Experiment: LB 30C timecourse1 timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0513 and Psest_0514 overlap by 1 nucleotides Psest_0514 and Psest_0515 overlap by 4 nucleotides
Psest_0513: Psest_0513 - rod shape-determining protein RodA, at 566,642 to 567,787
_0513
Psest_0514: Psest_0514 - lytic murein transglycosylase B, at 567,787 to 568,812
_0514
Psest_0515: Psest_0515 - rare lipoprotein A, at 568,809 to 569,801
_0515
Position (kb) 567
568
569 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 567.864 kb on + strand at 567.898 kb on + strand, within Psest_0514 at 567.898 kb on + strand, within Psest_0514 at 567.946 kb on + strand, within Psest_0514 at 567.996 kb on + strand, within Psest_0514 at 567.996 kb on + strand, within Psest_0514 at 567.996 kb on + strand, within Psest_0514 at 567.996 kb on + strand, within Psest_0514 at 567.996 kb on + strand, within Psest_0514 at 568.100 kb on + strand, within Psest_0514 at 568.101 kb on - strand, within Psest_0514 at 568.201 kb on + strand, within Psest_0514 at 568.201 kb on + strand, within Psest_0514 at 568.201 kb on + strand, within Psest_0514 at 568.201 kb on + strand, within Psest_0514 at 568.357 kb on + strand, within Psest_0514 at 568.357 kb on + strand, within Psest_0514 at 568.357 kb on + strand, within Psest_0514 at 568.408 kb on + strand, within Psest_0514 at 568.486 kb on + strand, within Psest_0514 at 568.486 kb on + strand, within Psest_0514 at 568.486 kb on + strand, within Psest_0514 at 568.720 kb on + strand at 568.720 kb on + strand at 568.735 kb on + strand at 568.737 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.817 kb on + strand at 568.817 kb on + strand at 568.817 kb on + strand at 569.025 kb on + strand, within Psest_0515 at 569.026 kb on - strand, within Psest_0515 at 569.026 kb on - strand, within Psest_0515 at 569.026 kb on - strand, within Psest_0515 at 569.040 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.160 kb on + strand, within Psest_0515 at 569.211 kb on + strand, within Psest_0515 at 569.211 kb on + strand, within Psest_0515 at 569.302 kb on + strand, within Psest_0515 at 569.674 kb on + strand, within Psest_0515 at 569.675 kb on - strand, within Psest_0515 at 569.675 kb on - strand, within Psest_0515
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 2 remove 567,864 + -1.1 567,898 + Psest_0514 0.11 -0.3 567,898 + Psest_0514 0.11 -0.9 567,946 + Psest_0514 0.15 +0.1 567,996 + Psest_0514 0.20 -1.3 567,996 + Psest_0514 0.20 -1.5 567,996 + Psest_0514 0.20 -3.9 567,996 + Psest_0514 0.20 -1.2 567,996 + Psest_0514 0.20 -1.7 568,100 + Psest_0514 0.31 -2.3 568,101 - Psest_0514 0.31 -2.7 568,201 + Psest_0514 0.40 -0.5 568,201 + Psest_0514 0.40 -0.2 568,201 + Psest_0514 0.40 -1.6 568,201 + Psest_0514 0.40 -0.7 568,357 + Psest_0514 0.56 +0.3 568,357 + Psest_0514 0.56 -1.0 568,357 + Psest_0514 0.56 -1.7 568,408 + Psest_0514 0.61 -1.3 568,486 + Psest_0514 0.68 +0.0 568,486 + Psest_0514 0.68 -0.4 568,486 + Psest_0514 0.68 -1.0 568,720 + +0.1 568,720 + +1.9 568,735 + -0.5 568,737 + +0.6 568,753 + -0.1 568,753 + +0.9 568,753 + -1.5 568,753 + -0.7 568,753 + +0.6 568,753 + -0.3 568,753 + +1.8 568,753 + +0.1 568,753 + +0.6 568,753 + -0.0 568,753 + -0.0 568,753 + +0.1 568,753 + -0.3 568,753 + +0.7 568,753 + -0.0 568,753 + -1.1 568,753 + -0.6 568,753 + +0.3 568,753 + +0.2 568,753 + -0.5 568,753 + +0.2 568,753 + +0.3 568,753 + +0.4 568,753 + +0.2 568,753 + -0.1 568,753 + -1.4 568,754 - -1.2 568,754 - +0.1 568,754 - -1.7 568,754 - -1.2 568,754 - -1.5 568,754 - -1.6 568,754 - -2.5 568,754 - -2.5 568,754 - -2.7 568,754 - -2.7 568,754 - -2.9 568,754 - -0.3 568,817 + -0.1 568,817 + +0.4 568,817 + -0.7 569,025 + Psest_0515 0.22 -3.3 569,026 - Psest_0515 0.22 -1.5 569,026 - Psest_0515 0.22 -2.3 569,026 - Psest_0515 0.22 -0.9 569,040 + Psest_0515 0.23 +2.1 569,061 + Psest_0515 0.25 +0.1 569,061 + Psest_0515 0.25 -2.2 569,061 + Psest_0515 0.25 -1.8 569,061 + Psest_0515 0.25 -1.5 569,061 + Psest_0515 0.25 -0.5 569,160 + Psest_0515 0.35 +1.1 569,211 + Psest_0515 0.40 -0.9 569,211 + Psest_0515 0.40 +0.1 569,302 + Psest_0515 0.50 -1.2 569,674 + Psest_0515 0.87 +0.5 569,675 - Psest_0515 0.87 -1.8 569,675 - Psest_0515 0.87 -2.0
Or see this region's nucleotide sequence