Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0784

Experiment: LB 30C timecourse1 timepoint 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0783 and Psest_0784 are separated by 126 nucleotidesPsest_0784 and Psest_0785 are separated by 108 nucleotides Psest_0783: Psest_0783 - PAS domain S-box, at 852,318 to 856,490 _0783 Psest_0784: Psest_0784 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 856,617 to 857,993 _0784 Psest_0785: Psest_0785 - Thioredoxin reductase, at 858,102 to 859,049 _0785 Position (kb) 856 857 858Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 855.619 kb on + strand, within Psest_0783at 855.620 kb on - strand, within Psest_0783at 855.620 kb on - strand, within Psest_0783at 855.620 kb on - strand, within Psest_0783at 855.620 kb on - strand, within Psest_0783at 855.692 kb on - strand, within Psest_0783at 855.692 kb on - strand, within Psest_0783at 855.692 kb on - strand, within Psest_0783at 855.774 kb on - strand, within Psest_0783at 856.065 kb on + strand, within Psest_0783at 856.065 kb on + strand, within Psest_0783at 856.065 kb on + strand, within Psest_0783at 856.066 kb on - strand, within Psest_0783at 856.085 kb on + strandat 856.171 kb on + strandat 856.171 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.214 kb on - strandat 856.214 kb on - strandat 856.214 kb on - strandat 856.214 kb on - strandat 856.214 kb on - strandat 856.214 kb on - strandat 856.214 kb on - strandat 856.214 kb on - strandat 856.214 kb on - strandat 856.581 kb on - strandat 856.581 kb on - strandat 856.581 kb on - strandat 856.601 kb on + strandat 856.666 kb on + strandat 856.666 kb on + strandat 856.667 kb on - strandat 856.667 kb on - strandat 856.667 kb on - strandat 856.667 kb on - strandat 856.667 kb on - strandat 857.005 kb on + strand, within Psest_0784at 857.006 kb on - strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.086 kb on + strand, within Psest_0784at 857.086 kb on + strand, within Psest_0784at 857.087 kb on - strand, within Psest_0784at 857.087 kb on - strand, within Psest_0784at 857.087 kb on - strand, within Psest_0784at 857.087 kb on - strand, within Psest_0784at 857.182 kb on + strand, within Psest_0784at 857.183 kb on - strand, within Psest_0784at 857.560 kb on + strand, within Psest_0784at 857.560 kb on + strand, within Psest_0784at 857.560 kb on + strand, within Psest_0784at 857.561 kb on - strand, within Psest_0784at 857.561 kb on - strand, within Psest_0784at 857.561 kb on - strand, within Psest_0784at 857.561 kb on - strand, within Psest_0784at 857.564 kb on - strand, within Psest_0784at 857.721 kb on + strand, within Psest_0784at 857.721 kb on + strand, within Psest_0784at 857.721 kb on + strand, within Psest_0784at 857.842 kb on + strand, within Psest_0784at 857.842 kb on + strand, within Psest_0784at 858.020 kb on - strandat 858.020 kb on - strandat 858.020 kb on - strandat 858.020 kb on - strandat 858.021 kb on + strandat 858.021 kb on + strandat 858.021 kb on + strandat 858.021 kb on + strandat 858.021 kb on + strandat 858.022 kb on - strandat 858.022 kb on - strandat 858.022 kb on - strandat 858.022 kb on - strandat 858.022 kb on - strandat 858.022 kb on - strandat 858.027 kb on + strandat 858.027 kb on + strandat 858.104 kb on - strandat 858.104 kb on - strandat 858.152 kb on + strandat 858.353 kb on - strand, within Psest_0785at 858.353 kb on - strand, within Psest_0785at 858.457 kb on + strand, within Psest_0785at 858.581 kb on - strand, within Psest_0785at 858.581 kb on - strand, within Psest_0785at 858.962 kb on - strandat 858.962 kb on - strandat 858.962 kb on - strandat 858.962 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 2
