Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0916 and SO0917 are separated by 154 nucleotides SO0917 and aac are separated by 282 nucleotides aac and SO0919 are separated by 430 nucleotides
SO0916: SO0916 - transcriptional regulator, MarR family (NCBI ptt file), at 944,481 to 945,410
SO0916
SO0917: SO0917 - conserved hypothetical protein TIGR00258 (NCBI ptt file), at 945,565 to 946,104
SO0917
SO0918: aac - aculeacin A acylase (NCBI ptt file), at 946,387 to 948,954
aac
SO0919: SO0919 - serine transporter, putative (NCBI ptt file), at 949,385 to 950,677
SO0919
Position (kb) 946
947
948
949 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 945.391 kb on - strand at 945.391 kb on - strand at 945.615 kb on - strand at 945.645 kb on + strand, within SO0917 at 945.653 kb on - strand, within SO0917 at 945.695 kb on + strand, within SO0917 at 945.695 kb on + strand, within SO0917 at 945.695 kb on + strand, within SO0917 at 945.721 kb on + strand, within SO0917 at 945.721 kb on + strand, within SO0917 at 945.721 kb on + strand, within SO0917 at 945.769 kb on + strand, within SO0917 at 945.769 kb on + strand, within SO0917 at 945.777 kb on - strand, within SO0917 at 945.801 kb on - strand, within SO0917 at 945.980 kb on - strand, within SO0917 at 945.980 kb on - strand, within SO0917 at 946.161 kb on + strand at 946.161 kb on + strand at 946.271 kb on + strand at 946.274 kb on + strand at 946.495 kb on + strand at 946.502 kb on + strand at 946.683 kb on - strand, within aac at 946.719 kb on + strand, within aac at 946.726 kb on + strand, within aac at 946.727 kb on - strand, within aac at 946.815 kb on - strand, within aac at 946.829 kb on + strand, within aac at 946.903 kb on - strand, within aac at 946.920 kb on + strand, within aac at 946.933 kb on - strand, within aac at 946.986 kb on - strand, within aac at 947.071 kb on - strand, within aac at 947.136 kb on + strand, within aac at 947.180 kb on + strand, within aac at 947.188 kb on - strand, within aac at 947.188 kb on - strand, within aac at 947.353 kb on - strand, within aac at 947.374 kb on + strand, within aac at 947.375 kb on - strand, within aac at 947.414 kb on + strand, within aac at 947.414 kb on + strand, within aac at 947.414 kb on + strand, within aac at 947.422 kb on - strand, within aac at 947.422 kb on - strand, within aac at 947.613 kb on - strand, within aac at 947.659 kb on + strand, within aac at 947.832 kb on + strand, within aac at 947.832 kb on + strand, within aac at 947.838 kb on + strand, within aac at 947.838 kb on + strand, within aac at 947.849 kb on + strand, within aac at 947.929 kb on - strand, within aac at 947.929 kb on - strand, within aac at 948.133 kb on + strand, within aac at 948.211 kb on + strand, within aac at 948.219 kb on - strand, within aac at 948.219 kb on - strand, within aac at 948.264 kb on - strand, within aac at 948.264 kb on - strand, within aac at 948.264 kb on - strand, within aac at 948.325 kb on + strand, within aac at 948.333 kb on + strand, within aac at 948.338 kb on + strand, within aac at 948.387 kb on - strand, within aac at 948.389 kb on - strand, within aac at 948.505 kb on + strand, within aac at 948.566 kb on - strand, within aac at 948.596 kb on + strand, within aac at 948.604 kb on - strand, within aac at 948.671 kb on - strand, within aac at 948.708 kb on + strand at 948.708 kb on + strand at 948.708 kb on + strand at 