Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0035

Experiment: LB 30C timecourse1 timepoint 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB 30C timecourse1 timepoint 2
34,413	-		Psest_0034	0.51	+1.1
34,413	-		Psest_0034	0.51	+0.7
34,527	-		Psest_0034	0.57	-0.3
34,527	-		Psest_0034	0.57	-1.1
34,535	+		Psest_0034	0.57	-0.9
34,536	-		Psest_0034	0.57	+1.1
34,544	+		Psest_0034	0.58	-0.9
34,545	-		Psest_0034	0.58	+1.1
34,649	+		Psest_0034	0.63	+1.8
34,700	+		Psest_0034	0.65	-0.9
34,700	+		Psest_0034	0.65	-1.4
34,700	+		Psest_0034	0.65	-0.9
34,700	+		Psest_0034	0.65	+1.1
34,701	-		Psest_0034	0.65	+0.6
34,701	-		Psest_0034	0.65	-0.2
34,701	-		Psest_0034	0.65	-0.4
34,701	-		Psest_0034	0.65	-1.0
34,701	-		Psest_0034	0.65	+0.2
34,709	-		Psest_0034	0.66	-1.2
34,727	+		Psest_0034	0.67	+1.1
34,775	+		Psest_0034	0.69	-0.5
34,776	-		Psest_0034	0.69	+0.1
35,118	-		Psest_0034	0.86	-0.5
35,118	-		Psest_0034	0.86	-1.9
35,135	+		Psest_0034	0.87	+1.1
35,136	-		Psest_0034	0.87	+2.7
35,136	-		Psest_0034	0.87	+0.2
35,189	+		Psest_0034	0.89	+1.1
35,190	-		Psest_0034	0.89	-0.2
35,192	+		Psest_0034	0.89	+1.1
35,193	-		Psest_0034	0.90	-0.3
35,193	-		Psest_0034	0.90	-0.9
35,222	+				+1.1
35,223	-				-2.5
35,223	-				+1.5
35,232	-				+1.1
35,259	-				+2.1
35,318	+				-0.1
35,318	+				-0.5
35,318	+				+2.1
35,318	+				+0.3
35,319	-				+0.1
35,324	+				+0.5
35,324	+				-0.9
35,324	+				+1.8
35,325	-				+0.3
35,325	-				+0.5
35,325	-				+1.7
35,325	-				+0.1
35,325	-				+0.5
35,325	-				+0.8
35,325	-				+0.7
35,381	+				+2.7
35,381	+				-0.5
35,381	+				+0.1
35,381	+				-0.5
35,382	-				+1.2
35,382	-				-0.4
35,382	-				+0.3
35,382	-				-0.5
35,382	-				+1.8
35,423	-				-0.7
35,428	+				-1.2
35,429	-				-0.4
35,899	+		Psest_0035	0.32	-1.9
35,899	+		Psest_0035	0.32	-0.5
35,899	+		Psest_0035	0.32	-0.9
35,899	+		Psest_0035	0.32	-0.2
35,899	+		Psest_0035	0.32	-0.6
35,900	-		Psest_0035	0.32	+1.1
35,900	-		Psest_0035	0.32	+0.8
35,900	-		Psest_0035	0.32	+0.1
36,040	+		Psest_0035	0.41	-2.1
36,041	-		Psest_0035	0.41	+2.1
36,041	-		Psest_0035	0.41	+2.7
36,303	-		Psest_0035	0.58	-1.2
36,303	-		Psest_0035	0.58	-1.0
36,410	-		Psest_0035	0.65	-0.5
36,574	+		Psest_0035	0.76	+1.1
36,575	-		Psest_0035	0.76	-0.2
36,575	-		Psest_0035	0.76	+0.1
36,575	-		Psest_0035	0.76	+1.1
36,578	-		Psest_0035	0.76	-0.2
36,601	+		Psest_0035	0.78	+0.2
36,601	+		Psest_0035	0.78	+0.1
36,601	+		Psest_0035	0.78	+0.1
36,602	-		Psest_0035	0.78	+1.5
37,064	-				-0.9
37,064	-				+0.5
37,078	+				+1.1
37,078	+				+1.1
37,078	+				-0.5
37,078	+				+0.4
37,078	+				-1.4
37,078	+				+1.1
37,078	+				+0.7
37,078	+				+0.5
37,079	-				+1.1
37,079	-				-0.9
37,262	-		Psest_0036	0.20	+1.1
37,270	+		Psest_0036	0.21	+1.3
37,270	+		Psest_0036	0.21	+0.9
37,270	+		Psest_0036	0.21	+1.2
37,270	+		Psest_0036	0.21	-0.2
37,270	+		Psest_0036	0.21	+1.5
37,270	+		Psest_0036	0.21	+0.7
37,271	-		Psest_0036	0.21	+2.1
37,271	-		Psest_0036	0.21	+0.1
37,271	-		Psest_0036	0.21	+2.1
37,531	+		Psest_0036	0.36	+1.8
37,531	+		Psest_0036	0.36	+0.7
37,532	-		Psest_0036	0.36	+2.1
37,532	-		Psest_0036	0.36	+0.5
37,532	-		Psest_0036	0.36	+0.1
37,571	-		Psest_0036	0.38	+2.1
37,576	+		Psest_0036	0.39	+0.5
37,577	-		Psest_0036	0.39	+0.7
37,615	+		Psest_0036	0.41	-1.2
37,615	+		Psest_0036	0.41	+1.1
37,654	+		Psest_0036	0.43	-0.7
37,654	+		Psest_0036	0.43	+0.9
37,654	+		Psest_0036	0.43	+0.1
37,655	-		Psest_0036	0.43	+0.9
37,655	-		Psest_0036	0.43	-0.9
37,660	+		Psest_0036	0.44	+3.1
37,855	+		Psest_0036	0.55	+2.1
37,855	+		Psest_0036	0.55	+0.6
37,855	+		Psest_0036	0.55	-0.8