Experiment: LB 30C timecourse1 timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0434 and Psest_0435 are separated by 77 nucleotides Psest_0435 and Psest_0436 are separated by 259 nucleotides Psest_0436 and Psest_0437 are separated by 77 nucleotides Psest_0437 and Psest_0438 are separated by 235 nucleotides
Psest_0434: Psest_0434 - hypothetical protein, at 471,134 to 471,760
_0434
Psest_0435: Psest_0435 - Predicted transcriptional regulators, at 471,838 to 472,134
_0435
Psest_0436: Psest_0436 - hypothetical protein, at 472,394 to 472,648
_0436
Psest_0437: Psest_0437 - hypothetical protein, at 472,726 to 472,956
_0437
Psest_0438: Psest_0438 - NACHT domain., at 473,192 to 477,613
_0438
Position (kb) 472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 471.395 kb on - strand, within Psest_0434 at 471.395 kb on - strand, within Psest_0434 at 471.395 kb on - strand, within Psest_0434 at 471.429 kb on + strand, within Psest_0434 at 471.430 kb on - strand, within Psest_0434 at 471.443 kb on + strand, within Psest_0434 at 471.443 kb on + strand, within Psest_0434 at 471.444 kb on - strand, within Psest_0434 at 471.444 kb on - strand, within Psest_0434 at 471.444 kb on - strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.521 kb on - strand, within Psest_0434 at 471.551 kb on - strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.555 kb on - strand, within Psest_0434 at 471.574 kb on - strand, within Psest_0434 at 471.597 kb on + strand, within Psest_0434 at 471.597 kb on + strand, within Psest_0434 at 471.598 kb on - strand, within Psest_0434 at 471.598 kb on - strand, within Psest_0434 at 471.598 kb on - strand, within Psest_0434 at 471.799 kb on + strand at 471.800 kb on - strand at 471.839 kb on + strand at 471.839 kb on + strand at 471.839 kb on + strand at 471.839 kb on + strand at 471.840 kb on - strand at 471.840 kb on - strand at 471.840 kb on - strand at 471.868 kb on + strand, within Psest_0435 at 471.869 kb on - strand, within Psest_0435 at 471.889 kb on + strand, within Psest_0435 at 471.890 kb on - strand, within Psest_0435 at 471.895 kb on + strand, within Psest_0435 at 471.896 kb on - strand, within Psest_0435 at 471.896 kb on - strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.932 kb on + strand, within Psest_0435 at 471.933 kb on - strand, within Psest_0435 at 471.933 kb on - strand, within Psest_0435 at 471.933 kb on - strand, within Psest_0435 at 471.933 kb on - strand, within Psest_0435 at 472.002 kb on + strand, within Psest_0435 at 472.002 kb on + strand, within Psest_0435 at 472.002 kb on + strand, within Psest_0435 at 472.002 kb on + strand, within Psest_0435 at 472.012 kb on - strand, within Psest_0435 at 472.037 kb on + strand, within Psest_0435 at 472.037 kb on + strand, within Psest_0435 at 472.038 kb on - strand, within Psest_0435 at 472.038 kb on - strand, within Psest_0435 at 472.038 kb on - strand, within Psest_0435 at 472.038 kb on - strand, within Psest_0435 at 472.038 kb on - strand, within Psest_0435 at 472.038 kb on - strand, within Psest_0435 