Strain Fitness in Shewanella oneidensis MR-1 around SO0202

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO_0201 and SO0202 are separated by 520 nucleotidesSO0202 and SO0203 are separated by 46 nucleotidesSO0203 and SO0204 are separated by 135 nucleotides SO_0201: SO_0201 - no description, at 209,586 to 210,287 _0201 SO0202: SO0202 - conserved hypothetical protein (NCBI ptt file), at 210,808 to 211,326 SO0202 SO0203: SO0203 - hypothetical protein (NCBI ptt file), at 211,373 to 212,089 SO0203 SO0204: SO0204 - hypothetical protein (NCBI ptt file), at 212,225 to 212,884 SO0204 Position (kb) 210 211 212Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 209.824 kb on + strand, within SO_0201at 209.832 kb on - strand, within SO_0201at 209.832 kb on - strand, within SO_0201at 209.887 kb on + strand, within SO_0201at 209.960 kb on + strand, within SO_0201at 209.997 kb on + strand, within SO_0201at 209.997 kb on + strand, within SO_0201at 210.005 kb on - strand, within SO_0201at 210.005 kb on - strand, within SO_0201at 210.016 kb on + strand, within SO_0201at 210.016 kb on + strand, within SO_0201at 210.016 kb on + strand, within SO_0201at 210.016 kb on + strand, within SO_0201at 210.024 kb on - strand, within SO_0201at 210.024 kb on - strand, within SO_0201at 210.024 kb on - strand, within SO_0201at 210.160 kb on + strand, within SO_0201at 210.171 kb on + strand, within SO_0201at 210.276 kb on + strandat 210.284 kb on - strandat 210.339 kb on + strandat 210.340 kb on + strandat 210.345 kb on - strandat 210.350 kb on + strandat 210.364 kb on + strandat 210.429 kb on + strandat 210.440 kb on + strandat 210.512 kb on - strandat 210.542 kb on - strandat 210.544 kb on + strandat 210.560 kb on + strandat 210.623 kb on + strandat 210.631 kb on - strandat 210.643 kb on - strandat 210.734 kb on - strandat 210.759 kb on + strandat 210.767 kb on - strandat 210.767 kb on - strandat 210.767 kb on - strandat 210.772 kb on + strandat 210.772 kb on + strandat 210.849 kb on + strandat 210.903 kb on + strand, within SO0202at 210.903 kb on + strand, within SO0202at 210.998 kb on + strand, within SO0202at 211.036 kb on - strand, within SO0202at 211.064 kb on + strand, within SO0202at 211.113 kb on - strand, within SO0202at 211.231 kb on + strand, within SO0202at 211.239 kb on - strand, within SO0202at 211.239 kb on - strand, within SO0202at 211.241 kb on + strand, within SO0202at 211.320 kb on + strandat 211.328 kb on - strandat 211.341 kb on + strandat 211.351 kb on + strandat 211.359 kb on - strandat 211.359 kb on - strandat 211.439 kb on - strandat 211.439 kb on - strandat 211.489 kb on + strand, within SO0203at 211.490 kb on - strand, within SO0203at 211.505 kb on - strand, within SO0203at 211.514 kb on + strand, within SO0203at 211.566 kb on + strand, within SO0203at 211.568 kb on - strand, within SO0203at 211.568 kb on - strand, within SO0203at 211.633 kb on + strand, within SO0203at 211.633 kb on + strand, within SO0203at 211.641 kb on - strand, within SO0203at 211.666 kb on + strand, within SO0203at 211.674 kb on - strand, within SO0203at 211.699 kb on + strand, within SO0203at 211.699 kb on + strand, within SO0203at 211.704 kb on + strand, within SO0203at 211.704 kb on + strand, within SO0203at 211.707 kb on - strand, within SO0203at 211.707 kb on - strand, within SO0203at 211.726 kb on + strand, within SO0203at 211.732 kb on - strand, within SO0203at 211.778 kb on - strand, within SO0203at 211.804 kb on - strand, within SO0203at 211.804 kb on - strand, within SO0203at 211.874 kb on + strand, within SO0203at 211.879 kb on + strand, within SO0203at 211.882 kb on - strand, within SO0203at 211.922 kb on + strand, within SO0203at 211.933 kb on + strand, within SO0203at 211.973 kb on - strand, within SO0203at 212.027 kb on + strandat 212.027 kb on + strandat 212.028 kb on - strandat 212.028 kb on - strandat 212.079 kb on - strandat 212.114 kb on + strandat 212.138 kb on + strandat 212.138 kb on + strandat 212.146 kb on - strandat 212.186 kb on + strandat 212.189 kb on + strandat 212.189 kb on + strandat 212.189 kb on + strandat 212.197 kb on - strandat 212.197 kb on - strandat 212.197 kb on - strandat 212.208 kb on - strandat 212.235 kb on - strandat 212.235 kb on - strandat 212.282 kb on + strandat 212.283 kb on + strandat 212.309 kb on + strand, within SO0204at 212.322 kb on + strand, within SO0204

