Strain Fitness in Shewanella oneidensis MR-1 around SO0545

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0544 and SO0544.1 overlap by 4 nucleotidesSO0544.1 and SO0545 are separated by 3 nucleotidesSO0545 and rimK-1 are separated by 151 nucleotides SO0544: SO0544 - sensory box histidine kinase (NCBI ptt file), at 564,464 to 566,617 SO0544 SO0544.1: SO0544.1 - hypothetical cheY-homologous receiver domain protein (NCBI ptt file), at 566,614 to 567,048 SO0544.1 SO0545: SO0545 - response regulator (NCBI ptt file), at 567,052 to 568,779 SO0545 SO0546: rimK-1 - ribosomal protein S6 modification protein (NCBI ptt file), at 568,931 to 569,836 rimK-1 Position (kb) 567 568 569Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 566.086 kb on - strand, within SO0544at 566.175 kb on + strand, within SO0544at 566.329 kb on - strand, within SO0544at 566.335 kb on - strand, within SO0544at 566.342 kb on - strand, within SO0544at 566.393 kb on + strand, within SO0544at 566.402 kb on + strandat 566.454 kb on + strandat 566.486 kb on + strandat 566.495 kb on - strandat 566.691 kb on - strand, within SO0544.1at 566.722 kb on + strand, within SO0544.1at 566.723 kb on - strand, within SO0544.1at 566.752 kb on - strand, within SO0544.1at 566.887 kb on - strand, within SO0544.1at 566.888 kb on + strand, within SO0544.1at 566.892 kb on - strand, within SO0544.1at 566.903 kb on + strand, within SO0544.1at 566.914 kb on + strand, within SO0544.1at 566.914 kb on + strand, within SO0544.1at 566.922 kb on - strand, within SO0544.1at 566.925 kb on + strand, within SO0544.1at 567.026 kb on + strandat 567.041 kb on + strandat 567.041 kb on + strandat 567.049 kb on - strandat 567.134 kb on + strandat 567.134 kb on + strandat 567.170 kb on + strandat 567.170 kb on + strandat 567.239 kb on + strand, within SO0545at 567.239 kb on + strand, within SO0545at 567.239 kb on + strand, within SO0545at 567.239 kb on + strand, within SO0545at 567.239 kb on + strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.330 kb on + strand, within SO0545at 567.330 kb on + strand, within SO0545at 567.330 kb on + strand, within SO0545at 567.439 kb on + strand, within SO0545at 567.515 kb on + strand, within SO0545at 567.523 kb on - strand, within SO0545at 567.556 kb on - strand, within SO0545at 567.679 kb on + strand, within SO0545at 567.679 kb on + strand, within SO0545at 567.679 kb on + strand, within SO0545at 567.687 kb on - strand, within SO0545at 567.687 kb on - strand, within SO0545at 567.689 kb on + strand, within SO0545at 567.786 kb on + strand, within SO0545at 567.842 kb on - strand, within SO0545at 567.874 kb on + strand, within SO0545at 567.938 kb on + strand, within SO0545at 567.980 kb on - strand, within SO0545at 568.022 kb on + strand, within SO0545at 568.038 kb on + strand, within SO0545at 568.045 kb on - strand, within SO0545at 568.086 kb on - strand, within SO0545at 568.196 kb on - strand, within SO0545at 568.222 kb on - strand, within SO0545at 568.225 kb on + strand, within SO0545at 568.230 kb on + strand, within SO0545at 568.230 kb on + strand, within SO0545at 568.238 kb on - strand, within SO0545at 568.313 kb on + strand, within SO0545at 568.352 kb on + strand, within SO0545at 568.352 kb on + strand, within SO0545at 568.360 kb on - strand, within SO0545at 568.360 kb on - strand, within SO0545at 568.360 kb on - strand, within SO0545at 568.360 kb on - strand, within SO0545at 568.436 kb on + strand, within SO0545at 568.590 kb on - strand, within SO0545at 568.597 kb on + strand, within SO0545at 568.599 kb on + strand, within SO0545at 568.616 kb on + strandat 568.810 kb on - strandat 568.810 kb on - strandat 568.810 kb on - strandat 568.837 kb on + strandat 568.837 kb on + strandat 568.837 kb on + strandat 568.850 kb on - strandat 568.855 kb on - strandat 568.860 kb on - strandat 568.860 kb on - strandat 568.871 kb on + strandat 568.916 kb on - strandat 568.916 kb on - strandat 568.916 kb on - strandat 568.966 kb on + strandat 568.974 kb on - strandat 568.986 kb on - strandat 569.229 kb on + strand, within rimK-1at 569.261 kb on + strand, within rimK-1at 569.267 kb on + strand, within rimK-1at 569.361 kb on + strand, within rimK-1at 569.364 kb on - strand, within rimK-1at 569.373 kb on + strand, within rimK-1at 569.507 kb on - strand, within rimK-1at 569.572 kb on + strand, within rimK-1at 569.607 kb on + strand, within rimK-1at 569.615 kb on - strand, within rimK-1at 569.686 kb on + strand, within rimK-1at 569.703 kb on + strand, within rimK-1