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855,619 + Psest_0783 0.79 +0.1
855,620 - Psest_0783 0.79 -0.2
855,620 - Psest_0783 0.79 -0.0
855,620 - Psest_0783 0.79 -0.7
855,620 - Psest_0783 0.79 -0.1
855,692 - Psest_0783 0.81 -0.3
855,692 - Psest_0783 0.81 -0.6
855,692 - Psest_0783 0.81 +0.2
855,774 - Psest_0783 0.83 +0.4
856,065 + Psest_0783 0.90 -0.5
856,065 + Psest_0783 0.90 -0.7
856,065 + Psest_0783 0.90 +1.0
856,066 - Psest_0783 0.90 +0.1
856,085 + +0.5
856,171 + -0.2
856,171 + -1.5
856,213 + +0.7
856,213 + +1.1
856,213 + +0.2
856,213 + -0.1
856,213 + -0.2
856,213 + +0.9
856,213 + +0.6
856,213 + +0.2
856,213 + -0.1
856,213 + +1.1
856,213 + -0.2
856,213 + +0.4
856,213 + +0.7
856,214 - +1.5
856,214 - +0.1
856,214 - -1.2
856,214 - +0.8
856,214 - -0.9
856,214 - -0.3
856,214 - -0.1
856,214 - +0.4
856,214 - +0.1
856,581 - -0.1
856,581 - +0.9
856,581 - -0.7
856,601 + +0.1
856,666 + -0.5
856,666 + -2.4
856,667 - +0.3
856,667 - +1.7
856,667 - +0.3
856,667 - +0.2
856,667 - -0.5
857,005 + Psest_0784 0.28 +0.7
857,006 - Psest_0784 0.28 +0.1
857,083 + Psest_0784 0.34 -0.9
857,083 + Psest_0784 0.34 -0.1
857,083 + Psest_0784 0.34 +1.5
857,083 + Psest_0784 0.34 +1.6
857,083 + Psest_0784 0.34 +0.0
857,083 + Psest_0784 0.34 +1.1
857,083 + Psest_0784 0.34 +1.8
857,083 + Psest_0784 0.34 +1.5
857,083 + Psest_0784 0.34 -0.3
857,083 + Psest_0784 0.34 +1.3
857,083 + Psest_0784 0.34 +1.7
857,083 + Psest_0784 0.34 +0.1
857,083 + Psest_0784 0.34 -0.8
857,083 + Psest_0784 0.34 +0.9
857,083 + Psest_0784 0.34 +2.1
857,083 + Psest_0784 0.34 +1.9
857,083 + Psest_0784 0.34 +0.4
857,083 + Psest_0784 0.34 -0.5
857,083 + Psest_0784 0.34 +0.5
857,083 + Psest_0784 0.34 +0.4
857,083 + Psest_0784 0.34 +1.1
857,084 - Psest_0784 0.34 +2.0
857,084 - Psest_0784 0.34 -0.0
857,084 - Psest_0784 0.34 -0.2
857,084 - Psest_0784 0.34 -0.3
857,084 - Psest_0784 0.34 -1.1
857,084 - Psest_0784 0.34 +1.9
857,084 - Psest_0784 0.34 +0.5
857,084 - Psest_0784 0.34 -1.5
857,084 - Psest_0784 0.34 +1.0
857,084 - Psest_0784 0.34 +0.9
857,084 - Psest_0784 0.34 +0.1
857,084 - Psest_0784 0.34 -0.4
857,084 - Psest_0784 0.34 +0.0
857,084 - Psest_0784 0.34 +0.9
857,084 - Psest_0784 0.34 -0.0
857,084 - Psest_0784 0.34 -2.8
857,084 - Psest_0784 0.34 +0.1
857,084 - Psest_0784 0.34 -1.7
857,086 + Psest_0784 0.34 +1.8
857,086 + Psest_0784 0.34 +0.1
857,087 - Psest_0784 0.34 +0.2
857,087 - Psest_0784 0.34 +1.0
857,087 - Psest_0784 0.34 +1.1
857,087 - Psest_0784 0.34 +0.5
857,182 + Psest_0784 0.41 -0.3
857,183 - Psest_0784 0.41 +1.3
857,560 + Psest_0784 0.68 +0.5
857,560 + Psest_0784 0.68 -0.0
857,560 + Psest_0784 0.68 +0.7
857,561 - Psest_0784 0.69 -1.7
857,561 - Psest_0784 0.69 +2.7
857,561 - Psest_0784 0.69 +0.2
857,561 - Psest_0784 0.69 +1.1
857,564 - Psest_0784 0.69 -0.5
857,721 + Psest_0784 0.80 +0.8
857,721 + Psest_0784 0.80 +0.0
857,721 + Psest_0784 0.80 +0.8
857,842 + Psest_0784 0.89 -0.5
857,842 + Psest_0784 0.89 +0.3
858,020 - +0.9
858,020 - +0.5
858,020 - +0.1
858,020 - +1.4
858,021 + +2.7
858,021 + +1.1
858,021 + -1.1
858,021 + +1.0
858,021 + +1.8
858,022 - +0.8
858,022 - -0.1
858,022 - +0.9
858,022 - -2.2
858,022 - -1.2
858,022 - +2.6
858,027 + +0.4
858,027 + -0.5
858,104 - +0.6
858,104 - +2.1
858,152 + -0.5
858,353 - Psest_0785 0.26 +0.4
858,353 - Psest_0785 0.26 +1.8
858,457 + Psest_0785 0.37 +0.1
858,581 - Psest_0785 0.51 +1.0
858,581 - Psest_0785 0.51 +0.3
858,962 - +0.4
858,962 - +1.7
858,962 - -0.8
858,962 - +0.4

Or see this region's nucleotide sequence