948.714 kb on + strand at 948.800 kb on + strand at 948.800 kb on + strand at 948.852 kb on + strand at 948.869 kb on - strand at 948.885 kb on + strand at 948.893 kb on - strand at 948.894 kb on + strand at 948.946 kb on + strand at 949.058 kb on + strand at 949.418 kb on + strand at 949.418 kb on + strand at 949.418 kb on + strand at 949.418 kb on + strand at 949.418 kb on + strand at 949.426 kb on - strand at 949.471 kb on - strand at 949.597 kb on - strand, within SO0919 at 949.597 kb on - strand, within SO0919 at 949.607 kb on - strand, within SO0919 at 949.773 kb on - strand, within SO0919 at 949.773 kb on - strand, within SO0919 at 949.773 kb on - strand, within SO0919 at 949.807 kb on + strand, within SO0919 at 949.875 kb on - strand, within SO0919
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 945,391 - -0.0 945,391 - +0.2 945,615 - +0.2 945,645 + SO0917 0.15 -1.4 945,653 - SO0917 0.16 +0.4 945,695 + SO0917 0.24 -0.1 945,695 + SO0917 0.24 -0.7 945,695 + SO0917 0.24 +0.5 945,721 + SO0917 0.29 +1.7 945,721 + SO0917 0.29 +0.9 945,721 + SO0917 0.29 +0.5 945,769 + SO0917 0.38 -2.6 945,769 + SO0917 0.38 +0.1 945,777 - SO0917 0.39 +0.0 945,801 - SO0917 0.44 +0.7 945,980 - SO0917 0.77 +0.5 945,980 - SO0917 0.77 -2.2 946,161 + -0.9 946,161 + +3.4 946,271 + -0.9 946,274 + +1.5 946,495 + +0.1 946,502 + +0.8 946,683 - aac SO0918 0.12 +0.2 946,719 + aac SO0918 0.13 +0.2 946,726 + aac SO0918 0.13 +1.2 946,727 - aac SO0918 0.13 +0.6 946,815 - aac SO0918 0.17 +0.7 946,829 + aac SO0918 0.17 -1.2 946,903 - aac SO0918 0.20 -0.7 946,920 + aac SO0918 0.21 -0.4 946,933 - aac SO0918 0.21 -0.4 946,986 - aac SO0918 0.23 -1.2 947,071 - aac SO0918 0.27 -0.2 947,136 + aac SO0918 0.29 -1.5 947,180 + aac SO0918 0.31 -0.5 947,188 - aac SO0918 0.31 +0.1 947,188 - aac SO0918 0.31 +0.4 947,353 - aac SO0918 0.38 +0.5 947,374 + aac SO0918 0.38 +0.5 947,375 - aac SO0918 0.38 -0.9 947,414 + aac SO0918 0.40 -2.3 947,414 + aac SO0918 0.40 -0.3 947,414 + aac SO0918 0.40 +0.8 947,422 - aac SO0918 0.40 -0.7 947,422 - aac SO0918 0.40 +0.4 947,613 - aac SO0918 0.48 -0.5 947,659 + aac SO0918 0.50 -0.2 947,832 + aac SO0918 0.56 +1.2 947,832 + aac SO0918 0.56 +1.5 947,838 + aac SO0918 0.57 +1.0 947,838 + aac SO0918 0.57 -0.5 947,849 + aac SO0918 0.57 +0.9 947,929 - aac SO0918 0.60 +0.8 947,929 - aac SO0918 0.60 -0.6 948,133 + aac SO0918 0.68 -0.5 948,211 + aac SO0918 0.71 -2.4 948,219 - aac SO0918 0.71 +2.4 948,219 - aac SO0918 0.71 +0.3 948,264 - aac SO0918 0.73 -0.0 948,264 - aac SO0918 0.73 -0.8 948,264 - aac SO0918 0.73 -0.4 948,325 + aac SO0918 0.75 -0.6 948,333 + aac SO0918 0.76 -1.8 948,338 + aac SO0918 0.76 +0.7 948,387 - aac SO0918 0.78 -2.4 948,389 - aac SO0918 0.78 -1.2 948,505 + aac SO0918 0.82 -0.7 948,566 - aac SO0918 0.85 +1.0 948,596 + aac SO0918 0.86 -0.2 948,604 - aac SO0918 0.86 +1.4 948,671 - aac SO0918 0.89 +0.8 948,708 + +0.2 948,708 + +0.5 948,708 + +0.4 948,714 + +0.8 948,800 + -0.1 948,800 + +0.5 948,852 + +0.5 948,869 - +1.0 948,885 + +1.6 948,893 - +1.1 948,894 + -1.2 948,946 + -0.9 949,058 + -0.6 949,418 + +0.8 949,418 + -0.0 949,418 + +0.2 949,418 + +0.1 949,418 + -0.7 949,426 - -0.8 949,471 - -1.4 949,597 - SO0919 0.16 -1.3 949,597 - SO0919 0.16 +0.5 949,607 - SO0919 0.17 -0.5 949,773 - SO0919 0.30 -1.1 949,773 - SO0919 0.30 -0.7 949,773 - SO0919 0.30 -0.3 949,807 + SO0919 0.33 -1.2 949,875 - SO0919 0.38 -1.5
Or see this region's nucleotide sequence