Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3785

Experiment: LB 30C timecourse1 timepoint 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB 30C timecourse1 timepoint 2
3,954,133	+		Psest_3784	0.46	+2.0
3,954,133	+		Psest_3784	0.46	-0.3
3,954,133	+		Psest_3784	0.46	-0.3
3,954,134	-		Psest_3784	0.46	+0.0
3,954,134	-		Psest_3784	0.46	+0.0
3,954,274	+		Psest_3784	0.60	-0.8
3,954,625	-				-0.2
3,954,641	+				-0.2
3,954,665	+				+0.2
3,954,665	+				+0.0
3,954,665	+				+2.0
3,954,665	+				+1.0
3,954,665	+				+0.4
3,954,665	+				+1.0
3,954,665	+				+0.8
3,954,665	+				-1.6
3,954,665	+				+2.0
3,954,665	+				+0.3
3,954,666	-				-1.0
3,954,666	-				+0.4
3,954,666	-				+0.0
3,954,666	-				-0.7
3,954,666	-				-0.7
3,954,666	-				+1.7
3,954,666	-				+0.2
3,954,666	-				-1.0
3,954,666	-				+0.5
3,954,666	-				+1.0
3,954,666	-				-0.7
3,954,666	-				+0.4
3,954,669	+				+0.6
3,954,669	+				+0.0
3,954,669	+				+0.0
3,954,669	+				+2.0
3,954,669	+				-1.2
3,954,669	+				+0.0
3,954,669	+				+1.2
3,954,669	+				-0.9
3,954,669	+				+1.0
3,954,669	+				-0.6
3,954,669	+				+0.1
3,954,669	+				+0.2
3,954,670	-				+0.6
3,954,670	-				+0.4
3,954,670	-				-0.6
3,954,670	-				+0.9
3,954,670	-				+2.6
3,954,711	-				+1.4
3,954,764	+				-0.4
3,954,764	+				-0.6
3,954,764	+				-1.0
3,954,764	+				-1.0
3,954,764	+				+1.0
3,954,764	+				-1.3
3,954,764	+				-1.3
3,954,765	-				-1.0
3,954,765	-				+0.2
3,954,765	-				+0.7
3,954,765	-				-1.0
3,954,765	-				-1.3
3,954,765	-				+0.4
3,954,765	-				-1.4
3,954,765	-				+0.0
3,954,768	+				+0.3
3,954,769	-				+0.7
3,954,853	+				-0.3
3,954,853	+				-0.5
3,954,854	-				+2.0
3,954,854	-				+0.3
3,954,854	-				+0.0
3,954,854	-				+0.6
3,955,075	-		Psest_3785	0.14	+2.0
3,955,075	-		Psest_3785	0.14	+0.2
3,955,075	-		Psest_3785	0.14	+0.4
3,955,248	+		Psest_3785	0.25	+0.7
3,955,248	+		Psest_3785	0.25	-0.6
3,955,248	+		Psest_3785	0.25	-1.8
3,955,248	+		Psest_3785	0.25	+0.0
3,955,248	+		Psest_3785	0.25	-0.6
3,955,332	+		Psest_3785	0.31	-0.8
3,955,332	+		Psest_3785	0.31	+1.7
3,955,332	+		Psest_3785	0.31	+0.4
3,955,332	+		Psest_3785	0.31	-1.3
3,955,335	+		Psest_3785	0.31	+0.0
3,955,335	+		Psest_3785	0.31	-1.2
3,955,335	+		Psest_3785	0.31	+0.2
3,955,335	+		Psest_3785	0.31	+0.0
3,955,335	+		Psest_3785	0.31	+1.9
3,955,336	-		Psest_3785	0.31	+1.9
3,955,336	-		Psest_3785	0.31	-0.7
3,955,483	+		Psest_3785	0.40	-1.0
3,955,483	+		Psest_3785	0.40	+2.0
3,955,483	+		Psest_3785	0.40	+0.0
3,955,483	+		Psest_3785	0.40	+2.0
3,955,483	+		Psest_3785	0.40	+0.5
3,955,483	+		Psest_3785	0.40	+1.8
3,955,483	+		Psest_3785	0.40	+1.6
3,955,483	+		Psest_3785	0.40	+2.8
3,955,483	+		Psest_3785	0.40	+1.0
3,955,484	-		Psest_3785	0.41	+0.7
3,955,484	-		Psest_3785	0.41	+1.6
3,955,484	-		Psest_3785	0.41	+1.0
3,955,484	-		Psest_3785	0.41	-0.4
3,955,484	-		Psest_3785	0.41	+0.7
3,955,484	-		Psest_3785	0.41	+1.0
3,955,484	-		Psest_3785	0.41	+0.9
3,955,484	-		Psest_3785	0.41	+0.0
