Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0783

Experiment: LB 30C timecourse1 timepoint 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0782 and Psest_0783 are separated by 107 nucleotidesPsest_0783 and Psest_0784 are separated by 126 nucleotides Psest_0782: Psest_0782 - Transcriptional regulator of aromatic amino acids metabolism, at 850,651 to 852,210 _0782 Psest_0783: Psest_0783 - PAS domain S-box, at 852,318 to 856,490 _0783 Psest_0784: Psest_0784 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 856,617 to 857,993 _0784 Position (kb) 852 853 854 855 856 857Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 851.665 kb on + strand, within Psest_0782at 851.665 kb on + strand, within Psest_0782at 851.665 kb on + strand, within Psest_0782at 851.666 kb on - strand, within Psest_0782at 851.666 kb on - strand, within Psest_0782at 851.666 kb on - strand, within Psest_0782at 851.746 kb on + strand, within Psest_0782at 851.776 kb on - strand, within Psest_0782at 852.793 kb on + strand, within Psest_0783at 852.793 kb on + strand, within Psest_0783at 853.091 kb on - strand, within Psest_0783at 853.091 kb on - strand, within Psest_0783at 853.091 kb on - strand, within Psest_0783at 853.298 kb on + strand, within Psest_0783at 853.298 kb on + strand, within Psest_0783at 853.298 kb on + strand, within Psest_0783at 853.299 kb on - strand, within Psest_0783at 853.540 kb on - strand, within Psest_0783at 853.681 kb on + strand, within Psest_0783at 853.681 kb on + strand, within Psest_0783at 853.681 kb on + strand, within Psest_0783at 853.682 kb on - strand, within Psest_0783at 853.682 kb on - strand, within Psest_0783at 853.682 kb on - strand, within Psest_0783at 853.682 kb on - strand, within Psest_0783at 853.682 kb on - strand, within Psest_0783at 853.795 kb on + strand, within Psest_0783at 853.908 kb on - strand, within Psest_0783at 853.948 kb on + strand, within Psest_0783at 853.948 kb on + strand, within Psest_0783at 853.948 kb on + strand, within Psest_0783at 853.948 kb on + strand, within Psest_0783at 854.028 kb on + strand, within Psest_0783at 854.028 kb on + strand, within Psest_0783at 854.028 kb on + strand, within Psest_0783at 854.029 kb on - strand, within Psest_0783at 854.029 kb on - strand, within Psest_0783at 854.132 kb on + strand, within Psest_0783at 854.133 kb on - strand, within Psest_0783at 854.524 kb on + strand, within Psest_0783at 854.524 kb on + strand, within Psest_0783at 854.525 kb on - strand, within Psest_0783at 854.575 kb on + strand, within Psest_0783at 854.575 kb on + strand, within Psest_0783at 854.575 kb on + strand, within Psest_0783at 854.575 kb on + strand, within Psest_0783at 854.575 kb on + strand, within Psest_0783at 854.576 kb on - strand, within Psest_0783at 854.576 kb on - strand, within Psest_0783at 854.576 kb on - strand, within Psest_0783at 854.576 kb on - strand, within Psest_0783at 854.576 kb on - strand, within Psest_0783at 854.576 kb on - strand, within Psest_0783at 854.576 kb on - strand, within Psest_0783at 854.576 kb on - strand, within Psest_0783at 854.576 kb on - strand, within Psest_0783at 854.576 kb on - strand, within Psest_0783at 854.576 kb on - strand, within Psest_0783at 854.647 kb on + strand, within Psest_0783at 854.647 kb on + strand, within Psest_0783at 854.648 kb on - strand, within Psest_0783at 854.725 kb on + strand, within Psest_0783at 854.725 kb on + strand, within Psest_0783at 854.726 kb on - strand, within Psest_0783at 854.804 kb on - strand, within Psest_0783at 854.962 kb on + strand, within Psest_0783at 854.962 kb on + strand, within Psest_0783at 854.962 kb on + strand, within Psest_0783at 854.962 kb on + strand, within Psest_0783at 854.963 kb on - strand, within Psest_0783at 854.963 kb on - strand, within Psest_0783at 854.979 kb on - strand, within Psest_0783at 855.106 kb on + strand, within Psest_0783at 855.106 kb on + strand, within Psest_0783at 855.106 kb on + strand, within Psest_0783at 855.106 kb on + strand, within Psest_0783at 855.106 kb on + strand, within Psest_0783at 855.106 kb on + strand, within Psest_0783at 855.106 kb on + strand, within Psest_0783at 855.106 kb on + strand, within Psest_0783at 855.107 kb on - strand, within Psest_0783at 855.107 kb on - strand, within Psest_0783at 855.107 kb on - strand, within Psest_0783at 855.107 kb on - strand, within Psest_0783at 855.107 kb on - strand, within Psest_0783at 855.107 kb on - strand, within Psest_0783at 855.107 kb on - strand, within Psest_0783at 855.241 kb on + strand, within Psest_0783at 855.412 kb on + strand, within Psest_0783at 855.412 kb on + strand, within Psest_0783at 855.619 kb on + strand, within Psest_0783at 855.620 kb on - strand, within Psest_0783at 855.620 kb on - strand, within Psest_0783at 855.620 kb on - strand, within Psest_0783at 855.620 kb on - strand, within Psest_0783at 855.692 kb on - strand, within Psest_0783at 855.692 kb on - strand, within Psest_0783at 855.692 kb on - strand, within Psest_0783at 855.774 kb on - strand, within Psest_0783at 856.065 kb on + strand, within Psest_0783at 856.065 kb on + strand, within Psest_0783at 856.065 kb on + strand, within Psest_0783at 856.066 kb on - strand, within Psest_0783at 856.085 kb on + strandat 856.171 kb on + strandat 856.171 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.213 kb on + strandat 856.214 kb on - strandat 856.214 kb on - strandat 856.214 kb on - strandat 856.214 kb on - strandat 856.214 kb on - strandat 856.214 kb on - strandat 856.214 kb on - strandat 856.214 kb on - strandat 856.214 kb on - strandat 856.581 kb on - strandat 856.581 kb on - strandat 856.581 kb on - strandat 856.601 kb on + strandat 856.666 kb on + strandat 856.666 kb on + strandat 856.667 kb on - strandat 856.667 kb on - strandat 856.667 kb on - strandat 856.667 kb on - strandat 856.667 kb on - strandat 857.005 kb on + strand, within Psest_0784at 857.006 kb on - strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.083 kb on + strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.084 kb on - strand, within Psest_0784at 857.086 kb on + strand, within Psest_0784at 857.086 kb on + strand, within Psest_0784at 857.087 kb on - strand, within Psest_0784at 857.087 kb on - strand, within Psest_0784at 857.087 kb on - strand, within Psest_0784at 857.087 kb on - strand, within Psest_0784at 857.182 kb on + strand, within Psest_0784at 857.183 kb on - strand, within Psest_0784

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 2
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851,665 + Psest_0782 0.65 +1.8
851,665 + Psest_0782 0.65 +0.8
851,665 + Psest_0782 0.65 +1.1
851,666 - Psest_0782 0.65 -0.9
851,666 - Psest_0782 0.65 -0.9
851,666 - Psest_0782 0.65 -0.1
851,746 + Psest_0782 0.70 +0.5
851,776 - Psest_0782 0.72 -0.2
852,793 + Psest_0783 0.11 +0.8
852,793 + Psest_0783 0.11 +0.2
853,091 - Psest_0783 0.19 +0.8
853,091 - Psest_0783 0.19 -0.9
853,091 - Psest_0783 0.19 -1.0
853,298 + Psest_0783 0.23 -3.0
853,298 + Psest_0783 0.23 +0.4
853,298 + Psest_0783 0.23 -0.0
853,299 - Psest_0783 0.24 +0.3
853,540 - Psest_0783 0.29 +1.1
853,681 + Psest_0783 0.33 +1.1
853,681 + Psest_0783 0.33 +1.4
853,681 + Psest_0783 0.33 +0.3
853,682 - Psest_0783 0.33 +1.4
853,682 - Psest_0783 0.33 -0.9
853,682 - Psest_0783 0.33 +0.2
853,682 - Psest_0783 0.33 -0.9
853,682 - Psest_0783 0.33 +1.1
853,795 + Psest_0783 0.35 -0.7
853,908 - Psest_0783 0.38 +0.4
853,948 + Psest_0783 0.39 +0.8
853,948 + Psest_0783 0.39 -0.5
853,948 + Psest_0783 0.39 +0.5
853,948 + Psest_0783 0.39 +0.1
854,028 + Psest_0783 0.41 +0.6
854,028 + Psest_0783 0.41 +0.9
854,028 + Psest_0783 0.41 +0.1
854,029 - Psest_0783 0.41 +0.4
854,029 - Psest_0783 0.41 +1.1
854,132 + Psest_0783 0.43 +0.8
854,133 - Psest_0783 0.43 +1.3
854,524 + Psest_0783 0.53 -1.5
854,524 + Psest_0783 0.53 -0.4
854,525 - Psest_0783 0.53 +0.1
854,575 + Psest_0783 0.54 +0.5
854,575 + Psest_0783 0.54 -1.9
854,575 + Psest_0783 0.54 -0.4
854,575 + Psest_0783 0.54 +0.3
854,575 + Psest_0783 0.54 +2.7
854,576 - Psest_0783 0.54 -1.6
854,576 - Psest_0783 0.54 +0.2
854,576 - Psest_0783 0.54 +0.7
854,576 - Psest_0783 0.54 +1.8
854,576 - Psest_0783 0.54 -0.8
854,576 - Psest_0783 0.54 +0.6
854,576 - Psest_0783 0.54 +0.3
854,576 - Psest_0783 0.54 -0.8
854,576 - Psest_0783 0.54 +0.6
854,576 - Psest_0783 0.54 -2.2
854,576 - Psest_0783 0.54 +0.2
854,647 + Psest_0783 0.56 +2.1
854,647 + Psest_0783 0.56 +1.1
854,648 - Psest_0783 0.56 +0.7
854,725 + Psest_0783 0.58 -1.2
854,725 + Psest_0783 0.58 +0.4
854,726 - Psest_0783 0.58 +0.3
854,804 - Psest_0783 0.60 +1.3
854,962 + Psest_0783 0.63 -1.6
854,962 + Psest_0783 0.63 +1.5
854,962 + Psest_0783 0.63 +0.2
854,962 + Psest_0783 0.63 +0.7
854,963 - Psest_0783 0.63 -0.2
854,963 - Psest_0783 0.63 -0.7
854,979 - Psest_0783 0.64 +0.2
855,106 + Psest_0783 0.67 +0.3
855,106 + Psest_0783 0.67 -0.2
855,106 + Psest_0783 0.67 +1.3
855,106 + Psest_0783 0.67 +1.5
