Experiment: LB 30C timecourse1 timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0547 and Psest_0548 overlap by 4 nucleotides Psest_0548 and Psest_0549 are separated by 163 nucleotides Psest_0549 and Psest_0550 are separated by 247 nucleotides
Psest_0547: Psest_0547 - Urease accessory protein UreF, at 601,629 to 602,321
_0547
Psest_0548: Psest_0548 - Urease accessory protein UreE, at 602,318 to 602,818
_0548
Psest_0549: Psest_0549 - Predicted acetyltransferase, at 602,982 to 603,485
_0549
Psest_0550: Psest_0550 - Predicted permease, DMT superfamily, at 603,733 to 604,605
_0550
Position (kb) 602
603
604 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 602.239 kb on + strand, within Psest_0547 at 602.239 kb on + strand, within Psest_0547 at 602.239 kb on + strand, within Psest_0547 at 602.240 kb on - strand, within Psest_0547 at 602.246 kb on - strand, within Psest_0547 at 602.327 kb on + strand at 602.356 kb on - strand at 602.484 kb on + strand, within Psest_0548 at 602.484 kb on + strand, within Psest_0548 at 602.484 kb on + strand, within Psest_0548 at 602.484 kb on + strand, within Psest_0548 at 602.485 kb on - strand, within Psest_0548 at 602.485 kb on - strand, within Psest_0548 at 602.485 kb on - strand, within Psest_0548 at 602.485 kb on - strand, within Psest_0548 at 602.485 kb on - strand, within Psest_0548 at 602.716 kb on + strand, within Psest_0548 at 602.754 kb on + strand, within Psest_0548 at 602.754 kb on + strand, within Psest_0548 at 602.755 kb on - strand, within Psest_0548 at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.883 kb on - strand at 602.883 kb on - strand at 602.883 kb on - strand at 602.945 kb on + strand at 602.945 kb on + strand at 602.946 kb on - strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.025 kb on + strand at 603.026 kb on - strand at 603.164 kb on + strand, within Psest_0549 at 603.316 kb on + strand, within Psest_0549 at 603.316 kb on + strand, within Psest_0549 at 603.316 kb on + strand, within Psest_0549 at 603.316 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.419 kb on - strand, within Psest_0549 at 603.419 kb on - strand, within Psest_0549 at 603.453 kb on - strand at 603.481 kb on + strand at 603.482 kb on - strand at 603.482 kb on - strand at 603.482 kb on - strand at 603.544 kb on + strand at 603.757 kb on + strand at 603.758 kb on - strand at 603.774 kb on - strand at 603.866 kb on - strand, within Psest_0550 at 603.866 kb on - strand, within Psest_0550 at 603.866 kb on - strand, within Psest_0550 at 604.222 kb on + strand, within Psest_0550 at 604.222 kb on + strand, within Psest_0550 at 604.222 kb on + strand, within Psest_0550 at 604.223 kb on - strand, within Psest_0550 at 604.266 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.456 kb on + strand, within Psest_0550
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 2 remove 602,239 + Psest_0547 0.88 +0.4 602,239 + Psest_0547 0.88 +0.6 602,239 + Psest_0547 0.88 +0.4 602,240 - Psest_0547 0.88 +0.2 602,246 - Psest_0547 0.89 +1.2 602,327 + -0.0 602,356 - -1.0 602,484 + Psest_0548 0.33 +0.5 602,484 + Psest_0548 0.33 +1.5 602,484 + Psest_0548 0.33 +0.8 602,484 + Psest_0548 0.33 +0.1 602,485 - Psest_0548 0.33 -0.2 602,485 - Psest_0548 0.33 -0.4 602,485 - Psest_0548 0.33 +0.6 602,485 - Psest_0548 0.33 +0.8 602,485 - Psest_0548 0.33 +0.2 602,716 + Psest_0548 0.79 +0.2 602,754 + Psest_0548 0.87 +0.1 602,754 + Psest_0548 0.87 +0.7 602,755 - Psest_0548 0.87 +0.2 602,880 + +0.1 602,880 + +0.3 602,880 + -0.5 602,880 + +0.7 602,880 + +1.0 602,880 + +0.0 602,880 + +0.3 602,880 + +1.2 602,880 + -0.2 602,881 - +0.8 602,881 - -1.8 602,881 - +1.2 602,881 - +0.9 602,881 - -0.2 602,881 - +0.2 602,881 - +1.8 602,881 - +0.7 602,881 - +2.0 602,883 - -1.5 602,883 - +0.2 602,883 - +1.3 602,945 + -0.2 602,945 + -1.3 602,946 - -0.2 603,007 + -0.2 603,007 + -0.9 603,007 + +0.6 603,007 + +1.5 603,007 + +0.1 603,007 + -2.2 603,007 + -0.4 603,007 + +1.4 603,007 + +0.7 603,007 + -0.1 603,007 + -1.4 603,007 + +0.8 603,007 + +0.7 603,007 + +0.7 603,025 + +0.0 603,026 - +0.3 603,164 + Psest_0549 0.36 +0.3 603,316 + Psest_0549 0.66 +0.3 603,316 + Psest_0549 0.66 +1.0 603,316 + Psest_0549 0.66 -0.4 603,316 + Psest_0549 0.66 +0.6 603,418 + Psest_0549 0.87 +1.0 603,418 + Psest_0549 0.87 +0.9 603,418 + Psest_0549 0.87 -0.4 603,418 + Psest_0549 0.87 +1.3 603,418 + Psest_0549 0.87 +2.0 603,419 - Psest_0549 0.87 +1.2 603,419 - Psest_0549 0.87 +2.5 603,453 - -0.6 603,481 + -0.4 603,482 - +1.2 603,482 - -0.8 603,482 - +0.1 603,544 + -1.2 603,757 + +0.2 603,758 - -0.2 603,774 - +1.4 603,866 - Psest_0550 0.15 -1.5 603,866 - Psest_0550 0.15 +0.8 603,866 - Psest_0550 0.15 +0.5 604,222 + Psest_0550 0.56 +0.5 604,222 + Psest_0550 0.56 +0.3 604,222 + Psest_0550 0.56 -1.6 604,223 - Psest_0550 0.56 -0.2 604,266 + Psest_0550 0.61 -1.2 604,276 + Psest_0550 0.62 -0.1 604,276 + Psest_0550 0.62 +0.5 604,276 + Psest_0550 0.62 +0.5 604,276 + Psest_0550 0.62 -0.0 604,276 + Psest_0550 0.62 +1.3 604,276 + Psest_0550 0.62 +1.2 604,276 + Psest_0550 0.62 +0.4 604,277 - Psest_0550 0.62 +0.3 604,277 - Psest_0550 0.62 +3.5 604,277 - Psest_0550 0.62 -0.6 604,277 - Psest_0550 0.62 -1.5 604,277 - Psest_0550 0.62 +0.0 604,277 - Psest_0550 0.62 +0.7 604,277 - Psest_0550 0.62 +0.8 604,277 - Psest_0550 0.62 +1.5 604,456 + Psest_0550 0.83 +1.6
Or see this region's nucleotide sequence