Experiment: LB 30C timecourse1 timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0353 and Psest_0354 are separated by 199 nucleotides Psest_0354 and Psest_0355 are separated by 219 nucleotides Psest_0355 and Psest_0356 are separated by 15 nucleotides
Psest_0353: Psest_0353 - Methyl-accepting chemotaxis protein, at 377,220 to 378,842
_0353
Psest_0354: Psest_0354 - Malate synthase G (EC 2.3.3.9) <small>(from data)</small>, at 379,042 to 381,222
_0354
Psest_0355: Psest_0355 - Glycine cleavage system regulatory protein, at 381,442 to 381,966
_0355
Psest_0356: Psest_0356 - rarD protein, at 381,982 to 382,872
_0356
Position (kb) 379
380
381
382 Strain fitness (log2 ratio) -2
-1
0
1
2 at 378.340 kb on + strand, within Psest_0353 at 378.341 kb on - strand, within Psest_0353 at 378.341 kb on - strand, within Psest_0353 at 378.482 kb on - strand, within Psest_0353 at 378.758 kb on + strand at 378.758 kb on + strand at 378.759 kb on - strand at 378.759 kb on - strand at 378.769 kb on + strand at 378.769 kb on + strand at 378.770 kb on - strand at 378.793 kb on - strand at 378.954 kb on + strand at 378.955 kb on - strand at 378.955 kb on - strand at 378.996 kb on - strand at 379.011 kb on + strand at 379.044 kb on - strand at 379.311 kb on + strand, within Psest_0354 at 379.311 kb on + strand, within Psest_0354 at 379.312 kb on - strand, within Psest_0354 at 379.404 kb on - strand, within Psest_0354 at 379.404 kb on - strand, within Psest_0354 at 379.404 kb on - strand, within Psest_0354 at 379.404 kb on - strand, within Psest_0354 at 379.914 kb on + strand, within Psest_0354 at 379.915 kb on - strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.046 kb on - strand, within Psest_0354 at 380.046 kb on - strand, within Psest_0354 at 380.046 kb on - strand, within Psest_0354 at 380.046 kb on - strand, within Psest_0354 at 380.046 kb on - strand, within Psest_0354 at 380.046 kb on - strand, within Psest_0354 at 380.046 kb on - strand, within Psest_0354 at 380.261 kb on + strand, within Psest_0354 at 380.261 kb on + strand, within Psest_0354 at 380.262 kb on - strand, within Psest_0354 at 380.262 kb on - strand, within Psest_0354 at 380.807 kb on + strand, within Psest_0354 at 380.807 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.982 kb on - strand, within Psest_0354 at 380.982 kb on - strand, within Psest_0354 at 380.982 kb on - strand, within Psest_0354 at 380.982 kb on - strand, within Psest_0354 at 380.982 kb on - strand, within Psest_0354 at 381.173 kb on + strand at 381.245 kb on + strand at 381.245 kb on + strand at 381.246 kb on - strand at 381.246 kb on - strand at 381.246 kb on - strand at 381.272 kb on + strand at 381.289 kb on + strand at 381.289 kb on + strand at 381.292 kb on + strand at 381.292 kb on + strand at 381.292 kb on + strand at 381.292 kb on + strand at 381.292 kb on + strand at 381.292 kb on + strand at 381.292 kb on + strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.386 kb on + strand at 381.386 kb on + strand at 381.387 kb on - strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.389 kb on - strand at 381.392 kb on + strand at 381.392 kb on + strand at 381.392 kb on + strand at 381.392 kb on + strand at 381.392 kb on + strand at 381.393 kb on - strand at 381.528 kb on + strand, within Psest_0355 at 381.629 kb on + strand, within Psest_0355 at 381.713 kb on + strand, within Psest_0355 at 381.996 kb on + strand at 381.996 kb on + strand at 381.996 kb on + strand at 381.997 kb on - strand at 381.997 kb on - strand at 382.025 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 2 remove 378,340 + Psest_0353 0.69 +0.4 378,341 - Psest_0353 0.69 -0.7 378,341 - Psest_0353 0.69 +0.3 378,482 - Psest_0353 0.78 -0.3 378,758 + -0.4 378,758 + +1.4 378,759 - +0.2 378,759 - -0.8 378,769 + +1.2 378,769 + -1.2 378,770 - +0.9 378,793 - +0.7 378,954 + -1.3 378,955 - +0.9 378,955 - +1.4 378,996 - -0.6 379,011 + -0.9 379,044 - -0.0 379,311 + Psest_0354 0.12 +0.4 379,311 + Psest_0354 0.12 -1.4 379,312 - Psest_0354 0.12 -0.6 379,404 - Psest_0354 0.17 -2.2 379,404 - Psest_0354 0.17 -0.6 379,404 - Psest_0354 0.17 -0.2 379,404 - Psest_0354 0.17 -0.5 379,914 + Psest_0354 0.40 +0.4 379,915 - Psest_0354 0.40 -0.4 380,045 + Psest_0354 0.46 +0.1 380,045 + Psest_0354 0.46 -0.5 380,045 + Psest_0354 0.46 +1.8 380,045 + Psest_0354 0.46 -0.7 380,045 + Psest_0354 0.46 -0.1 380,045 + Psest_0354 0.46 -1.1 380,045 + Psest_0354 0.46 -0.0 380,045 + Psest_0354 0.46 +0.9 380,045 + Psest_0354 0.46 -1.7 380,045 + Psest_0354 0.46 +0.7 380,045 + Psest_0354 0.46 -0.1 380,046 - Psest_0354 0.46 +2.1 380,046 - Psest_0354 0.46 +0.5 380,046 - Psest_0354 0.46 -0.2 380,046 - Psest_0354 0.46 -1.1 380,046 - Psest_0354 0.46 -0.2 380,046 - Psest_0354 0.46 -1.1 380,046 - Psest_0354 0.46 -0.5 380,261 + Psest_0354 0.56 +2.4 380,261 + Psest_0354 0.56 +0.3 380,262 - Psest_0354 0.56 -0.5 380,262 - Psest_0354 0.56 +0.9 380,807 + Psest_0354 0.81 -0.1 380,807 + Psest_0354 0.81 -2.2 380,981 + Psest_0354 0.89 -0.1 380,981 + Psest_0354 0.89 +0.1 380,981 + Psest_0354 0.89 +0.2 380,981 + Psest_0354 0.89 -0.1 380,981 + Psest_0354 0.89 -1.0 380,981 + Psest_0354 0.89 +0.3 380,981 + Psest_0354 0.89 -0.2 380,981 + Psest_0354 0.89 -0.4 380,981 + Psest_0354 0.89 +0.6 380,981 + Psest_0354 0.89 -0.5 380,981 + Psest_0354 0.89 -0.1 380,981 + Psest_0354 0.89 -0.5 380,982 - Psest_0354 0.89 +0.3 380,982 - Psest_0354 0.89 +1.8 380,982 - Psest_0354 0.89 +0.6 380,982 - Psest_0354 0.89 +0.7 380,982 - Psest_0354 0.89 +0.5 381,173 + -0.9 381,245 + -1.7 381,245 + +0.4 381,246 - +0.2 381,246 - -1.0 381,246 - +2.1 381,272 + -0.4 381,289 + -0.9 381,289 + -0.5 381,292 + +2.1 381,292 + +0.6 381,292 + +0.6 381,292 + -0.4 381,292 + -0.3 381,292 + -0.8 381,292 + +0.1 381,293 - +1.6 381,293 - -0.8 381,293 - -1.9 381,293 - -0.6 381,293 - +0.9 381,293 - -0.1 381,293 - +1.8 381,293 - +1.0 381,293 - +1.3 381,293 - +0.4 381,293 - -1.2 381,293 - +1.1 381,293 - +1.6 381,293 - -0.9 381,293 - -0.0 381,293 - +0.1 381,386 + -1.2 381,386 + +1.2 381,387 - +1.1 381,388 + -0.8 381,388 + +0.9 381,388 + -0.6 381,388 + -0.3 381,388 + +0.2 381,388 + +1.2 381,388 + -0.7 381,388 + +0.1 381,388 + +0.1 381,388 + -1.1 381,388 + -0.2 381,389 - -0.5 381,392 + -0.9 381,392 + +0.5 381,392 + +0.1 381,392 + +1.7 381,392 + -1.3 381,393 - +0.3 381,528 + Psest_0355 0.16 -0.0 381,629 + Psest_0355 0.36 +1.5 381,713 + Psest_0355 0.52 +1.2 381,996 + +0.3 381,996 + -0.7 381,996 + -0.7 381,997 - +1.4 381,997 - +0.5 382,025 + +1.4
Or see this region's nucleotide sequence