Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0395

Experiment: LB 30C timecourse1 timepoint 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0393 and Psest_0394 overlap by 4 nucleotidesPsest_0394 and Psest_0395 are separated by 2 nucleotidesPsest_0395 and Psest_0396 are separated by 38 nucleotides Psest_0393: Psest_0393 - Methylase of chemotaxis methyl-accepting proteins, at 423,275 to 424,093 _0393 Psest_0394: Psest_0394 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 424,090 to 424,692 _0394 Psest_0395: Psest_0395 - His Kinase A (phosphoacceptor) domain./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 424,695 to 425,885 _0395 Psest_0396: Psest_0396 - Uncharacterized conserved protein, at 425,924 to 427,384 _0396 Position (kb) 424 425 426Strain fitness (log2 ratio) -2 -1 0 1 2at 423.759 kb on - strand, within Psest_0393at 423.798 kb on - strand, within Psest_0393at 423.798 kb on - strand, within Psest_0393at 423.798 kb on - strand, within Psest_0393at 423.866 kb on - strand, within Psest_0393at 423.886 kb on - strand, within Psest_0393at 423.886 kb on - strand, within Psest_0393at 423.886 kb on - strand, within Psest_0393at 423.929 kb on + strand, within Psest_0393at 423.929 kb on + strand, within Psest_0393at 424.050 kb on - strandat 424.050 kb on - strandat 424.089 kb on + strandat 424.089 kb on + strandat 424.090 kb on - strandat 424.090 kb on - strandat 424.090 kb on - strandat 424.090 kb on - strandat 424.090 kb on - strandat 424.247 kb on + strand, within Psest_0394at 424.247 kb on + strand, within Psest_0394at 424.248 kb on - strand, within Psest_0394at 424.248 kb on - strand, within Psest_0394at 424.248 kb on - strand, within Psest_0394at 424.248 kb on - strand, within Psest_0394at 424.248 kb on - strand, within Psest_0394at 424.248 kb on - strand, within Psest_0394at 424.248 kb on - strand, within Psest_0394at 424.248 kb on - strand, within Psest_0394at 424.334 kb on + strand, within Psest_0394at 424.335 kb on - strand, within Psest_0394at 424.335 kb on - strand, within Psest_0394at 424.351 kb on + strand, within Psest_0394at 424.351 kb on + strand, within Psest_0394at 424.352 kb on - strand, within Psest_0394at 424.352 kb on - strand, within Psest_0394at 424.352 kb on - strand, within Psest_0394at 424.352 kb on - strand, within Psest_0394at 424.352 kb on - strand, within Psest_0394at 424.842 kb on + strand, within Psest_0395at 424.870 kb on + strand, within Psest_0395at 424.870 kb on + strand, within Psest_0395at 424.870 kb on + strand, within Psest_0395at 424.871 kb on - strand, within Psest_0395at 424.871 kb on - strand, within Psest_0395at 424.871 kb on - strand, within Psest_0395at 424.871 kb on - strand, within Psest_0395at 424.871 kb on - strand, within Psest_0395at 424.980 kb on + strand, within Psest_0395at 424.980 kb on + strand, within Psest_0395at 424.980 kb on + strand, within Psest_0395at 424.980 kb on + strand, within Psest_0395at 424.981 kb on - strand, within Psest_0395at 424.981 kb on - strand, within Psest_0395at 424.981 kb on - strand, within Psest_0395at 425.079 kb on + strand, within Psest_0395at 425.079 kb on + strand, within Psest_0395at 425.080 kb on - strand, within Psest_0395at 426.020 kb on + strandat 426.020 kb on + strandat 426.020 kb on + strandat 426.020 kb on + strandat 426.020 kb on + strandat 426.048 kb on + strandat 426.048 kb on + strandat 426.090 kb on + strand, within Psest_0396at 426.105 kb on + strand, within Psest_0396at 426.105 kb on + strand, within Psest_0396at 426.105 kb on + strand, within Psest_0396at 426.105 kb on + strand, within Psest_0396at 426.105 kb on + strand, within Psest_0396at 426.105 kb on + strand, within Psest_0396at 426.105 kb on + strand, within Psest_0396at 426.106 kb on - strand, within Psest_0396at 426.106 kb on - strand, within Psest_0396at 426.106 kb on - strand, within Psest_0396at 426.106 kb on - strand, within Psest_0396at 426.106 kb on - strand, within Psest_0396at 426.106 kb on - strand, within Psest_0396at 426.288 kb on + strand, within Psest_0396at 426.289 kb on - strand, within Psest_0396at 426.406 kb on - strand, within Psest_0396at 426.406 kb on - strand, within Psest_0396at 426.406 kb on - strand, within Psest_0396at 426.406 kb on - strand, within Psest_0396at 426.525 kb on + strand, within Psest_0396at 426.588 kb on + strand, within Psest_0396at 426.588 kb on + strand, within Psest_0396at 426.589 kb on - strand, within Psest_0396at 426.589 kb on - strand, within Psest_0396at 426.589 kb on - strand, within Psest_0396at 426.810 kb on + strand, within Psest_0396at 426.811 kb on - strand, within Psest_0396at 426.811 kb on - strand, within Psest_0396at 426.811 kb on - strand, within Psest_0396at 426.813 kb on + strand, within Psest_0396at 426.813 kb on + strand, within Psest_0396at 426.814 kb on - strand, within Psest_0396at 426.814 kb on - strand, within Psest_0396at 426.814 kb on - strand, within Psest_0396at 426.814 kb on - strand, within Psest_0396at 426.814 kb on - strand, within Psest_0396at 426.814 kb on - strand, within Psest_0396at 426.814 kb on - strand, within Psest_0396