3,955,548	+		Psest_3785	0.45	+0.0
3,955,573	+		Psest_3785	0.46	+1.0
3,955,574	-		Psest_3785	0.46	-0.3
3,955,656	+		Psest_3785	0.52	+0.3
3,955,656	+		Psest_3785	0.52	+1.0
3,955,657	-		Psest_3785	0.52	-1.8
3,955,657	-		Psest_3785	0.52	+1.0
3,955,657	-		Psest_3785	0.52	+1.0
3,955,905	+		Psest_3785	0.68	+0.0
3,955,906	-		Psest_3785	0.68	+1.2
3,955,906	-		Psest_3785	0.68	-0.6
3,956,203	+		Psest_3785	0.87	+0.6
3,956,204	-		Psest_3785	0.87	+0.4
3,956,340	+				+0.6
3,956,341	-				+0.7
3,956,341	-				+1.0
3,956,433	-				+0.0
3,956,514	-				-1.0
3,956,514	-				-0.4
3,956,541	+				+0.3
3,956,541	+				+1.0
3,956,541	+				+1.0
3,956,558	+				-0.2
3,956,558	+				+0.5
3,956,558	+				+1.0
3,956,558	+				+3.0
3,956,559	-				+1.0
3,956,771	+		Psest_3786	0.23	+1.4
3,956,771	+		Psest_3786	0.23	+1.0
3,956,774	+		Psest_3786	0.23	+1.0
3,956,774	+		Psest_3786	0.23	+0.3
3,956,774	+		Psest_3786	0.23	-0.2
3,956,774	+		Psest_3786	0.23	+0.8
3,956,774	+		Psest_3786	0.23	-0.6
3,956,774	+		Psest_3786	0.23	+0.8
3,956,774	+		Psest_3786	0.23	+1.4
3,956,775	-		Psest_3786	0.23	+2.3
3,956,775	-		Psest_3786	0.23	+1.3
3,956,775	-		Psest_3786	0.23	+1.0
3,956,775	-		Psest_3786	0.23	+2.3
3,956,775	-		Psest_3786	0.23	+0.9
3,956,775	-		Psest_3786	0.23	+1.6
3,956,775	-		Psest_3786	0.23	+0.4
3,956,775	-		Psest_3786	0.23	+0.1
3,956,775	-		Psest_3786	0.23	-0.8
3,956,775	-		Psest_3786	0.23	+2.0
3,956,775	-		Psest_3786	0.23	+0.2
3,956,775	-		Psest_3786	0.23	-2.0
3,956,775	-		Psest_3786	0.23	+1.0
3,956,775	-		Psest_3786	0.23	+1.0
3,956,775	-		Psest_3786	0.23	-0.6
3,956,775	-		Psest_3786	0.23	+0.6
3,956,775	-		Psest_3786	0.23	-1.0
3,956,775	-		Psest_3786	0.23	-0.9
3,956,775	-		Psest_3786	0.23	-0.1
3,956,867	+		Psest_3786	0.29	-0.6
3,956,868	-		Psest_3786	0.29	+0.0
3,956,885	+		Psest_3786	0.30	-0.5
3,956,885	+		Psest_3786	0.30	+0.8
3,956,886	-		Psest_3786	0.30	-0.2
3,956,886	-		Psest_3786	0.30	+0.3
3,956,886	-		Psest_3786	0.30	+2.0
3,957,004	+		Psest_3786	0.37	+0.0
3,957,004	+		Psest_3786	0.37	-1.0
3,957,004	+		Psest_3786	0.37	-0.6
3,957,004	+		Psest_3786	0.37	+0.3
3,957,004	+		Psest_3786	0.37	-0.1
3,957,004	+		Psest_3786	0.37	+0.7
3,957,005	-		Psest_3786	0.37	+0.0
3,957,005	-		Psest_3786	0.37	+0.0
3,957,005	-		Psest_3786	0.37	+2.0
3,957,005	-		Psest_3786	0.37	-1.0
3,957,134	+		Psest_3786	0.45	-0.4
3,957,134	+		Psest_3786	0.45	-1.6
3,957,134	+		Psest_3786	0.45	-0.1
3,957,134	+		Psest_3786	0.45	+0.7
3,957,134	+		Psest_3786	0.45	-0.4
3,957,134	+		Psest_3786	0.45	-1.2
3,957,135	-		Psest_3786	0.45	+0.8
3,957,135	-		Psest_3786	0.45	+0.0
3,957,135	-		Psest_3786	0.45	-0.6
3,957,135	-		Psest_3786	0.45	+0.2
3,957,135	-		Psest_3786	0.45	-1.3
3,957,135	-		Psest_3786	0.45	+0.2
3,957,144	-		Psest_3786	0.46	-1.0
3,957,144	-		Psest_3786	0.46	+1.6
3,957,287	+		Psest_3786	0.55	-0.6
3,957,287	+		Psest_3786	0.55	+0.7
3,957,287	+		Psest_3786	0.55	-0.6
3,957,395	+		Psest_3786	0.61	+0.0
3,957,396	-		Psest_3786	0.62	+2.9