at 472.075 kb on - strand, within Psest_0435 at 472.111 kb on - strand at 472.316 kb on - strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.346 kb on + strand at 472.347 kb on - strand at 472.347 kb on - strand at 472.395 kb on + strand at 472.413 kb on + strand at 472.414 kb on - strand at 472.431 kb on + strand, within Psest_0436 at 472.431 kb on + strand, within Psest_0436 at 472.437 kb on + strand, within Psest_0436 at 472.437 kb on + strand, within Psest_0436 at 472.437 kb on + strand, within Psest_0436 at 472.437 kb on + strand, within Psest_0436 at 472.437 kb on + strand, within Psest_0436 at 472.437 kb on + strand, within Psest_0436 at 472.438 kb on - strand, within Psest_0436 at 472.438 kb on - strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.573 kb on + strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.574 kb on - strand, within Psest_0436 at 472.577 kb on + strand, within Psest_0436 at 472.602 kb on - strand, within Psest_0436 at 472.705 kb on + strand at 472.705 kb on + strand at 472.705 kb on + strand at 472.705 kb on + strand at 472.706 kb on - strand at 472.706 kb on - strand at 472.706 kb on - strand at 472.706 kb on - strand at 472.760 kb on + strand, within Psest_0437 at 472.760 kb on + strand, within Psest_0437 at 472.761 kb on - strand, within Psest_0437 at 472.761 kb on - strand, within Psest_0437 at 472.872 kb on + strand, within Psest_0437 at 472.932 kb on - strand, within Psest_0437 at 472.932 kb on - strand, within Psest_0437 at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.957 kb on + strand at 472.958 kb on - strand at 472.958 kb on - strand at 472.958 kb on - strand at 472.958 kb on - strand at 472.961 kb on + strand at 472.992 kb on + strand at 472.992 kb on + strand at 472.992 kb on + strand at 472.992 kb on + strand at 472.993 kb on - strand at 473.016 kb on + strand at 473.017 kb on - strand at 473.029 kb on + strand at 473.029 kb on + strand at 473.029 kb on + strand at 473.029 kb on + strand at 473.070 kb on + strand at 473.070 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.111 kb on + strand at 473.112 kb on - strand at 473.112 kb on - strand at 473.112 kb on - strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.113 kb on + strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.114 kb on - strand at 473.234 kb on + strand at 473.234 kb on + strand at 473.234 kb on + strand at 473.235 kb on - strand at 473.235 kb on - strand at 473.240 kb on + strand at 473.240 kb on + strand at 473.240 kb on + strand at 473.298 kb on - strand at 473.298 kb on - strand at 473.298 kb on - strand at 473.541 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 2 remove 471,395 - Psest_0434 0.42 +0.1 471,395 - Psest_0434 0.42 -0.6 471,395 - Psest_0434 0.42 +0.8 471,429 + Psest_0434 0.47 -0.4 471,430 - Psest_0434 0.47 -0.3 471,443 + Psest_0434 0.49 -0.9 471,443 + Psest_0434 0.49 -0.7 471,444 - Psest_0434 0.49 -0.2 471,444 - Psest_0434 0.49 +0.0 471,444 - Psest_0434 0.49 -0.4 471,460 + Psest_0434 0.52 -3.6 471,460 + Psest_0434 0.52 -0.4 471,460 + Psest_0434 0.52 -0.3 471,460 + Psest_0434 0.52 +0.5 471,460 + Psest_0434 0.52 -0.4 471,460 + Psest_0434 0.52 -0.5 471,460 + Psest_0434 0.52 -0.6 471,461 - Psest_0434 0.52 -0.2 471,461 - Psest_0434 0.52 -0.0 471,461 - Psest_0434 0.52 -1.1 471,461 - Psest_0434 0.52 -2.0 471,461 - Psest_0434 0.52 -0.4 471,461 - Psest_0434 0.52 +0.7 471,461 - Psest_0434 0.52 +1.7 471,494 + Psest_0434 0.57 -0.2 471,494 + Psest_0434 0.57 +0.9 471,494 + Psest_0434 0.57 -0.1 471,494 + Psest_0434 0.57 -1.5 471,494 + Psest_0434 0.57 +0.1 471,494 + Psest_0434 0.57 -0.2 471,494 + Psest_0434 0.57 -0.2 471,494 + Psest_0434 0.57 -0.4 471,494 + Psest_0434 0.57 -0.2 471,494 + Psest_0434 0.57 +0.3 471,494 + Psest_0434 0.57 -0.3 471,494 + Psest_0434 0.57 -0.1 471,495 - Psest_0434 0.58 +0.1 471,495 - Psest_0434 0.58 -0.3 471,495 - Psest_0434 0.58 +0.5 471,495 - Psest_0434 0.58 -0.1 471,495 - Psest_0434 0.58 -0.0 471,495 - Psest_0434 0.58 -0.2 471,495 - Psest_0434 0.58 -0.0 471,495 - Psest_0434 0.58 -1.1 471,495 - Psest_0434 0.58 -1.0 471,521 - Psest_0434 0.62 +0.1 471,551 - Psest_0434 0.67 -0.8 471,554 + Psest_0434 0.67 +1.9 471,554 + Psest_0434 0.67 -0.6 471,554 + Psest_0434 0.67 -0.5 471,554 + Psest_0434 0.67 -0.3 471,554 + Psest_0434 0.67 -0.0 471,554 + Psest_0434 0.67 +1.3 471,554 + Psest_0434 0.67 -0.3 471,554 + Psest_0434 0.67 +0.8 471,555 - Psest_0434 0.67 -0.0 471,574 - Psest_0434 0.70 -0.6 471,597 + Psest_0434 0.74 -0.1 471,597 + Psest_0434 0.74 -0.2 471,598 - Psest_0434 0.74 -1.4 471,598 - Psest_0434 0.74 +0.8 471,598 - Psest_0434 0.74 -0.1 471,799 + -1.6 471,800 - -0.2 471,839 + -0.0 471,839 + -1.2 471,839 + +0.3 471,839 + -0.9 471,840 - -1.1 471,840 - +0.4 471,840 - +0.4 471,868 + Psest_0435 0.10 -0.8 471,869 - Psest_0435 0.10 -0.3 471,889 + Psest_0435 0.17 -1.1 471,890 - Psest_0435 0.18 -0.3 471,895 + Psest_0435 0.19 -1.9 471,896 - Psest_0435 0.20 +0.6 471,896 - Psest_0435 0.20 -0.5 471,932 + Psest_0435 0.32 -0.6 471,932 + Psest_0435 0.32 +0.4 471,932 + Psest_0435 0.32 +0.6 471,932 + Psest_0435 0.32 -0.7 471,932 + Psest_0435 0.32 +0.0 471,932 + Psest_0435 0.32 -0.4 471,932 + Psest_0435 0.32 -0.0 471,933 - Psest_0435 0.32 +0.4 471,933 - Psest_0435 0.32 -0.4 471,933 - Psest_0435 0.32 -0.8 471,933 - Psest_0435 0.32 +0.8 472,002 + Psest_0435 0.55 -1.4 472,002 + Psest_0435 0.55 +0.2 472,002 + Psest_0435 0.55 -0.0 472,002 + Psest_0435 0.55 +0.4 472,012 - Psest_0435 0.59 +0.5 472,037 + Psest_0435 0.67 -0.5 472,037 + Psest_0435 0.67 -0.6 472,038 - Psest_0435 0.67 +0.1 472,038 - Psest_0435 0.67 +0.6 472,038 - Psest_0435 0.67 -1.0 472,038 - Psest_0435 0.67 +0.2 472,038 - Psest_0435 0.67 -0.2 472,038 - Psest_0435 0.67 -1.5 472,075 - Psest_0435 0.80 -0.1 472,111 - +0.2 472,316 - -0.9 472,346 + +0.6 472,346 + -0.5 472,346 + -0.3 472,346 + -1.4 472,346 + -1.4 472,346 + -0.3 472,346 + -0.5 472,346 + -1.6 472,346 + -0.4 472,346 + +0.4 472,346 + +0.8 472,346 + -0.8 472,347 - +0.7 472,347 - -0.5 472,395 + -0.7 472,413 + -2.4 472,414 - +0.9 472,431 + Psest_0436 0.15 -0.4 472,431 + Psest_0436 0.15 -0.5 472,437 + Psest_0436 0.17 -0.3 472,437 + Psest_0436 0.17 -0.7 472,437 + Psest_0436 0.17 -0.7 472,437 + Psest_0436 0.17 -0.3 472,437 + Psest_0436 0.17 -1.0 472,437 + Psest_0436 0.17 +1.0 472,438 - Psest_0436 0.17 -0.5 472,438 - Psest_0436 0.17 -0.2 472,573 + Psest_0436 0.70 -1.1 472,573 + Psest_0436 0.70 -0.3 472,573 + Psest_0436 0.70 -0.5 472,573 + Psest_0436 0.70 -1.7 472,573 + Psest_0436 0.70 -0.8 472,573 + Psest_0436 0.70 -0.1 472,573 + Psest_0436 0.70 -0.1 472,573 + Psest_0436 0.70 -0.4 472,573 + Psest_0436 0.70 -0.4 472,573 + Psest_0436 0.70 -0.9 472,573 + Psest_0436 0.70 -0.7 472,573 + Psest_0436 0.70 +0.3 472,573 + Psest_0436 0.70 -1.7 472,573 + Psest_0436 0.70 -0.8 472,573 + Psest_0436 0.70 -1.1 472,573 + Psest_0436 0.70 +0.2 472,573 + Psest_0436 0.70 -0.9 472,573 + Psest_0436 0.70 -0.8 472,573 + Psest_0436 0.70 -1.6 472,573 + Psest_0436 0.70 -0.4 472,573 + Psest_0436 0.70 -0.1 472,574 - Psest_0436 0.71 +0.1 472,574 - Psest_0436 0.71 -0.8 472,574 - Psest_0436 0.71 +0.5 472,574 - Psest_0436 0.71 -0.2 472,574 - Psest_0436 0.71 +1.1 472,574 - Psest_0436 0.71 -0.9 472,574 - Psest_0436 0.71 -1.1 472,574 - Psest_0436 0.71 -0.1 472,574 - Psest_0436 0.71 -0.0 472,574 - Psest_0436 0.71 -0.8 472,574 - Psest_0436 0.71 -0.4 472,574 - Psest_0436 0.71 -0.5 472,574 - Psest_0436 0.71 +0.2 472,574 - Psest_0436 0.71 -0.1 472,574 - Psest_0436 0.71 +0.5 472,574 - Psest_0436 0.71 -0.5 472,574 - Psest_0436 0.71 +0.1 472,577 + Psest_0436 0.72 +0.2 472,602 - Psest_0436 0.82 +0.7 472,705 + -0.1 472,705 + -1.4 472,705 + +0.4 472,705 + -0.7 472,706 - -1.1 472,706 - -0.7 472,706 - +0.1 472,706 - +0.5 472,760 + Psest_0437 0.15 +0.1 472,760 + Psest_0437 0.15 +0.6 472,761 - Psest_0437 0.15 -0.3 472,761 - Psest_0437 0.15 -2.4 472,872 + Psest_0437 0.63 +0.7 472,932 - Psest_0437 0.89 -0.2 472,932 - Psest_0437 0.89 -0.2 472,957 + -1.2 472,957 + -1.5 472,957 + -0.4 472,957 + -0.6 472,957 + +0.2 472,957 + -0.4 472,957 + -0.2 472,957 + +1.1 472,957 + -1.7 472,957 + -0.6 472,957 + -1.1 472,958 - +0.0 472,958 - -0.3 472,958 - -0.1 472,958 - +0.3 472,961 + -0.0 472,992 + -0.6 472,992 + +0.8 472,992 + -0.2 472,992 + -0.0 472,993 - -0.8 473,016 + -1.6 473,017 - -1.5 473,029 + +0.2 473,029 + -0.9 473,029 + +1.4 473,029 + +0.3 473,070 + +0.2 473,070 + -0.4 473,111 + -0.3 473,111 + +0.5 473,111 + -0.9 473,111 + -3.6 473,111 + -0.5 473,111 + +0.1 473,111 + -0.5 473,111 + -0.3 473,111 + -0.1 473,112 - -0.6 473,112 - +1.3 473,112 - +0.5 473,113 + +0.5 473,113 + -0.4 473,113 + -0.6 473,113 + +1.0 473,113 + -1.4 473,113 + -0.1 473,113 + -0.2 473,113 + +0.1 473,113 + -1.5 473,113 + +0.8 473,113 + -0.1 473,113 + +0.4 473,113 + -0.2 473,113 + -0.3 473,113 + -0.6 473,113 + +0.4 473,113 + -0.6 473,113 + -1.2 473,114 - -0.7 473,114 - +0.3 473,114 - -0.7 473,114 - +0.0 473,114 - +0.9 473,114 - -0.2 473,114 - -2.9 473,114 - -1.9 473,114 - -1.1 473,114 - -0.0 473,114 - -0.3 473,234 + -1.9 473,234 + +0.2 473,234 + +0.2 473,235 - -0.0 473,235 - +0.0 473,240 + -0.5 473,240 + +0.5 473,240 + -0.2 473,298 - -2.0 473,298 - -1.1 473,298 - -0.4 473,541 + -0.3
Or see this region's nucleotide sequence