Experiment: LB 30C timecourse1 timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0429 and Psest_0430 are separated by 8 nucleotides Psest_0430 and Psest_0431 are separated by 8 nucleotides Psest_0431 and Psest_0432 overlap by 7 nucleotides
Psest_0429: Psest_0429 - phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein, at 467,122 to 467,985
_0429
Psest_0430: Psest_0430 - phosphonate ABC transporter, permease protein PhnE, at 467,994 to 468,821
_0430
Psest_0431: Psest_0431 - Lactate dehydrogenase and related dehydrogenases, at 468,830 to 469,840
_0431
Psest_0432: Psest_0432 - Transcriptional regulator, at 469,834 to 470,703
_0432
Position (kb) 468
469
470 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 467.852 kb on + strand, within Psest_0429 at 467.852 kb on + strand, within Psest_0429 at 467.852 kb on + strand, within Psest_0429 at 467.852 kb on + strand, within Psest_0429 at 467.852 kb on + strand, within Psest_0429 at 467.852 kb on + strand, within Psest_0429 at 467.853 kb on - strand, within Psest_0429 at 467.853 kb on - strand, within Psest_0429 at 467.853 kb on - strand, within Psest_0429 at 467.853 kb on - strand, within Psest_0429 at 467.853 kb on - strand, within Psest_0429 at 467.853 kb on - strand, within Psest_0429 at 467.993 kb on + strand at 468.007 kb on - strand at 468.100 kb on + strand, within Psest_0430 at 468.100 kb on + strand, within Psest_0430 at 468.101 kb on - strand, within Psest_0430 at 468.101 kb on - strand, within Psest_0430 at 468.101 kb on - strand, within Psest_0430 at 468.129 kb on + strand, within Psest_0430 at 468.130 kb on - strand, within Psest_0430 at 468.130 kb on - strand, within Psest_0430 at 468.630 kb on + strand, within Psest_0430 at 468.642 kb on + strand, within Psest_0430 at 468.642 kb on + strand, within Psest_0430 at 468.643 kb on - strand, within Psest_0430 at 468.729 kb on + strand, within Psest_0430 at 468.730 kb on - strand, within Psest_0430 at 468.779 kb on - strand at 468.779 kb on - strand at 468.781 kb on + strand at 468.781 kb on + strand at 468.782 kb on - strand at 468.782 kb on - strand at 468.782 kb on - strand at 468.819 kb on + strand at 468.847 kb on + strand at 468.848 kb on - strand at 468.849 kb on + strand at 468.849 kb on + strand at 468.849 kb on + strand at 468.849 kb on + strand at 468.849 kb on + strand at 468.849 kb on + strand at 468.850 kb on - strand at 468.850 kb on - strand at 468.850 kb on - strand at 468.850 kb on - strand at 468.850 kb on - strand at 468.861 kb on + strand at 468.862 kb on - strand at 469.038 kb on + strand, within Psest_0431 at 469.245 kb on - strand, within Psest_0431 at 469.267 kb on + strand, within Psest_0431 at 469.267 kb on + strand, within Psest_0431 at 469.506 kb on + strand, within Psest_0431 at 469.527 kb on + strand, within Psest_0431 at 469.527 kb on + strand, within Psest_0431 at 469.527 kb on + strand, within Psest_0431 at 469.527 kb on + strand, within Psest_0431 at 469.527 kb on + strand, within Psest_0431 at 469.528 kb on - strand, within Psest_0431 at 469.528 kb on - strand, within Psest_0431 at 469.528 kb on - strand, within Psest_0431 at 469.528 kb on - strand, within Psest_0431 at 469.528 kb on - strand, within Psest_0431 at 469.528 kb on - strand, within Psest_0431 at 469.548 kb on + strand, within Psest_0431 at 469.602 kb on - strand, within Psest_0431 at 469.614 kb on + strand, within Psest_0431 at 469.614 kb on + strand, within Psest_0431 at 469.615 kb on - strand, within Psest_0431 at 469.615 kb on - strand, within Psest_0431 at 469.615 kb on - strand, within Psest_0431 