584,828	+		SO4388	0.38	-1.0
4,584,828	+		SO4388	0.38	+1.2
4,584,828	+		SO4388	0.38	+0.7
4,584,828	+		SO4388	0.38	+0.9
4,584,828	+		SO4388	0.38	-0.9
4,584,828	+		SO4388	0.38	-1.3
4,584,828	+		SO4388	0.38	+0.6
4,584,828	+		SO4388	0.38	+1.8
4,584,828	+		SO4388	0.38	-1.7
4,584,828	-		SO4388	0.38	-1.6
4,584,835	+		SO4388	0.39	+2.0
4,584,835	+		SO4388	0.39	+0.7
4,584,835	+		SO4388	0.39	+1.3
4,584,835	+		SO4388	0.39	+0.1
4,584,835	+		SO4388	0.39	+0.4
4,584,835	+		SO4388	0.39	-1.2
4,584,843	-		SO4388	0.40	-0.4
4,584,843	-		SO4388	0.40	+0.7
4,584,843	-		SO4388	0.40	+2.8
4,584,843	-		SO4388	0.40	-1.8
4,584,886	+		SO4388	0.47	+1.5
4,584,888	+		SO4388	0.47	+1.7
4,584,888	+		SO4388	0.47	-0.1
4,584,899	+		SO4388	0.49	+1.1
4,584,899	+		SO4388	0.49	+1.5
4,584,899	+		SO4388	0.49	-0.2
4,584,907	-		SO4388	0.50	+0.7
4,584,912	+		SO4388	0.50	-0.9
4,584,912	+		SO4388	0.50	+0.5
4,584,912	+		SO4388	0.50	-2.1
4,584,920	-		SO4388	0.52	-2.9
4,584,930	+		SO4388	0.53	-1.0
4,584,930	-		SO4388	0.53	+0.2
4,584,941	-		SO4388	0.55	+0.1
4,584,946	-		SO4388	0.55	+0.9
4,584,946	-		SO4388	0.55	+0.5
4,584,948	+		SO4388	0.56	+1.5
4,584,948	+		SO4388	0.56	+0.2
4,584,948	+		SO4388	0.56	+0.2
4,584,987	+		SO4388	0.61	-0.3
4,584,987	+		SO4388	0.61	+3.9
4,584,987	+		SO4388	0.61	+0.1
4,584,992	+		SO4388	0.62	+2.6
4,584,995	-		SO4388	0.63	-1.6
4,584,997	+		SO4388	0.63	-0.3
4,584,997	+		SO4388	0.63	-0.2
4,584,997	+		SO4388	0.63	+0.0
4,584,997	+		SO4388	0.63	+0.4
4,585,000	-		SO4388	0.63	-1.5
4,585,018	+		SO4388	0.66	+0.9
4,585,024	+		SO4388	0.67	-1.4
4,585,025	+		SO4388	0.67	+0.9
4,585,026	-		SO4388	0.67	-0.4
4,585,032	-		SO4388	0.68	+2.0
4,585,032	-		SO4388	0.68	+0.9
4,585,056	+		SO4388	0.71	+0.5
4,585,056	+		SO4388	0.71	-1.8
4,585,064	-		SO4388	0.73	-1.0
4,585,064	-		SO4388	0.73	+0.0
4,585,064	-		SO4388	0.73	+0.2
4,585,064	-		SO4388	0.73	-0.5
4,585,090	+		SO4388	0.76	-1.8
4,585,098	-		SO4388	0.78	+0.6
4,585,100	+		SO4388	0.78	+0.4
4,585,104	+		SO4388	0.79	-2.6
4,585,108	+		SO4388	0.79	-0.2
4,585,109	+		SO4388	0.79	-0.7
4,585,112	-		SO4388	0.80	+0.6
4,585,190	+				-0.9
4,585,225	+				+0.2
4,585,250	+				+0.0
4,585,251	+				-1.4
4,585,258	-				+1.5
4,585,258	-				-0.5
4,585,258	-				-1.6
4,585,258	-				+0.4
4,585,263	-				-0.8
4,585,265	+				+2.5
4,585,274	+				+3.3
4,585,274	+				-0.9
4,585,274	+				+0.1
4,585,274	-				+1.8
4,585,279	+				-0.6
4,585,287	-				-0.7
4,585,287	-				+0.3
4,585,318	+				-1.3
4,585,319	-				-1.2
4,585,325	+				-1.2
4,585,339	-				-2.7
4,585,344	-				-0.4
4,585,354	-				-1.3
4,585,445	+				-1.4
4,585,446	+				+1.2
4,585,446	-				-0.2
4,585,523	-				+0.7
4,585,548	+				+0.5
4,585,586	-				+1.1
4,585,607	+				-1.4
4,585,613	+				-2.4
4,585,627	-				-0.1
4,585,645	-				+0.5
4,585,648	+				-0.5
4,585,706	+				-0.5
4,585,725	-				+0.2
4,585,725	-				+2.5
4,585,752	+				+1.9
4,585,787	+				+1.6
4,585,795	-				+1.3
4,585,807	-				-0.1
4,585,840	+				-1.0
4,585,858	-				+1.0
4,585,905	+				-1.7
4,585,905	-				-0.2