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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566,086 - SO0544 0.75 -0.6
566,175 + SO0544 0.79 +0.3
566,329 - SO0544 0.87 +2.1
566,335 - SO0544 0.87 +1.5
566,342 - SO0544 0.87 -0.0
566,393 + SO0544 0.90 -2.5
566,402 + +1.0
566,454 + -0.5
566,486 + +0.8
566,495 - +1.8
566,691 - SO0544.1 0.18 +0.0
566,722 + SO0544.1 0.25 +0.8
566,723 - SO0544.1 0.25 -3.1
566,752 - SO0544.1 0.32 +0.4
566,887 - SO0544.1 0.63 +0.8
566,888 + SO0544.1 0.63 -1.2
566,892 - SO0544.1 0.64 +0.2
566,903 + SO0544.1 0.66 -0.3
566,914 + SO0544.1 0.69 +1.5
566,914 + SO0544.1 0.69 +1.3
566,922 - SO0544.1 0.71 +0.4
566,925 + SO0544.1 0.71 +0.7
567,026 + -1.1
567,041 + +0.6
567,041 + -2.1
567,049 - +0.7
567,134 + +1.4
567,134 + -0.8
567,170 + -0.5
567,170 + -0.0
567,239 + SO0545 0.11 +1.2
567,239 + SO0545 0.11 -0.9
567,239 + SO0545 0.11 -0.1
567,239 + SO0545 0.11 +0.7
567,239 + SO0545 0.11 +0.6
567,247 - SO0545 0.11 +0.2
567,247 - SO0545 0.11 +1.8
567,247 - SO0545 0.11 -0.5
567,247 - SO0545 0.11 +0.6
567,247 - SO0545 0.11 +0.4
567,247 - SO0545 0.11 -0.4
567,247 - SO0545 0.11 +2.0
567,247 - SO0545 0.11 +0.5
567,247 - SO0545 0.11 -0.3
567,247 - SO0545 0.11 +1.5
567,247 - SO0545 0.11 +0.2
567,330 + SO0545 0.16 +0.3
567,330 + SO0545 0.16 -1.0
567,330 + SO0545 0.16 -2.5
567,439 + SO0545 0.22 +1.3
567,515 + SO0545 0.27 -2.0
567,523 - SO0545 0.27 +0.3
567,556 - SO0545 0.29 +2.4
567,679 + SO0545 0.36 +2.5
567,679 + SO0545 0.36 +2.0
567,679 + SO0545 0.36 +1.1
567,687 - SO0545 0.37 +0.5
567,687 - SO0545 0.37 +0.2
567,689 + SO0545 0.37 +0.4
567,786 + SO0545 0.42 -1.4
567,842 - SO0545 0.46 +0.2
567,874 + SO0545 0.48 +0.2
567,938 + SO0545 0.51 +1.6
567,980 - SO0545 0.54 -1.5
568,022 + SO0545 0.56 -0.3
568,038 + SO0545 0.57 +1.0
568,045 - SO0545 0.57 +2.9
568,086 - SO0545 0.60 -0.3
568,196 - SO0545 0.66 +0.3
568,222 - SO0545 0.68 -0.0
568,225 + SO0545 0.68 +1.3
568,230 + SO0545 0.68 +1.6
568,230 + SO0545 0.68 -0.3
568,238 - SO0545 0.69 -0.5
568,313 + SO0545 0.73 +0.2
568,352 + SO0545 0.75 +0.7
568,352 + SO0545 0.75 +0.2
568,360 - SO0545 0.76 +1.3
568,360 - SO0545 0.76 +0.0
568,360 - SO0545 0.76 +3.1
568,360 - SO0545 0.76 -1.2
568,436 + SO0545 0.80 +0.2
568,590 - SO0545 0.89 -0.5
568,597 + SO0545 0.89 -0.9
568,599 + SO0545 0.90 +1.4
568,616 + -1.8
568,810 - +2.1
568,810 - +3.1
568,810 - +1.4
568,837 + -0.4
568,837 + -0.0
568,837 + -1.6
568,850 - -2.6
568,855 - -2.6
568,860 - -0.7
568,860 - +1.7
568,871 + +2.1
568,916 - +0.8
568,916 - +0.1
568,916 - +0.1
568,966 + +1.0
568,974 - +0.2
568,986 - -0.2
569,229 + rimK-1 SO0546 0.33 +0.7
569,261 + rimK-1 SO0546 0.36 -3.1
569,267 + rimK-1 SO0546 0.37 -1.4
569,361 + rimK-1 SO0546 0.47 -0.8
569,364 - rimK-1 SO0546 0.48 +4.0
569,373 + rimK-1 SO0546 0.49 -0.3
569,507 - rimK-1 SO0546 0.64 -1.7
569,572 + rimK-1 SO0546 0.71 -0.4
569,607 + rimK-1 SO0546 0.75 -0.9
569,615 - rimK-1 SO0546 0.75 -2.3
569,686 + rimK-1 SO0546 0.83 -1.3
569,703 + rimK-1 SO0546 0.85 +0.5

Or see this region's nucleotide sequence