Strain Fitness in Shewanella oneidensis MR-1 around SO2401

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2399 and SO2400 are separated by 1 nucleotidesSO2400 and ihfB are separated by 122 nucleotidesihfB and rpsA are separated by 72 nucleotides SO2399: SO2399 - conserved hypothetical protein (NCBI ptt file), at 2,503,170 to 2,504,330 SO2399 SO2400: SO2400 - conserved hypothetical protein (NCBI ptt file), at 2,504,332 to 2,504,607 SO2400 SO2401: ihfB - integration host factor, beta subunit (NCBI ptt file), at 2,504,730 to 2,505,017 ihfB SO2402: rpsA - ribosomal protein S1 (NCBI ptt file), at 2,505,090 to 2,506,757 rpsA Position (kb) 2504 2505 2506Strain fitness (log2 ratio) -1 0 1at 2504.443 kb on - strand, within SO2400

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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2,504,443 - SO2400 0.40 +0.2

Or see this region's nucleotide sequence