855,106 + Psest_0783 0.67 +0.1
855,106 + Psest_0783 0.67 +1.2
855,106 + Psest_0783 0.67 +0.1
855,106 + Psest_0783 0.67 -1.1
855,107 - Psest_0783 0.67 -0.3
855,107 - Psest_0783 0.67 -0.4
855,107 - Psest_0783 0.67 +0.9
855,107 - Psest_0783 0.67 +1.7
855,107 - Psest_0783 0.67 +0.4
855,107 - Psest_0783 0.67 +1.7
855,107 - Psest_0783 0.67 -0.7
855,241 + Psest_0783 0.70 -0.6
855,412 + Psest_0783 0.74 +0.5
855,412 + Psest_0783 0.74 +1.0
855,619 + Psest_0783 0.79 +0.1
855,620 - Psest_0783 0.79 -0.2
855,620 - Psest_0783 0.79 -0.0
855,620 - Psest_0783 0.79 -0.7
855,620 - Psest_0783 0.79 -0.1
855,692 - Psest_0783 0.81 -0.3
855,692 - Psest_0783 0.81 -0.6
855,692 - Psest_0783 0.81 +0.2
855,774 - Psest_0783 0.83 +0.4
856,065 + Psest_0783 0.90 -0.5
856,065 + Psest_0783 0.90 -0.7
856,065 + Psest_0783 0.90 +1.0
856,066 - Psest_0783 0.90 +0.1
856,085 + +0.5
856,171 + -0.2
856,171 + -1.5
856,213 + +0.7
856,213 + +1.1
856,213 + +0.2
856,213 + -0.1
856,213 + -0.2
856,213 + +0.9
856,213 + +0.6
856,213 + +0.2
856,213 + -0.1
856,213 + +1.1
856,213 + -0.2
856,213 + +0.4
856,213 + +0.7
856,214 - +1.5
856,214 - +0.1
856,214 - -1.2
856,214 - +0.8
856,214 - -0.9
856,214 - -0.3
856,214 - -0.1
856,214 - +0.4
856,214 - +0.1
856,581 - -0.1
856,581 - +0.9
856,581 - -0.7
856,601 + +0.1
856,666 + -0.5
856,666 + -2.4
856,667 - +0.3
856,667 - +1.7
856,667 - +0.3
856,667 - +0.2
856,667 - -0.5
857,005 + Psest_0784 0.28 +0.7
857,006 - Psest_0784 0.28 +0.1
857,083 + Psest_0784 0.34 -0.9
857,083 + Psest_0784 0.34 -0.1
857,083 + Psest_0784 0.34 +1.5
857,083 + Psest_0784 0.34 +1.6
857,083 + Psest_0784 0.34 +0.0
857,083 + Psest_0784 0.34 +1.1
857,083 + Psest_0784 0.34 +1.8
857,083 + Psest_0784 0.34 +1.5
857,083 + Psest_0784 0.34 -0.3
857,083 + Psest_0784 0.34 +1.3
857,083 + Psest_0784 0.34 +1.7
857,083 + Psest_0784 0.34 +0.1
857,083 + Psest_0784 0.34 -0.8
857,083 + Psest_0784 0.34 +0.9
857,083 + Psest_0784 0.34 +2.1
857,083 + Psest_0784 0.34 +1.9
857,083 + Psest_0784 0.34 +0.4
857,083 + Psest_0784 0.34 -0.5
857,083 + Psest_0784 0.34 +0.5
857,083 + Psest_0784 0.34 +0.4
857,083 + Psest_0784 0.34 +1.1
857,084 - Psest_0784 0.34 +2.0
857,084 - Psest_0784 0.34 -0.0
857,084 - Psest_0784 0.34 -0.2
857,084 - Psest_0784 0.34 -0.3
857,084 - Psest_0784 0.34 -1.1
857,084 - Psest_0784 0.34 +1.9
857,084 - Psest_0784 0.34 +0.5
857,084 - Psest_0784 0.34 -1.5
857,084 - Psest_0784 0.34 +1.0
857,084 - Psest_0784 0.34 +0.9
857,084 - Psest_0784 0.34 +0.1
857,084 - Psest_0784 0.34 -0.4
857,084 - Psest_0784 0.34 +0.0
857,084 - Psest_0784 0.34 +0.9
857,084 - Psest_0784 0.34 -0.0
857,084 - Psest_0784 0.34 -2.8
857,084 - Psest_0784 0.34 +0.1
857,084 - Psest_0784 0.34 -1.7
857,086 + Psest_0784 0.34 +1.8
857,086 + Psest_0784 0.34 +0.1
857,087 - Psest_0784 0.34 +0.2
857,087 - Psest_0784 0.34 +1.0
857,087 - Psest_0784 0.34 +1.1
857,087 - Psest_0784 0.34 +0.5
857,182 + Psest_0784 0.41 -0.3
857,183 - Psest_0784 0.41 +1.3

Or see this region's nucleotide sequence