Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4025 and HP15_4026 overlap by 4 nucleotides HP15_4026 and HP15_4027 are separated by 14 nucleotides
HP15_4025: HP15_4025 - phenol hydroxylase component, at 4,262,764 to 4,263,765
_4025
HP15_4026: HP15_4026 - monooxygenase component MmoB/DmpM, at 4,263,762 to 4,264,031
_4026
HP15_4027: HP15_4027 - phenol hydroxylase oxygenase component, at 4,264,046 to 4,265,593
_4027
Position (kb)
4263
4264
4265 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4262.810 kb on + strand at 4263.008 kb on - strand, within HP15_4025 at 4263.064 kb on - strand, within HP15_4025 at 4263.064 kb on - strand, within HP15_4025 at 4263.154 kb on - strand, within HP15_4025 at 4263.256 kb on - strand, within HP15_4025 at 4263.274 kb on + strand, within HP15_4025 at 4263.323 kb on - strand, within HP15_4025 at 4263.409 kb on - strand, within HP15_4025 at 4263.412 kb on + strand, within HP15_4025 at 4263.508 kb on - strand, within HP15_4025 at 4263.530 kb on + strand, within HP15_4025 at 4263.530 kb on + strand, within HP15_4025 at 4263.538 kb on - strand, within HP15_4025 at 4263.538 kb on - strand, within HP15_4025 at 4263.538 kb on - strand, within HP15_4025 at 4263.552 kb on + strand, within HP15_4025 at 4263.552 kb on + strand, within HP15_4025 at 4263.604 kb on - strand, within HP15_4025 at 4263.754 kb on - strand at 4263.938 kb on + strand, within HP15_4026 at 4264.115 kb on + strand at 4264.149 kb on - strand at 4264.288 kb on + strand, within HP15_4027 at 4264.369 kb on - strand, within HP15_4027 at 4264.384 kb on + strand, within HP15_4027 at 4264.397 kb on - strand, within HP15_4027 at 4264.408 kb on + strand, within HP15_4027 at 4264.408 kb on + strand, within HP15_4027 at 4264.445 kb on - strand, within HP15_4027 at 4264.472 kb on - strand, within HP15_4027 at 4264.518 kb on - strand, within HP15_4027 at 4264.665 kb on - strand, within HP15_4027 at 4264.743 kb on - strand, within HP15_4027 at 4264.764 kb on + strand, within HP15_4027 at 4264.772 kb on - strand, within HP15_4027 at 4264.785 kb on + strand, within HP15_4027 at 4264.825 kb on - strand, within HP15_4027 at 4264.851 kb on + strand, within HP15_4027 at 4264.934 kb on - strand, within HP15_4027 at 4264.963 kb on + strand, within HP15_4027 at 4264.971 kb on - strand, within HP15_4027 at 4264.971 kb on - strand, within HP15_4027 at 4264.971 kb on - strand, within HP15_4027 at 4264.980 kb on - strand, within HP15_4027
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 4,262,810 + +0.9 4,263,008 - HP15_4025 0.24 +1.2 4,263,064 - HP15_4025 0.30 -0.6 4,263,064 - HP15_4025 0.30 +1.6 4,263,154 - HP15_4025 0.39 +0.8 4,263,256 - HP15_4025 0.49 -0.6 4,263,274 + HP15_4025 0.51 -0.1 4,263,323 - HP15_4025 0.56 +1.5 4,263,409 - HP15_4025 0.64 +1.2 4,263,412 + HP15_4025 0.65 +0.1 4,263,508 - HP15_4025 0.74 -1.0 4,263,530 + HP15_4025 0.76 +0.2 4,263,530 + HP15_4025 0.76 +0.2 4,263,538 - HP15_4025 0.77 -0.2 4,263,538 - HP15_4025 0.77 +1.2 4,263,538 - HP15_4025 0.77 +1.5 4,263,552 + HP15_4025 0.79 +0.7 4,263,552 + HP15_4025 0.79 +1.0 4,263,604 - HP15_4025 0.84 -1.7 4,263,754 - -0.1 4,263,938 + HP15_4026 0.65 +1.8 4,264,115 + +0.8 4,264,149 - -0.8 4,264,288 + HP15_4027 0.16 +0.6 4,264,369 - HP15_4027 0.21 +1.0 4,264,384 + HP15_4027 0.22 -0.4 4,264,397 - HP15_4027 0.23 +1.1 4,264,408 + HP15_4027 0.23 +0.5 4,264,408 + HP15_4027 0.23 +0.7 4,264,445 - HP15_4027 0.26 -0.0 4,264,472 - HP15_4027 0.28 -0.2 4,264,518 - HP15_4027 0.30 +0.1 4,264,665 - HP15_4027 0.40 +1.8 4,264,743 - HP15_4027 0.45 +0.6 4,264,764 + HP15_4027 0.46 +0.0 4,264,772 - HP15_4027 0.47 +0.3 4,264,785 + HP15_4027 0.48 -0.8 4,264,825 - HP15_4027 0.50 +0.9 4,264,851 + HP15_4027 0.52 +1.1 4,264,934 - HP15_4027 0.57 +1.2 4,264,963 + HP15_4027 0.59 +0.1 4,264,971 - HP15_4027 0.60 +1.4 4,264,971 - HP15_4027 0.60 -0.2 4,264,971 - HP15_4027 0.60 +0.4 4,264,980 - HP15_4027 0.60 -1.9
Or see this region's nucleotide sequence