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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209,824 + SO_0201 0.34 -1.3
209,832 - SO_0201 0.35 +0.6
209,832 - SO_0201 0.35 +0.8
209,887 + SO_0201 0.43 -0.1
209,960 + SO_0201 0.53 -1.9
209,997 + SO_0201 0.59 +0.2
209,997 + SO_0201 0.59 +1.9
210,005 - SO_0201 0.60 +0.5
210,005 - SO_0201 0.60 -1.9
210,016 + SO_0201 0.61 +0.3
210,016 + SO_0201 0.61 -1.8
210,016 + SO_0201 0.61 +0.8
210,016 + SO_0201 0.61 +1.1
210,024 - SO_0201 0.62 +0.0
210,024 - SO_0201 0.62 -0.1
210,024 - SO_0201 0.62 -0.2
210,160 + SO_0201 0.82 +1.4
210,171 + SO_0201 0.83 -0.5
210,276 + +2.0
210,284 - -1.3
210,339 + +0.6
210,340 + -2.2
210,345 - -0.4
210,350 + -1.5
210,364 + -1.8
210,429 + +0.2
210,440 + -3.3
210,512 - -0.0
210,542 - +0.4
210,544 + -0.1
210,560 + -0.3
210,623 + -0.5
210,631 - -2.9
210,643 - -0.1
210,734 - +1.5
210,759 + +0.7
210,767 - +0.3
210,767 - +0.4
210,767 - +0.3
210,772 + -1.5
210,772 + +1.5
210,849 + -0.0
210,903 + SO0202 0.18 +4.2
210,903 + SO0202 0.18 -0.4
210,998 + SO0202 0.37 +1.3
211,036 - SO0202 0.44 -1.5
211,064 + SO0202 0.49 -1.2
211,113 - SO0202 0.59 +0.1
211,231 + SO0202 0.82 -1.3
211,239 - SO0202 0.83 +1.9
211,239 - SO0202 0.83 -2.4
211,241 + SO0202 0.83 +0.4
211,320 + +2.2
211,328 - +1.9
211,341 + +4.0
211,351 + -0.3
211,359 - -1.5
211,359 - -2.3
211,439 - +0.3
211,439 - -0.2
211,489 + SO0203 0.16 -1.0
211,490 - SO0203 0.16 -0.4
211,505 - SO0203 0.18 +0.0
211,514 + SO0203 0.20 +1.0
211,566 + SO0203 0.27 -0.4
211,568 - SO0203 0.27 +0.4
211,568 - SO0203 0.27 +0.3
211,633 + SO0203 0.36 -1.0
211,633 + SO0203 0.36 -0.8
211,641 - SO0203 0.37 -0.4
211,666 + SO0203 0.41 +2.4
211,674 - SO0203 0.42 +0.1
211,699 + SO0203 0.45 +2.7
211,699 + SO0203 0.45 +0.1
211,704 + SO0203 0.46 +1.1
211,704 + SO0203 0.46 -0.7
211,707 - SO0203 0.47 -2.1
211,707 - SO0203 0.47 -0.8
211,726 + SO0203 0.49 -2.6
211,732 - SO0203 0.50 +0.1
211,778 - SO0203 0.56 +0.7
211,804 - SO0203 0.60 -0.5
211,804 - SO0203 0.60 -0.6
211,874 + SO0203 0.70 -0.9
211,879 + SO0203 0.71 -1.8
211,882 - SO0203 0.71 +0.9
211,922 + SO0203 0.77 -0.1
211,933 + SO0203 0.78 +0.4
211,973 - SO0203 0.84 -1.4
212,027 + +0.3
212,027 + -0.7
212,028 - +1.3
212,028 - -0.2
212,079 - -0.9
212,114 + +2.8
212,138 + -3.5
212,138 + -2.2
212,146 - +1.0
212,186 + -0.4
212,189 + -0.1
212,189 + -3.5
212,189 + -0.4
212,197 - +0.6
212,197 - +1.5
212,197 - +1.2
212,208 - +0.0
212,235 - -1.5
212,235 - -0.2
212,282 + -1.8
212,283 + -0.1
212,309 + SO0204 0.13 -0.5
212,322 + SO0204 0.15 +0.2

Or see this region's nucleotide sequence