Experiment: LB 30C timecourse1 timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4195 and Psest_4196 are separated by 3 nucleotides Psest_4196 and Psest_4197 overlap by 4 nucleotides Psest_4197 and Psest_4198 overlap by 4 nucleotides
Psest_4195: Psest_4195 - general secretion pathway protein L, at 4,373,801 to 4,374,934
_4195
Psest_4196: Psest_4196 - Type II secretory pathway, component PulK, at 4,374,938 to 4,375,927
_4196
Psest_4197: Psest_4197 - general secretion pathway protein J, at 4,375,924 to 4,376,637
_4197
Psest_4198: Psest_4198 - general secretion pathway protein I, at 4,376,634 to 4,377,053
_4198
Position (kb) 4374
4375
4376 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4373.964 kb on + strand, within Psest_4195 at 4373.964 kb on + strand, within Psest_4195 at 4373.965 kb on - strand, within Psest_4195 at 4373.965 kb on - strand, within Psest_4195 at 4373.965 kb on - strand, within Psest_4195 at 4374.178 kb on - strand, within Psest_4195 at 4374.178 kb on - strand, within Psest_4195 at 4374.178 kb on - strand, within Psest_4195 at 4374.329 kb on + strand, within Psest_4195 at 4374.330 kb on - strand, within Psest_4195 at 4374.330 kb on - strand, within Psest_4195 at 4374.330 kb on - strand, within Psest_4195 at 4374.512 kb on + strand, within Psest_4195 at 4374.512 kb on + strand, within Psest_4195 at 4374.512 kb on + strand, within Psest_4195 at 4374.512 kb on + strand, within Psest_4195 at 4374.513 kb on - strand, within Psest_4195 at 4374.873 kb on + strand at 4374.939 kb on + strand at 4374.939 kb on + strand at 4374.939 kb on + strand at 4374.939 kb on + strand at 4374.939 kb on + strand at 4375.126 kb on + strand, within Psest_4196 at 4375.305 kb on + strand, within Psest_4196 at 4375.306 kb on - strand, within Psest_4196 at 4375.549 kb on + strand, within Psest_4196 at 4375.549 kb on + strand, within Psest_4196 at 4376.028 kb on + strand, within Psest_4197 at 4376.029 kb on - strand, within Psest_4197 at 4376.247 kb on - strand, within Psest_4197 at 4376.434 kb on + strand, within Psest_4197 at 4376.435 kb on - strand, within Psest_4197 at 4376.435 kb on - strand, within Psest_4197 at 4376.546 kb on + strand, within Psest_4197 at 4376.547 kb on - strand, within Psest_4197
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 2 remove 4,373,964 + Psest_4195 0.14 +0.0 4,373,964 + Psest_4195 0.14 +0.4 4,373,965 - Psest_4195 0.14 -1.4 4,373,965 - Psest_4195 0.14 -1.1 4,373,965 - Psest_4195 0.14 +0.9 4,374,178 - Psest_4195 0.33 -0.6 4,374,178 - Psest_4195 0.33 +0.0 4,374,178 - Psest_4195 0.33 -0.6 4,374,329 + Psest_4195 0.47 +0.8 4,374,330 - Psest_4195 0.47 -0.2 4,374,330 - Psest_4195 0.47 -1.6 4,374,330 - Psest_4195 0.47 -0.9 4,374,512 + Psest_4195 0.63 -1.3 4,374,512 + Psest_4195 0.63 +0.0 4,374,512 + Psest_4195 0.63 -1.0 4,374,512 + Psest_4195 0.63 -0.7 4,374,513 - Psest_4195 0.63 +0.6 4,374,873 + -0.3 4,374,939 + -0.5 4,374,939 + -0.2 4,374,939 + +0.2 4,374,939 + -1.3 4,374,939 + +0.7 4,375,126 + Psest_4196 0.19 +0.0 4,375,305 + Psest_4196 0.37 -2.0 4,375,306 - Psest_4196 0.37 -0.7 4,375,549 + Psest_4196 0.62 -2.0 4,375,549 + Psest_4196 0.62 +0.0 4,376,028 + Psest_4197 0.15 +2.0 4,376,029 - Psest_4197 0.15 -0.3 4,376,247 - Psest_4197 0.45 -0.2 4,376,434 + Psest_4197 0.71 -0.4 4,376,435 - Psest_4197 0.72 +1.4 4,376,435 - Psest_4197 0.72 -1.2 4,376,546 + Psest_4197 0.87 -1.1 4,376,547 - Psest_4197 0.87 -0.6
Or see this region's nucleotide sequence