at 469.615 kb on - strand, within Psest_0431 at 469.687 kb on + strand, within Psest_0431 at 469.688 kb on - strand, within Psest_0431 at 469.688 kb on - strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.866 kb on - strand at 470.008 kb on - strand, within Psest_0432 at 470.072 kb on + strand, within Psest_0432 at 470.128 kb on + strand, within Psest_0432 at 470.128 kb on + strand, within Psest_0432 at 470.128 kb on + strand, within Psest_0432 at 470.128 kb on + strand, within Psest_0432 at 470.128 kb on + strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.155 kb on + strand, within Psest_0432 at 470.155 kb on + strand, within Psest_0432 at 470.155 kb on + strand, within Psest_0432 at 470.155 kb on + strand, within Psest_0432 at 470.155 kb on + strand, within Psest_0432 at 470.155 kb on + strand, within Psest_0432 at 470.156 kb on - strand, within Psest_0432 at 470.156 kb on - strand, within Psest_0432 at 470.156 kb on - strand, within Psest_0432 at 470.156 kb on - strand, within Psest_0432 at 470.156 kb on - strand, within Psest_0432 at 470.156 kb on - strand, within Psest_0432 at 470.229 kb on - strand, within Psest_0432 at 470.229 kb on - strand, within Psest_0432 at 470.229 kb on - strand, within Psest_0432 at 470.271 kb on - strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.364 kb on - strand, within Psest_0432 at 470.364 kb on - strand, within Psest_0432 at 470.364 kb on - strand, within Psest_0432 at 470.364 kb on - strand, within Psest_0432 at 470.364 kb on - strand, within Psest_0432 at 470.440 kb on + strand, within Psest_0432 at 470.440 kb on + strand, within Psest_0432 at 470.440 kb on + strand, within Psest_0432 at 470.441 kb on - strand, within Psest_0432 at 470.441 kb on - strand, within Psest_0432 at 470.552 kb on + strand, within Psest_0432 at 470.552 kb on + strand, within Psest_0432 at 470.552 kb on + strand, within Psest_0432 at 470.553 kb on - strand, within Psest_0432 at 470.583 kb on - strand, within Psest_0432 at 470.675 kb on + strand at 470.675 kb on + strand at 470.675 kb on + strand at 470.675 kb on + strand at 470.676 kb on - strand at 470.676 kb on - strand at 470.693 kb on + strand at 470.693 kb on + strand at 470.693 kb on + strand at 470.693 kb on + strand at 470.693 kb on + strand at 470.693 kb on + strand at 470.694 kb on - strand at 470.694 kb on - strand at 470.694 kb on - strand at 470.694 kb on - strand at 470.782 kb on + strand at 470.783 kb on - strand at 470.783 kb on - strand at 470.831 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 2 remove 467,852 + Psest_0429 0.84 -1.0 467,852 + Psest_0429 0.84 -0.4 467,852 + Psest_0429 0.84 -3.0 467,852 + Psest_0429 0.84 -1.2 467,852 + Psest_0429 0.84 -0.4 467,852 + Psest_0429 0.84 -0.5 467,853 - Psest_0429 0.85 -0.9 467,853 - Psest_0429 0.85 -0.4 467,853 - Psest_0429 0.85 -0.2 467,853 - Psest_0429 0.85 -0.5 467,853 - Psest_0429 0.85 -0.8 467,853 - Psest_0429 0.85 -1.4 467,993 + -0.8 468,007 - -1.6 468,100 + Psest_0430 0.13 -0.0 468,100 + Psest_0430 0.13 -0.2 468,101 - Psest_0430 0.13 -0.7 468,101 - Psest_0430 0.13 +0.5 468,101 - Psest_0430 0.13 +0.7 468,129 + Psest_0430 0.16 -1.3 468,130 - Psest_0430 0.16 -0.2 468,130 - Psest_0430 0.16 +1.0 468,630 + Psest_0430 0.77 -1.1 468,642 + Psest_0430 0.78 -0.7 468,642 + Psest_0430 0.78 -0.6 468,643 - Psest_0430 0.78 -0.4 468,729 + Psest_0430 0.89 -0.7 468,730 - Psest_0430 0.89 -0.8 468,779 - -0.7 468,779 - -1.1 468,781 + -0.5 468,781 + -0.2 468,782 - -0.6 468,782 - -1.4 468,782 - -0.2 468,819 + -0.4 468,847 + +0.4 468,848 - +0.3 468,849 + -0.5 468,849 + +0.7 468,849 + -2.6 468,849 + -0.5 468,849 + -1.7 468,849 + -0.6 468,850 - +0.0 468,850 - -0.1 468,850 - -0.5 468,850 - +0.2 468,850 - -0.0 468,861 + -0.3 468,862 - -0.4 469,038 + Psest_0431 0.21 +0.3 469,245 - Psest_0431 0.41 +0.2 469,267 + Psest_0431 0.43 -1.2 469,267 + Psest_0431 0.43 -1.7 469,506 + Psest_0431 0.67 -0.2 469,527 + Psest_0431 0.69 -0.6 469,527 + Psest_0431 0.69 +0.4 469,527 + Psest_0431 0.69 -0.6 469,527 + Psest_0431 0.69 -0.4 469,527 + Psest_0431 0.69 -0.2 469,528 - Psest_0431 0.69 +0.2 469,528 - Psest_0431 0.69 -0.3 469,528 - Psest_0431 0.69 -1.1 469,528 - Psest_0431 0.69 -0.9 469,528 - Psest_0431 0.69 -2.2 469,528 - Psest_0431 0.69 -0.8 469,548 + Psest_0431 0.71 -1.8 469,602 - Psest_0431 0.76 -0.4 469,614 + Psest_0431 0.78 -1.6 469,614 + Psest_0431 0.78 -0.0 469,615 - Psest_0431 0.78 -0.2 469,615 - Psest_0431 0.78 -0.4 469,615 - Psest_0431 0.78 -0.3 469,615 - Psest_0431 0.78 -0.5 469,687 + Psest_0431 0.85 +0.1 469,688 - Psest_0431 0.85 -0.5 469,688 - Psest_0431 0.85 -1.1 469,707 + Psest_0431 0.87 -1.0 469,707 + Psest_0431 0.87 +0.5 469,707 + Psest_0431 0.87 -0.9 469,707 + Psest_0431 0.87 +0.5 469,707 + Psest_0431 0.87 -1.1 469,707 + Psest_0431 0.87 +0.2 469,707 + Psest_0431 0.87 +1.4 469,707 + Psest_0431 0.87 -0.1 469,708 - Psest_0431 0.87 -1.5 469,708 - Psest_0431 0.87 -0.7 469,708 - Psest_0431 0.87 -1.1 469,708 - Psest_0431 0.87 -1.2 469,708 - Psest_0431 0.87 +0.2 469,708 - Psest_0431 0.87 -0.1 469,708 - Psest_0431 0.87 +0.1 469,708 - Psest_0431 0.87 -1.7 469,866 - -0.5 470,008 - Psest_0432 0.20 -0.0 470,072 + Psest_0432 0.27 -0.5 470,128 + Psest_0432 0.34 -0.4 470,128 + Psest_0432 0.34 -0.9 470,128 + Psest_0432 0.34 -0.3 470,128 + Psest_0432 0.34 -1.0 470,128 + Psest_0432 0.34 -0.8 470,129 - Psest_0432 0.34 -0.2 470,129 - Psest_0432 0.34 -0.5 470,129 - Psest_0432 0.34 -2.9 470,129 - Psest_0432 0.34 -0.1 470,129 - Psest_0432 0.34 -2.2 470,129 - Psest_0432 0.34 -1.2 470,129 - Psest_0432 0.34 -0.9 470,129 - Psest_0432 0.34 +0.4 470,129 - Psest_0432 0.34 -1.0 470,155 + Psest_0432 0.37 +1.1 470,155 + Psest_0432 0.37 -0.7 470,155 + Psest_0432 0.37 -0.4 470,155 + Psest_0432 0.37 -0.2 470,155 + Psest_0432 0.37 -0.5 470,155 + Psest_0432 0.37 -0.1 470,156 - Psest_0432 0.37 +0.8 470,156 - Psest_0432 0.37 -0.2 470,156 - Psest_0432 0.37 -0.2 470,156 - Psest_0432 0.37 -0.9 470,156 - Psest_0432 0.37 -0.4 470,156 - Psest_0432 0.37 -0.6 470,229 - Psest_0432 0.45 -0.4 470,229 - Psest_0432 0.45 -0.2 470,229 - Psest_0432 0.45 -0.8 470,271 - Psest_0432 0.50 -0.6 470,363 + Psest_0432 0.61 -0.9 470,363 + Psest_0432 0.61 -0.2 470,363 + Psest_0432 0.61 -0.4 470,363 + Psest_0432 0.61 -0.6 470,363 + Psest_0432 0.61 +0.3 470,363 + Psest_0432 0.61 -0.6 470,363 + Psest_0432 0.61 +0.3 470,363 + Psest_0432 0.61 -1.5 470,363 + Psest_0432 0.61 -0.2 470,364 - Psest_0432 0.61 +0.6 470,364 - Psest_0432 0.61 +0.6 470,364 - Psest_0432 0.61 -0.7 470,364 - Psest_0432 0.61 -1.1 470,364 - Psest_0432 0.61 +0.2 470,440 + Psest_0432 0.70 -0.6 470,440 + Psest_0432 0.70 -0.4 470,440 + Psest_0432 0.70 -1.7 470,441 - Psest_0432 0.70 -0.1 470,441 - Psest_0432 0.70 +0.1 470,552 + Psest_0432 0.83 +0.7 470,552 + Psest_0432 0.83 +0.3 470,552 + Psest_0432 0.83 -0.7 470,553 - Psest_0432 0.83 -0.5 470,583 - Psest_0432 0.86 -1.3 470,675 + +0.0 470,675 + -0.8 470,675 + -0.0 470,675 + +0.9 470,676 - -0.6 470,676 - -0.3 470,693 + -1.2 470,693 + +0.1 470,693 + -0.5 470,693 + -2.7 470,693 + -1.5 470,693 + -2.8 470,694 - -0.1 470,694 - -1.2 470,694 - -0.4 470,694 - +0.2 470,782 + -1.8 470,783 - +0.1 470,783 - -1.2 470,831 - +0.7
Or see this region's nucleotide sequence