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 2
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423,759 - Psest_0393 0.59 +2.1
423,798 - Psest_0393 0.64 +2.1
423,798 - Psest_0393 0.64 -0.2
423,798 - Psest_0393 0.64 -0.0
423,866 - Psest_0393 0.72 -1.2
423,886 - Psest_0393 0.75 +1.9
423,886 - Psest_0393 0.75 +1.1
423,886 - Psest_0393 0.75 -1.9
423,929 + Psest_0393 0.80 +1.7
423,929 + Psest_0393 0.80 -0.9
424,050 - +0.8
424,050 - -0.2
424,089 + -0.4
424,089 + +0.8
424,090 - +0.1
424,090 - +0.7
424,090 - -0.9
424,090 - +0.1
424,090 - +0.5
424,247 + Psest_0394 0.26 +0.1
424,247 + Psest_0394 0.26 +1.1
424,248 - Psest_0394 0.26 +0.8
424,248 - Psest_0394 0.26 -1.2
424,248 - Psest_0394 0.26 +0.5
424,248 - Psest_0394 0.26 -0.5
424,248 - Psest_0394 0.26 -0.9
424,248 - Psest_0394 0.26 +1.3
424,248 - Psest_0394 0.26 -0.1
424,248 - Psest_0394 0.26 -2.4
424,334 + Psest_0394 0.40 -1.2
424,335 - Psest_0394 0.41 -0.2
424,335 - Psest_0394 0.41 +0.4
424,351 + Psest_0394 0.43 +0.5
424,351 + Psest_0394 0.43 +0.1
424,352 - Psest_0394 0.43 +1.2
424,352 - Psest_0394 0.43 -0.5
424,352 - Psest_0394 0.43 +0.1
424,352 - Psest_0394 0.43 -0.2
424,352 - Psest_0394 0.43 +0.2
424,842 + Psest_0395 0.12 +0.0
424,870 + Psest_0395 0.15 +0.8
424,870 + Psest_0395 0.15 +1.0
424,870 + Psest_0395 0.15 -0.5
424,871 - Psest_0395 0.15 +0.2
424,871 - Psest_0395 0.15 +2.1
424,871 - Psest_0395 0.15 +1.1
424,871 - Psest_0395 0.15 +1.7
424,871 - Psest_0395 0.15 +0.1
424,980 + Psest_0395 0.24 +0.1
424,980 + Psest_0395 0.24 +0.3
424,980 + Psest_0395 0.24 +1.1
424,980 + Psest_0395 0.24 +0.7
424,981 - Psest_0395 0.24 +0.5
424,981 - Psest_0395 0.24 +0.8
424,981 - Psest_0395 0.24 +0.6
425,079 + Psest_0395 0.32 -0.2
425,079 + Psest_0395 0.32 +1.0
425,080 - Psest_0395 0.32 +0.5
426,020 + -2.6
426,020 + +2.1
426,020 + -1.5
426,020 + -0.9
426,020 + +1.5
426,048 + -0.8
426,048 + -0.9
426,090 + Psest_0396 0.11 -0.5
426,105 + Psest_0396 0.12 -0.0
426,105 + Psest_0396 0.12 -0.1
426,105 + Psest_0396 0.12 -0.8
426,105 + Psest_0396 0.12 -0.7
426,105 + Psest_0396 0.12 +1.2
426,105 + Psest_0396 0.12 +0.0
426,105 + Psest_0396 0.12 +2.3
426,106 - Psest_0396 0.12 +0.8
426,106 - Psest_0396 0.12 +0.2
426,106 - Psest_0396 0.12 -0.8
426,106 - Psest_0396 0.12 -0.8
426,106 - Psest_0396 0.12 -0.3
426,106 - Psest_0396 0.12 -1.1
426,288 + Psest_0396 0.25 -0.1
426,289 - Psest_0396 0.25 -1.0
426,406 - Psest_0396 0.33 +0.7
426,406 - Psest_0396 0.33 -0.2
426,406 - Psest_0396 0.33 +0.0
426,406 - Psest_0396 0.33 +0.7
426,525 + Psest_0396 0.41 +0.7
426,588 + Psest_0396 0.45 +0.8
426,588 + Psest_0396 0.45 -0.5
426,589 - Psest_0396 0.46 -0.4
426,589 - Psest_0396 0.46 -1.5
426,589 - Psest_0396 0.46 +0.1
426,810 + Psest_0396 0.61 +0.4
426,811 - Psest_0396 0.61 -2.6
426,811 - Psest_0396 0.61 -1.5
426,811 - Psest_0396 0.61 -0.0
426,813 + Psest_0396 0.61 +0.2
426,813 + Psest_0396 0.61 +0.2
426,814 - Psest_0396 0.61 +0.4
426,814 - Psest_0396 0.61 +0.8
426,814 - Psest_0396 0.61 -1.1
426,814 - Psest_0396 0.61 +0.7
426,814 - Psest_0396 0.61 -0.0
426,814 - Psest_0396 0.61 +1.5
426,814 - Psest_0396 0.61 +0.2

Or see this region's nucleotide sequence