Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_78p00150 and PGA1_78p00160 are separated by 150 nucleotides PGA1_78p00160 and PGA1_78p00170 are separated by 86 nucleotides
PGA1_78p00150: PGA1_78p00150 - putative HTH-type transcriptional regulator, at 17,834 to 18,874
_78p00150
PGA1_78p00160: PGA1_78p00160 - putative sugar-binding periplasmic protein, at 19,025 to 20,254
_78p00160
PGA1_78p00170: PGA1_78p00170 - putative sn-glycerol-3-phosphate transport system permease protein UgpA, at 20,341 to 21,273
_78p00170
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1 at 18.452 kb on - strand, within PGA1_78p00150 at 18.683 kb on + strand, within PGA1_78p00150 at 18.844 kb on + strand at 19.070 kb on - strand at 19.276 kb on + strand, within PGA1_78p00160 at 19.414 kb on + strand, within PGA1_78p00160 at 19.414 kb on + strand, within PGA1_78p00160 at 19.461 kb on - strand, within PGA1_78p00160 at 19.464 kb on + strand, within PGA1_78p00160 at 19.579 kb on - strand, within PGA1_78p00160 at 19.812 kb on - strand, within PGA1_78p00160 at 20.114 kb on + strand, within PGA1_78p00160 at 20.132 kb on - strand at 20.226 kb on + strand at 20.593 kb on - strand, within PGA1_78p00170 at 20.735 kb on + strand, within PGA1_78p00170 at 20.828 kb on + strand, within PGA1_78p00170 at 21.104 kb on - strand, within PGA1_78p00170 at 21.172 kb on - strand, within PGA1_78p00170
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 18,452 - PGA1_78p00150 0.59 -2.2 18,683 + PGA1_78p00150 0.82 -1.2 18,844 + -0.9 19,070 - -1.2 19,276 + PGA1_78p00160 0.20 -0.2 19,414 + PGA1_78p00160 0.32 +1.4 19,414 + PGA1_78p00160 0.32 +1.6 19,461 - PGA1_78p00160 0.35 +0.5 19,464 + PGA1_78p00160 0.36 +1.1 19,579 - PGA1_78p00160 0.45 -0.2 19,812 - PGA1_78p00160 0.64 +1.0 20,114 + PGA1_78p00160 0.89 +0.4 20,132 - +0.9 20,226 + +0.4 20,593 - PGA1_78p00170 0.27 -0.6 20,735 + PGA1_78p00170 0.42 +0.2 20,828 + PGA1_78p00170 0.52 -0.0 21,104 - PGA1_78p00170 0.82 +0.6 21,172 - PGA1_78p00170 0.89 +0.8
Or see this region's nucleotide sequence